mRNA_H-paniculata_contig3229.8700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3229.8700.1 vs. uniprot
Match: A0A6H5KGW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW1_9PHAE) HSP 1 Score: 318 bits (816), Expect = 3.390e-99 Identity = 177/340 (52.06%), Postives = 219/340 (64.41%), Query Frame = 1
Query: 1 VTHGAEKLPYYTADFHMEYAMACRQRAQGHKKDEIRALWLAKQEQARQKAAGIIQAGWRGKNGRIAGRAQLKAGRMEQRRAWRQRKKDDRFRRAWWYNALDLAGVAPALKSDTLEEEVLRRVPRVSRKRPRQYIALNREDAAWVPGKLDGRKGIFKRGFDVGTMEQLKQQARRGGVRLPGSHSVVTAHRSIYTDPTYDMTEFIKPRNILRVQDDIFKVLEILPDRVRVDHVWRGKDEKGVLLYKMVLTRRQKILLTARGVLWSSQPVQ---------YGIQVALVLQEDLLNRTLRAMAMRYKKKRQKRLYALTKSILRKQEDKIRALKLRLNAAQFGLD 993
V HGAEKLPYY A HMEYAMACR+R++ + +E R LWL Q +A+++AA IQA WRGK GRI G A LKAGR R WRQRKKDDR R+A WY ALDLAG+AP L SD L+E VL+R GI +RGFD+GT+++LK QA RGG+RLPG H+V T HR IYTDP Y M +F+KP NI+RVQ ++FKV + DR+RVD VW + K VLLYKMVL RQK+LL + Q + I+V LVL+ED++NR LR A YK+KR+KRLY L K L+K E+ + +LKL+LN AQFGLD
Sbjct: 396 VNHGAEKLPYYPASLHMEYAMACRKRSRKERDEEARTLWLEDQARAKERAAVRIQARWRGKIGRIEGLAHLKAGRARHRAEWRQRKKDDRKRKALWYEALDLAGLAPRLASDRLDEHVLKR-------------------------------GIVRRGFDIGTVDELKDQATRGGIRLPGGHTVKTGHRCIYTDPAYVMGDFLKPENIIRVQGELFKVETVRADRIRVDRVWNKRGSKRVLLYKMVLNPRQKLLLGVPELYDGMHLAQLHAPISMLSFVIKVTLVLEEDVINRMLRKAAKYYKRKRRKRLYTLAKKTLKKSEENVGSLKLKLNIAQFGLD 704
BLAST of mRNA_H-paniculata_contig3229.8700.1 vs. uniprot
Match: D7FJ20_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ20_ECTSI) HSP 1 Score: 319 bits (817), Expect = 2.970e-95 Identity = 175/331 (52.87%), Postives = 211/331 (63.75%), Query Frame = 1
Query: 1 VTHGAEKLPYYTADFHMEYAMACRQRAQGHKKDEIRALWLAKQEQARQKAAGIIQAGWRGKNGRIAGRAQLKAGRMEQRRAWRQRKKDDRFRRAWWYNALDLAGVAPALKSDTLEEEVLRRVPRVSRKRPRQYIALNREDAAWVPGKLDGRKGIFKRGFDVGTMEQLKQQARRGGVRLPGSHSVVTAHRSIYTDPTYDMTEFIKPRNILRVQDDIFKVLEILPDRVRVDHVWRGKDEKGVLLYKMVLTRRQKILLTARGVLWSSQPVQYGIQVALVLQEDLLNRTLRAMAMRYKKKRQKRLYALTKSILRKQEDKIRALKLRLNAAQFGLD 993
V HGAEKLPYY A HMEYAMACR+R++ + +E R+LWL Q +A+++AA IQA WRGK GRI G A LKAGR R WRQRKKDDR R A WY ALDLAG I +RGFD GT+++LK QA RGG+RLPG H+V T HR IYTDP Y M +F+KP+NI+RVQ ++FKV + DR+RVD VW + K VLLYKMVL RQK+LL A WSSQ VQYGIQV LVL+ED++NR LR A YK+KR+KRLY L K L+K E+ + +LKL+LN AQFGLD
Sbjct: 1202 VNHGAEKLPYYPASLHMEYAMACRKRSRKERDEEARSLWLEDQGRAKERAAVRIQARWRGKIGRIEGLAHLKAGRARHRAEWRQRKKDDRKRNALWYEALDLAG-------------------------------------------------IVRRGFDFGTVDELKDQAERGGIRLPGGHTVKTGHRCIYTDPAYVMGDFLKPKNIIRVQGELFKVETVEADRIRVDRVWNKRGSKRVLLYKMVLNPRQKLLLGASRAFWSSQAVQYGIQVTLVLEEDVINRMLRNAAKYYKRKRRKRLYTLAKKTLKKSEEHVGSLKLKLNVAQFGLD 1483
BLAST of mRNA_H-paniculata_contig3229.8700.1 vs. uniprot
Match: A0A7S1UFF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFF4_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.340e-29 Identity = 90/251 (35.86%), Postives = 130/251 (51.79%), Query Frame = 1
Query: 1 VTHGAEKLPYYTADFHMEYAMACRQRAQGHKKDEIRA-LWLAKQEQAR--QKAAGIIQAGWRGKNGRIAGRAQLKAGRMEQRRAWRQRKKDDRFRRAWWYNALDLAGVAPALKSDTLEEEVLRRVPRVSRKRPRQYIALNREDAAWVPGKLDGRKGIFKRGFDVG--TMEQLKQQARRGGVRLPGSHSVVTAHRSIYTDPTYDMTEFIKPRNILRVQDDIFKVLEILPDR-VRVDHVWRGKDEKGVLLYKM 735
