mRNA_H-paniculata_contig32242.8687.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32242.8687.1
Unique NamemRNA_H-paniculata_contig32242.8687.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: A0A835ZIT7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.930e-11
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   28 QLACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPNFAEILLQPADHPRFR 189
            + AC H  C+ECL + F  ++ED SL+P+RCC +PVDPN A + L  A   RFR
Sbjct:  280 KFACDHAACRECLHRLFSTALEDTSLIPIRCCAVPVDPNLATVALTGAALARFR 333
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: A0A0G4G973_9ALVE (RING-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G973_9ALVE)

HSP 1 Score: 63.9 bits (154), Expect = 3.240e-10
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   25 IQLACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPNFAEILLQPADHPRFRFRSRWVIFS 216
            +  +C H +C  C  + FR + +D SLLPVRCC  P+DP +AE+++ P D  RF    RW  FS
Sbjct:  196 LTFSCGHTYCFLCTEELFRHATQDVSLLPVRCCRQPIDPLYAELVMNPGDLQRFM--RRWEEFS 257
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: K0R694_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R694_THAOC)

HSP 1 Score: 56.6 bits (135), Expect = 9.470e-8
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   22 GIQLACS-HRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPNFAEILLQPADHPRFRFR 195
            G  LAC  H  C +C    F+ ++ D SLLP+RCC++P+D N +  LL P D    +FR
Sbjct:   85 GFNLACGQHSICIDCSRNLFQSAVRDTSLLPLRCCDVPIDMNISSWLLSPEDSNLIQFR 143
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: K0TFM9_THAOC (SAM domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFM9_THAOC)

HSP 1 Score: 56.6 bits (135), Expect = 1.170e-7
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   22 GIQLACS-HRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPNFAEILLQPADHPRFRFR 195
            G  LAC  H  C +C    F+ ++ D SLLP+RCC++P+D N +  LL P D    +FR
Sbjct:  265 GFNLACGQHSICIDCSRNLFQSAVRDTSLLPLRCCDVPIDMNISSWLLSPEDSNLIQFR 323
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: A0A1L9WU27_ASPA1 (RING-type domain-containing protein n=1 Tax=Aspergillus aculeatus (strain ATCC 16872 / CBS 172.66 / WB 5094) TaxID=690307 RepID=A0A1L9WU27_ASPA1)

HSP 1 Score: 54.7 bits (130), Expect = 5.910e-7
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   25 IQLACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPN 144
            +Q  CSHR+CK C+ + FR ++ D SLLP+RCC +P+ P+
Sbjct:  178 MQTPCSHRYCKACVLRLFREALADESLLPLRCCRLPIPPS 217
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: A0A7S1DBN6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBN6_CYCTE)

HSP 1 Score: 52.4 bits (124), Expect = 3.020e-6
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   31 LACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPNFAEILL 162
            LAC H+ C  CL + F+ ++ D+SLLP++CC +P+D   A+ LL
Sbjct:   44 LACGHKLCVACLRRLFQSALNDSSLLPLKCCELPIDMTVADSLL 87
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: A0A2V5HCG1_ASPV1 (RING-type domain-containing protein n=4 Tax=Aspergillus TaxID=5052 RepID=A0A2V5HCG1_ASPV1)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-5
Identity = 18/40 (45.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   25 IQLACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPN 144
            +Q  CSHR+C+ C+ +  R ++ D SLLP+RCC +P+ P+
Sbjct:  178 MQTPCSHRYCRACVLRLVREALADESLLPLRCCRLPIPPS 217
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BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Match: A0A8G1W0H3_9EURO (RING-type domain-containing protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A8G1W0H3_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 1.850e-5
Identity = 18/40 (45.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   25 IQLACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPN 144
            +Q  CSH++CK C+ +  R ++ D SLLP+RCC +P+ P+
Sbjct:  178 MQTPCSHQYCKACVLRLVREALADESLLPLRCCRLPIPPS 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32242.8687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZIT7_9STRA6.930e-1150.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0G4G973_9ALVE3.240e-1043.75RING-type domain-containing protein n=1 Tax=Chrome... [more]
K0R694_THAOC9.470e-842.37Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0TFM9_THAOC1.170e-742.37SAM domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A1L9WU27_ASPA15.910e-750.00RING-type domain-containing protein n=1 Tax=Asperg... [more]
A0A7S1DBN6_CYCTE3.020e-645.45Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A2V5HCG1_ASPV11.350e-545.00RING-type domain-containing protein n=4 Tax=Asperg... [more]
A0A8G1W0H3_9EURO1.850e-545.00RING-type domain-containing protein n=3 Tax=Asperg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32242contigH-paniculata_contig32242:2057..2272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.8865805-CDS-H-paniculata_contig32242:2056..22721622929995.8865805-CDS-H-paniculata_contig32242:2056..2272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32242 2057..2272 -
1691481103.120735-CDS-H-paniculata_contig32242:2056..22721691481103.120735-CDS-H-paniculata_contig32242:2056..2272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32242 2057..2272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32242.8687.1prot_H-paniculata_contig32242.8687.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32242 2057..2272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32242.8687.1

>prot_H-paniculata_contig32242.8687.1 ID=prot_H-paniculata_contig32242.8687.1|Name=mRNA_H-paniculata_contig32242.8687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MELGERPGIQLACSHRHCKECLGKAFRLSIEDASLLPVRCCNIPVDPNFA
EILLQPADHPRFRFRSRWVIFS
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mRNA from alignment at H-paniculata_contig32242:2057..2272-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32242.8687.1 ID=mRNA_H-paniculata_contig32242.8687.1|Name=mRNA_H-paniculata_contig32242.8687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig32242:2057..2272- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTGGGGGAGCGGCCTGGGATTCAGCTGGCGTGCTCCCATCGGCA
CTGCAAGGAATGTCTGGGAAAGGCATTTCGGCTATCGATAGAAGATGCCT
CGCTTCTTCCCGTGCGCTGCTGCAATATTCCCGTGGATCCGAATTTTGCA
GAGATACTATTGCAGCCAGCCGATCATCCTCGTTTCCGTTTTCGCAGCAG
GTGGGTAATATTCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig32242:2057..2272-

>mRNA_H-paniculata_contig32242.8687.1 ID=mRNA_H-paniculata_contig32242.8687.1|Name=mRNA_H-paniculata_contig32242.8687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig32242:2057..2272- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTGGGGGAGCGGCCTGGGATTCAGCTGGCGTGCTCCCATCGGCA
CTGCAAGGAATGTCTGGGAAAGGCATTTCGGCTATCGATAGAAGATGCCT
CGCTTCTTCCCGTGCGCTGCTGCAATATTCCCGTGGATCCGAATTTTGCA
GAGATACTATTGCAGCCAGCCGATCATCCTCGTTTCCGTTTTCGCAGCAG
GTGGGTAATATTCTCTATGGAGTTGGGGGAGCGGCCTGGGATTCAGCTGG
CGTGCTCCCATCGGCACTGCAAGGAATGTCTGGGAAAGGCATTTCGGCTA
TCGATAGAAGATGCCTCGCTTCTTCCCGTGCGCTGCTGCAATATTCCCGT
GGATCCGAATTTTGCAGAGATACTATTGCAGCCAGCCGATCATCCTCGTT
TCCGTTTTCGCAGCAGGTGGGTAATATTCTCT
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