+ H E LPYYTA H + R+ + ++ I A L K E + ++A +IQA +RG G G LK R + R+A+RQRKKD R+ +Y LD G AP L SDT EE VL+R+P R+ R++I N+ W P +K +RGFDV T E+L +Q RRGG RLPG +V + + D+T + +++R+ D F V +++ + V VD W D V Y+M
Sbjct: 82 LNHTCEALPYYTAIMHDNFM---RRNREDKRRQRIEAELRKGKDEHVKVLDESAIVIQAWYRGALGYRYGAVYLKEERSKIRQAYRQRKKDSAERKRLYYRTLDAVGAAPMLLSDTPEERVLKRIPAPRRRGARRHIGTNQSMVLWYPQTCKDKKRAPQRGFDVVGYTEEELVEQGRRGGTRLPGVLTVTQGCLKLVA--SMDLTHILSNGDVIRILDTTFMVKQVVDETDVYVDRPWWRGDLPAVNFYRM 327
BLAST of mRNA_H-paniculata_contig3229.8700.1 vs. uniprot
Match: A0A7S2CWY0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CWY0_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.800e-24 Identity = 86/251 (34.26%), Postives = 128/251 (51.00%), Query Frame = 1
Query: 1 VTHGAEKLPYYTADFHMEYAMACRQRAQGHKKDEIRALWLAKQEQARQKAAGIIQAGWRGKNGRIAGRAQLKAGRMEQRRAWRQRKKDDRFRRAWWYNALDLAGVAPALKSDTLEEEVLRRVPRVSRKRPRQYIALNREDAAWVPGKLDGRKGIFKRGFDVGTMEQLKQQARRGGVRLPGSHSVVTAHRSIYTDPTYDMTEFIKPRNILRVQDDIFKV------LEILPDRVRVDHVWRGKDEKGVLLYKM 735
V H EKL YYT H + R+ A+ + DE A + + A ++Q +RG GRI G+ LK R + R AW+ R+K++ RR + Y ++ G A L+SD LEE+VL+RVP R R R +I N D A K + F +GT+EQL +QAR GGVRLPG S+ R ++T T D++ +K + +R++ F V L + + V + VWR + K ++ M
Sbjct: 376 VHHEYEKLNYYTHTLHEHFMRDAREEARRKRDDEKLAQLRSSAPAVQHDKALVLQRMYRGMLGRIEGKLYLKQERHKIRNAWKLRQKENLKRRRYVYQLRNMFGYAKMLESDLLEEQVLQRVPIWKRPRARYFIQQNLADEAHFAHLERDVKKTPRAHFRIGTVEQLIEQARYGGVRLPGLISIEEGSREVHT--TLDLSSLVKKGDRVRIKHWCFFVNGDGTDLVLGKETVPLARVWRLDNVKDEPMFLM 624
BLAST of mRNA_H-paniculata_contig3229.8700.1 vs. uniprot
Match: A0A836CJQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ7_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.390e-10 Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 1
Query: 451 RKGIFKRGFDVGTMEQLKQQARRGGVRLPGSHSVVTAHRSIYTDPTYDMTEFIKPRNILRVQDDIFKV-------------------------LEILPDRVRVDHVWRGKDEKGVLLYKMVLTRRQKILLTARGVLWSSQPVQYGIQVALVL 831
R+ FKRGF VGT ++L +QARRGG+RLPG H + R + +D+T ++ + +RV ++V L + P + +D VWR +LYK+ + ++ L +A S P Q G+ AL+L
Sbjct: 1629 RQRRFKRGFRVGTPDELAEQARRGGLRLPGRHRLTQGSRDVAAG--WDLTRVLRRGSFVRVGAHWYQVGRDFKLKLGKVQCDGGVRLRSPDELLAVTPQTLALDRVWREPSAAAAVLYKLRASAAERALWSAARACVQSAPFQAGVIAALLL 1778 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3229.8700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3229.8700.1 >prot_H-paniculata_contig3229.8700.1 ID=prot_H-paniculata_contig3229.8700.1|Name=mRNA_H-paniculata_contig3229.8700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=333bp VTHGAEKLPYYTADFHMEYAMACRQRAQGHKKDEIRALWLAKQEQARQKAback to top mRNA from alignment at H-paniculata_contig3229:11959..15592+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3229.8700.1 ID=mRNA_H-paniculata_contig3229.8700.1|Name=mRNA_H-paniculata_contig3229.8700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3634bp|location=Sequence derived from alignment at H-paniculata_contig3229:11959..15592+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3229:11959..15592+ >mRNA_H-paniculata_contig3229.8700.1 ID=mRNA_H-paniculata_contig3229.8700.1|Name=mRNA_H-paniculata_contig3229.8700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1998bp|location=Sequence derived from alignment at H-paniculata_contig3229:11959..15592+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |