mRNA_H-paniculata_contig3222.8678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3222.8678.1
Unique NamemRNA_H-paniculata_contig3222.8678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A6H5J6N3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6N3_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 3.930e-68
Identity = 118/182 (64.84%), Postives = 141/182 (77.47%), Query Frame = 1 
Query:  184 TVALKTHFAVASSRVSRGEKSALRMAEEGFGVPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGD--KIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKLRDI 723
            T +  T F V +SR S     + RM  +     L +G+DAPAF+V DQD  EVTL+SFKG+KNV+VYFYPKD T GCTKEACTFRDL+++YDALDCVVLGVSAD EASH +FI  LGLNFSLLADT+K+L+ AYGA K  D  KIQRSTV++DKEGKVAAVWNPVT AE HP +VL K++ +
Sbjct:   15 TSSFLTPFPVGASRNSNSAIKSFRMGMDH----LKIGSDAPAFSVKDQDGAEVTLSSFKGQKNVIVYFYPKDATPGCTKEACTFRDLQSDYDALDCVVLGVSADSEASHQDFIADLGLNFSLLADTDKSLINAYGAMKAEDENKIQRSTVVIDKEGKVAAVWNPVTAAEEHPVEVLEKIKGM 192
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BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A6H5JKZ1_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ1_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.820e-67
Identity = 111/151 (73.51%), Postives = 124/151 (82.12%), Query Frame = 1 
Query:  274 GVPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKLRDIL 726
            G PL VGT+AP F V DQD  EVTL SF+GE NVVV+FYPKD+T GCTKEAC FRDLK EYD LDC VLGVSAD E SH  FI K GLNF LLADT+++L+K+YGA+K GDKIQRSTVLVDKEGKVAAVWNPV  AE HP  VLAKL++I+
Sbjct:   88 GGPLEVGTEAPPFAVKDQDGAEVTLESFRGENNVVVFFYPKDNTPGCTKEACKFRDLKDEYDRLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQRSTVLVDKEGKVAAVWNPVIGAEQHPVQVLAKLKEIM 238
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BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: UPI001ABB675D (peroxiredoxin n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001ABB675D)

HSP 1 Score: 160 bits (405), Expect = 3.570e-43
Identity = 85/146 (58.22%), Postives = 104/146 (71.23%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PL VGTDAP+FTV D +   V+L+ F G K VV+YFYPKDDT GCTK+AC+FRD + EY   D VVLGVSADDEASH  F +K  LNF LLADTN+TL+KAY     G   +R T ++D  GK+A V + V TA TH ND+L +L
Sbjct:    1 MPLAVGTDAPSFTVKDTNGNAVSLSDFNG-KTVVLYFYPKDDTPGCTKQACSFRDSREEYQNKDIVVLGVSADDEASHQAFTQKYNLNFPLLADTNQTLIKAYDVDG-GGYAKRVTYVIDGAGKIAHVDSSVNTA-THANDILKQL 143
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BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A7S2V4W9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.580e-43
Identity = 81/146 (55.48%), Postives = 102/146 (69.86%), Query Frame = 1 
Query:  283 LTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATK--PGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            L VG  AP F++ D++   V+L  F G KNV ++FYPKD T GCT+E C FRDLK E+DA +CV+LGVSADDE SH  FI +   NF LLADT++ +V AYGA    PG K+ RS+VL+  +G V AVWNPV  A  HP++VLA L
Sbjct:    8 LQVGQQAPDFSLPDENGNLVSLGDFAG-KNVAIFFYPKDLTPGCTREGCRFRDLKAEFDAKNCVILGVSADDEESHQRFIAEHSFNFHLLADTSRQMVGAYGAESDPPGVKVMRSSVLIGGDGLVRAVWNPVKNAGEHPDEVLAAL 152
[Close]
BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: UPI002021804D (peroxiredoxin n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI002021804D)

HSP 1 Score: 155 bits (393), Expect = 1.890e-41
Identity = 82/146 (56.16%), Postives = 102/146 (69.86%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PLTVGTDAPAFT  D +   V+L+ F G K VV+YFYPKDDT GCTK+AC FRD   +Y + D VVLGVSADDEASH  F +K  LNF LLADT+KT++KAY     G   +R T ++D  GK+  V + V T+ +H +DVLA L
Sbjct:    1 MPLTVGTDAPAFTAQDTNGNTVSLSDFAG-KTVVLYFYPKDDTPGCTKQACGFRDASADYQSKDIVVLGVSADDEASHQQFTQKYNLNFPLLADTDKTMIKAYDVDG-GGYAKRVTYVIDGNGKIINVDSSVNTS-SHASDVLASL 143
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BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A1Y0RQ36_9CYAN (Peroxiredoxin n=13 Tax=Nostocales TaxID=1161 RepID=A0A1Y0RQ36_9CYAN)

HSP 1 Score: 155 bits (392), Expect = 2.640e-41
Identity = 82/146 (56.16%), Postives = 103/146 (70.55%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PL VGTDAPAFT  D +   V+L+ FKG K VV+YFYPKDDT GCTK+AC+FRD   EY + D V+LGVSADDEASH  F +K  LNF LL DT+K+L+KAY     G   +R T ++D +GK+  V + V T+ TH +DVLA L
Sbjct:    1 MPLAVGTDAPAFTTKDTNGNPVSLSDFKG-KTVVLYFYPKDDTPGCTKQACSFRDAIDEYKSKDIVILGVSADDEASHQAFTQKYNLNFPLLTDTDKSLIKAYDVDG-GGYAKRVTYVIDGDGKIIKVDSSVNTS-THASDVLAAL 143
[Close]
BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A7S6RDV3_9CYAN (Peroxiredoxin n=15 Tax=Nostocales TaxID=1161 RepID=A0A7S6RDV3_9CYAN)

HSP 1 Score: 155 bits (391), Expect = 3.670e-41
Identity = 84/146 (57.53%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PL VGTDAPAFTV D     V+L+ F G K VV+YFYPKDDT GCTK+AC+FRD + EY   D VVLGVSADD+ASH  F +K  LNF LLADTN+TL+KAY     G   +R T ++D  GK+  V   V T  TH +DVLA L
Sbjct:    1 MPLAVGTDAPAFTVKDTSGNTVSLSDFAG-KTVVLYFYPKDDTPGCTKQACSFRDAQPEYLGKDIVVLGVSADDQASHQAFTQKYNLNFPLLADTNQTLIKAYDVDG-GGYAKRVTYVIDPNGKIVHVDASVNTT-THASDVLAAL 143
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BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: G6FWP2_9CYAN (Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=4 Tax=Fischerella TaxID=1190 RepID=G6FWP2_9CYAN)

HSP 1 Score: 155 bits (391), Expect = 3.670e-41
Identity = 83/146 (56.85%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PL VGTDAPAFTV D +   V+L+ FKG K VV+YFYPKDDT GCTK+AC+FRD K +Y + D VVLGVSADDEASH  F +K  LNF LLADT   L+KAY     G   +R T ++D  GK+  V + V T+ TH  D+LA L
Sbjct:    1 MPLAVGTDAPAFTVKDTNGNTVSLSDFKG-KTVVLYFYPKDDTPGCTKQACSFRDAKEQYTSKDIVVLGVSADDEASHQAFTQKYNLNFPLLADTKGELIKAYDVDG-GGYAKRVTYVIDGNGKIIHVDSSVNTS-THARDILATL 143
[Close]
BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A844MUS9_9CYAN (Redoxin domain-containing protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A844MUS9_9CYAN)

HSP 1 Score: 154 bits (390), Expect = 5.100e-41
Identity = 84/146 (57.53%), Postives = 99/146 (67.81%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PL VG DAP FTV D +   V+L+ FKG K VV+YFYPKDDT GCTK+AC+FRD K +Y   D VVLGVS DDEASH  F +K  LNF LLADT KTLV AY     G   +R T ++D  GK+  V + V TA TH +DVLA L
Sbjct:    1 MPLAVGNDAPNFTVKDTNGNTVSLSDFKG-KTVVLYFYPKDDTPGCTKQACSFRDAKDDYQGKDVVVLGVSVDDEASHQAFTQKYNLNFPLLADTQKTLVNAYDVDG-GGYAKRVTYVIDGNGKIIHVDSSVNTA-THASDVLAAL 143
[Close]
BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Match: A0A1Z4IEF6_9NOSO (Thioredoxin domain-containing protein n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4IEF6_9NOSO)

HSP 1 Score: 154 bits (390), Expect = 5.100e-41
Identity = 83/146 (56.85%), Postives = 102/146 (69.86%), Query Frame = 1 
Query:  277 VPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVYFYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLGLNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAETHPNDVLAKL 714
            +PL VGTDAPAFTV D +   V+L+ F G K VV+YFYPKDDT GCTK+AC+FRD +++Y   D VVLGVSADDEASH  F +K  LNF LLADTN +L+KAY     G   +R T ++  EGK+  V + V TA TH  DVL+ L
Sbjct:    1 MPLAVGTDAPAFTVKDTNGNTVSLSDFAG-KTVVLYFYPKDDTPGCTKQACSFRDAQSDYKNKDVVVLGVSADDEASHQAFTQKYNLNFPLLADTNHSLIKAYDVDG-GGYAKRITYVIGPEGKIVHVDSTVNTA-THAGDVLSAL 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3222.8678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6N3_9PHAE3.930e-6864.84Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5JKZ1_9PHAE1.820e-6773.51Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
UPI001ABB675D3.570e-4358.22peroxiredoxin n=1 Tax=Aetokthonos hydrillicola Tax... [more]
A0A7S2V4W9_9STRA4.580e-4355.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI002021804D1.890e-4156.16peroxiredoxin n=1 Tax=Chroococcidiopsis sp. CCMEE ... [more]
A0A1Y0RQ36_9CYAN2.640e-4156.16Peroxiredoxin n=13 Tax=Nostocales TaxID=1161 RepID... [more]
A0A7S6RDV3_9CYAN3.670e-4157.53Peroxiredoxin n=15 Tax=Nostocales TaxID=1161 RepID... [more]
G6FWP2_9CYAN3.670e-4156.85Alkyl hydroperoxide reductase/ Thiol specific anti... [more]
A0A844MUS9_9CYAN5.100e-4157.53Redoxin domain-containing protein n=4 Tax=Nostocal... [more]
A0A1Z4IEF6_9NOSO5.100e-4156.85Thioredoxin domain-containing protein n=4 Tax=Nost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3222contigH-paniculata_contig3222:1020..6220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue4.9e-58
Seed eggNOG ortholog2880.D8LK67
Preferred nameDOT5
KEGG koko:K03564,ko:K17275
Hectar predicted targeting categorychloroplast
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG1225@1,KOG0855@2759
Ec32 ortholog descriptionAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
Ec32 orthologEc-08_001690.1
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04147,ko04812
Exons6
Model size1701
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3222.8678.1prot_H-paniculata_contig3222.8678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3222 1104..5248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.8219173-UTR-H-paniculata_contig3222:1019..11031622929994.8219173-UTR-H-paniculata_contig3222:1019..1103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3222 1020..1103 +
1691481102.6177406-UTR-H-paniculata_contig3222:1019..11031691481102.6177406-UTR-H-paniculata_contig3222:1019..1103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3222 1020..1103 +
1622929994.9481144-UTR-H-paniculata_contig3222:5248..62201622929994.9481144-UTR-H-paniculata_contig3222:5248..6220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3222 5249..6220 +
1691481102.7097123-UTR-H-paniculata_contig3222:5248..62201691481102.7097123-UTR-H-paniculata_contig3222:5248..6220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3222 5249..6220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.845526-CDS-H-paniculata_contig3222:1103..13071622929994.845526-CDS-H-paniculata_contig3222:1103..1307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 1104..1307 +
1691481102.6379333-CDS-H-paniculata_contig3222:1103..13071691481102.6379333-CDS-H-paniculata_contig3222:1103..1307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 1104..1307 +
1622929994.8636827-CDS-H-paniculata_contig3222:2421..25381622929994.8636827-CDS-H-paniculata_contig3222:2421..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 2422..2538 +
1691481102.6497066-CDS-H-paniculata_contig3222:2421..25381691481102.6497066-CDS-H-paniculata_contig3222:2421..2538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 2422..2538 +
1622929994.877298-CDS-H-paniculata_contig3222:3187..32131622929994.877298-CDS-H-paniculata_contig3222:3187..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 3188..3213 +
1691481102.6686912-CDS-H-paniculata_contig3222:3187..32131691481102.6686912-CDS-H-paniculata_contig3222:3187..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 3188..3213 +
1622929994.891179-CDS-H-paniculata_contig3222:3921..40561622929994.891179-CDS-H-paniculata_contig3222:3921..4056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 3922..4056 +
1691481102.6794033-CDS-H-paniculata_contig3222:3921..40561691481102.6794033-CDS-H-paniculata_contig3222:3921..4056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 3922..4056 +
1622929994.9082885-CDS-H-paniculata_contig3222:4616..47191622929994.9082885-CDS-H-paniculata_contig3222:4616..4719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 4617..4719 +
1691481102.6884816-CDS-H-paniculata_contig3222:4616..47191691481102.6884816-CDS-H-paniculata_contig3222:4616..4719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 4617..4719 +
1622929994.933291-CDS-H-paniculata_contig3222:5188..52481622929994.933291-CDS-H-paniculata_contig3222:5188..5248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 5189..5248 +
1691481102.6994042-CDS-H-paniculata_contig3222:5188..52481691481102.6994042-CDS-H-paniculata_contig3222:5188..5248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3222 5189..5248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3222.8678.1

>prot_H-paniculata_contig3222.8678.1 ID=prot_H-paniculata_contig3222.8678.1|Name=mRNA_H-paniculata_contig3222.8678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MWYAIQLLALFATAVSQARSFVLIPTVSSAFRATVALKTHFAVASSRVSR
GEKSALRMAEEGFGVPLTVGTDAPAFTVNDQDEKEVTLASFKGEKNVVVY
FYPKDDTSGCTKEACTFRDLKTEYDALDCVVLGVSADDEASHVNFIEKLG
LNFSLLADTNKTLVKAYGATKPGDKIQRSTVLVDKEGKVAAVWNPVTTAE
THPNDVLAKLRDIL*
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mRNA from alignment at H-paniculata_contig3222:1020..6220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3222.8678.1 ID=mRNA_H-paniculata_contig3222.8678.1|Name=mRNA_H-paniculata_contig3222.8678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5201bp|location=Sequence derived from alignment at H-paniculata_contig3222:1020..6220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGGGGCTATCAACATCGTGACTGGAGAACAGTGAAAAGGAGGACAACA
GAAGAACCGACACCCATCGCTGTGGCCGCAAGCTATGTGGTATGCTATAC
AGCTGTTAGCTCTCTTTGCAACCGCGGTTTCGCAAGCAAGATCATTCGTG
CTCATACCTACAGTATCCTCGGCCTTCAGAGCTACGGTGGCGCTCAAGAC
ACACTTTGCTGTTGCCTCCTCAAGGGTCTCTAGGGGAGAGAAGTCTGCTT
TAAGGATGGCCGAAGAGGGATTTGGCGTGCCATTAACGGTGAGAATCTAT
CTTCTTCTCACGACGGTAGCACCTTGATGTAATCAGGAATTTCTTCTGTC
GTTTTGCCGGTCTCGCTTGTCAGTTTTCAGAGAGAAACATGTGCAAAGCA
TGGTACGGTAGCGCGTGGTGCGATTTGCGTAGCGCTGACGTTCGAGACAT
GAAAACATCACATGCTCCTCGTCGTGTAAAGGTAAGCCGTACATATACGA
AGATGGAACAGGGAAGTTTGGCACGACAATTATTGAAACCTGTCCTTTGA
TTCACCTAATACGTAAGGTTAGTTGCTCTTAGTCCGCCTATCCGTTGGCC
TATGGTACCACTTCCCCGTCGTTCTATCAATACAGTGAAAACAAGTACAC
CACGAGTGTTACAAAATATTTTGAATCCACTCTCAGACAAGAAGCGGCTT
GTGAAATCTTCAATAGCCCACACCCACGATCTACTGTTGTGTCATTCATA
TTCTTTTCGCCTAGCAACTAACTACGTCATTGCCTGCACCCCTGCACGCG
CTCGGCCATGCACCATCTCAAAACCTGCCGGTGCTTTCGAAGCTCTGAGC
CCAACCGGACACCCGCCTCTCTCTGTAGTCTTGAACGTCATGAATAGTTT
TCTCTGGCATGTGCCAGTCGCTGTTTCACCACCCTCTTGCGTTGAAAATT
GAAATGATTGATGAAGTTAACCGGAAAAAGTAACCCTTCGGGTACCGATC
TCCACATGGTTCGATCCCCACCTGATCCAATCCCAACCCGAAGAAATAAG
GGAAGGTAACACCTAAGATATGAATACGGGGATGTGAAGCCGTAGAGACA
GTATATATATATATATATATATATATATATTCAGGGCACAGGCAAGGTGT
TGGCTTAGTTCTGTGCACAACAGCTGCAGCGCTGGGCACCTTTTGGCAGA
TTTCAGAAACGATTGTTGATCCGAACGTGCCTCCGGCGCTCACAGGGTTA
ATTACTGCGCTATCTATCTGAAATTATCCCTTACTTTACCGCCCCCGCCC
TCCGATCAATTGGAACTGTATTGAATTTTGTGGAGGCGGTGCTTCTGGCG
TCTGTCTCAAAACGACAACCTGCAACCGTCTTTCTTTTCTTTTTTCTCAC
AGGTTGGCACGGACGCCCCCGCGTTCACGGTGAACGACCAGGACGAAAAG
GAAGTCACCCTTGCGTCATTCAAGGGCGAGAAGAACGTGGTGGTGTATTT
CTACCCCAAGGACGACACGGTACAATTAAAGTGCAAATGTATACAATATG
TAAAGCATTTTTTTCATTTTTAATAATGATGATAATACAGATGCCCAAAA
CGATTCGCGCGTCGGTGTATTCACGTTGCGGTTACTTCGAAGTTCGGAAT
TTTTATCTACCGTGTGTAGCGGCCTTGCGGTAATCGCCTACTGTTCCCCC
GCTGTTCCTGTTCTTACTTTGCTGAAATGAGGAAATCTCGCCCAGAAATC
TCATTGTAGGGTAAAAAGTCTCAACCTGTACACATCTGTTTTGATCCTTT
TAAACAACCTCCCCCTCCCTATTGCTGTCGCGTGCTGTTGAATATGAAAA
CATGTTATACCTCACTCGCAACACCCCCTTCACGACGAGTAAGAAATGGG
CCGGACGAACGACAAACACCGAAAGGAATGTCTCATGAGCGTCTCGCGGG
ACTCACAGTCACGACGTGTCTTGTTTCTTACGTCAGTGTTTCGTTCCAAT
TCTCAACTCTGACGGGATCATTTTTTACTCTCTTTTTTTTGTGTCTATTT
CGTCCTTGTGTCTCTCTGTTGACACACGCTTTCTGTGGATCCGACCTGGG
CATCTGTGATGCACTCTTTCACCGGGTATGTGTCGTGCTGCTTTCCCCCG
TCTCAATCAATCAACAAGTCTGGCTGCACCAAAGAGGCTTGCACGTGAGT
GAGGATCCCTTATCCGGCCAACTTCGCAGGAGTATATCCTTCCGCAAGTA
AATTCCGCTCCCCCCCCCACAACTGTATTTGTCTGACCTGCCGTCTTGTT
TGACGAGTGTCGCGTTTTGAGTTTTCGGTGACCTGAAGAATTTCTGTTTT
CTGACATCGTGAACGTGAGGGGAATAGAGCAAGACGGCAAAAATAGTGTG
AACAAGATTTCGCGCATGAACAAATGGTCGTTTTCCACACCGCTTTTGCA
GTTTTTTATTCTGCTATTATTTTGGTAATATGCAGTTGAATCCCTGAGCA
GCCTCCTTTCAACAGAATGCTCTGATGTTTGCTCGAGCCTCTCCAGGGTC
CGCTCACCTCTTATGATATTTCCCCCTTCAAAAACTTTTTAGCGTGGGCA
CCCGAAATCAAACAGCGGTTACTTTTTTTGGGTTCCAAAGTTGATGTTAT
ATTTTATCGTATTACTTTCGCTCGAGATACTAGTAGCTAGTAGTGTGCGG
AAACAAGCCCCCTCCCTACACACGCCAAATCGTGCACTTTGATTTCGGCC
ATATGATATGCTCGCGTTTTGTTGTTGAACCAATTGTGAAAGGTCTGACA
TTCATTGTCCAATCGTGTCGAATGTGTTTAGCGAGAGAGGCAGCGTTAAG
AAGTAGTAACCTGTTTATATTAGTATCGCGATGGGTGTGGTTAACGGCGC
AGATTCCGCGACCTTAAGACGGAGTACGACGCGCTCGACTGTGTGGTGCT
GGGCGTGAGCGCCGACGACGAAGCGAGCCACGTGAACTTCATTGAGAAAC
TAGGCTTGAATTTCAGCCTTCTTGCCGACACCAACAAGTGAGTGCTGCAA
AGAAAAGTAAATGGTCAGTCGGTCGGTCGATGGACTTTGTCGAGTTAAAG
TAAAAATTACTGTCGCAACGTACTAAAGAGTAATAGTAACAGTAATAGAC
GCCTTCACTACACTGTAGAATGTTTAAATATTAGGGAACTGGAGCCTGAT
CAAGCAGTTTTTAGTGTTTTTAGCTTTGCTTCGCCGGTGCACTCTTGTAA
CGGGGTGCTGTACAGGTTGCGGACAGTGTGGTCGGCATATGAAGGTTATG
TGTGAAGAAGACCAAGATATTTTCACCTCTAGTGTTAGTATTAATATGCA
CTAGAATACGATACTTACGAAAAACTGAAACGCTCCATGGTATCTATTAT
GGAGGCAGGGACCTCCATCTTAGTCTGTGTTGTAGCCTTTTGTCTGTGTG
CTTTTTCGCCCTAAGGCTGTGCCCGGACCCGTCGGGCATGCTATGCCAGA
GCGTTATTTTGCTTGCTTGCAGCGTGAAGGTCGTTGGCCACGGATAGTGT
TGCGTCCTATTTGGTCTCTCAATTACCCGAATACATTTCGAACACAGGAC
GTTGGTGAAGGCCTACGGGGCTACTAAGCCAGGAGATAAGATCCAGCGGA
GCACGGTGCTGGTGGACAAGGAGGGGAAGGTGGCTGCGGTGTGGAACCCG
GTGAGTACGTTACTTGTTCAGGTTTCTCTTCCTTCGTCTGTCCCTCCACC
TTGATGTAACAGTTGGCAGTTGGACCGCGGCGTGAGATCTCCATGCATCT
GATAAGAACACAAGTGGGCCCTGGTAAACCGATTTTTGTGGATATGAGGT
CTCCTGCAGTGCCGATCCCGAACCTTGGTGGTCAAGTAGTCGAGGGCAAA
CACTGGCCGGTAGCGTTACCGTGCAAAGCGCATACTTTCGCCCTTCTCCG
AGACCATGCAGCAGTAGCACCAAACAGCCTTTGTAATTTTTGTCGTGGTG
TTGAAAAGGGCGAGGGTGGACGATAGATAAAATACCGCGACGTCTCGTTG
AGGGGTCTTGTATAGTATTTTTTTGGCCTTTAGCTCATGGAGCCACTGTC
GCCGCTGGAACAAGAATACCAACGGAACTTCTCCTCTTGTTGCTGTGACT
GCCCGTCCGTTGTTGGCAGGTTACCACGGCGGAGACTCACCCAAATGACG
TCTTGGCAAAGCTCAGGGATATTTTGTAGGAAAGGCGTATTTATAAGCTG
TGATCGGGTCAAAGATACGTGAATTGATGAAGGGTTTTTGCCCAAATCGA
TGTTCTTCGTGTTGTGAGGGTATTTTCGAGGGGTCCAGGGGGAGGCAGGT
ATATTTGTCTGCTCAATTCGAAGCTGTGACGCTCCCGTTCAATGTTGAGG
GGGCAAGCCGGTGCCTGCTGGGCTAATAGTATCGACTTTTTACTTGTGCC
AGCGTCGACTTGCTGATGGTGGACGCAAAAGTCAAGAGGAGATGAAAGAA
GAAACGCTCACCTCTGCTACGCCCACCAAAAGACGAGAACTTTTTTTCGG
TGGAGCAAGATGGGAATGTGATGAAGTGGACCAAGTAACGCGACTAGAAA
TTCGTGTGGATCCTTGACTTAAGATCGACGAGGGGGAGTTAGAAAACACT
CAAGACAACGTTGTGGTCATTGCCCTGCATTGACATAAGTCGGTCGGCCC
TGAAAGCTAGGACTGAATAATAAAAATGAGTAAGAATTTTTGGTCTAGAG
GAGTGTGGAAACCGTCCATCCTTCCTCATTTAGGAGACCTTTTTAATGGT
GATGAATAATTTGTGTGGGGATAGACCTTGACAGGTGAAGCCTCTCGTTC
GGCTGCGTTCTATCCGGGAGTGTGCTATATTAGTCCTCTTGACGTGTCCG
GACGCTATTCCGCCGCCAGAAATGAATTTCAGGGTATGTAGAGGGAGGGC
TCTAAAGCCTTGTTTCGATTTTGTATAAAAAGATAGTGCATAATGGCCAA
ATGCCGAAATCGTCACTCGATATTGTTTGATCGTTTCACGTGGCATTTCC
GCGCTCGAATGAGTGACAAACCATGTACATTCGAAAGCTGATTTCCCCAA
GCTTCTCAGATGGGCTCTTGGAGTTTTTTGGGGGGGGGTTGCATTATGAC
CAAAACAGAGGATTAAATTGGATCATGTTGTGCTCCGCAATATTCTAAAA
C
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Coding sequence (CDS) from alignment at H-paniculata_contig3222:1020..6220+

>mRNA_H-paniculata_contig3222.8678.1 ID=mRNA_H-paniculata_contig3222.8678.1|Name=mRNA_H-paniculata_contig3222.8678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig3222:1020..6220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTATGCTATACAGCTGTTAGCTCTCTTTGCAACCGCGGTTTCGCA
AGCAAGATCATTCGTGCTCATACCTACAGTATCCTCGGCCTTCAGAGCTA
CGGTGGCGCTCAAGACACACTTTGCTGTTGCCTCCTCAAGGGTCTCTAGG
GGAGAGAAGTCTGCTTTAAGGATGGCCGAAGAGGGATTTGGCGTGCCATT
AACGATGTGGTATGCTATACAGCTGTTAGCTCTCTTTGCAACCGCGGTTT
CGCAAGCAAGATCATTCGTGCTCATACCTACAGTATCCTCGGCCTTCAGA
GCTACGGTGGCGCTCAAGACACACTTTGCTGTTGCCTCCTCAAGGGTCTC
TAGGGGAGAGAAGTCTGCTTTAAGGATGGCCGAAGAGGGATTTGGCGTGC
CATTAACGGTTGGCACGGACGCCCCCGCGTTCACGGTGAACGACCAGGAC
GAAAAGGAAGTCACCCTTGCGTCATTCAAGGGCGAGAAGAACGTGGTGGT
GTATTTCTACCCCAAGGACGACACGGTTGGCACGGACGCCCCCGCGTTCA
CGGTGAACGACCAGGACGAAAAGGAAGTCACCCTTGCGTCATTCAAGGGC
GAGAAGAACGTGGTGGTGTATTTCTACCCCAAGGACGACACGTCTGGCTG
CACCAAAGAGGCTTGCACTCTGGCTGCACCAAAGAGGCTTGCACATTCCG
CGACCTTAAGACGGAGTACGACGCGCTCGACTGTGTGGTGCTGGGCGTGA
GCGCCGACGACGAAGCGAGCCACGTGAACTTCATTGAGAAACTAGGCTTG
AATTTCAGCCTTCTTGCCGACACCAACAAATTCCGCGACCTTAAGACGGA
GTACGACGCGCTCGACTGTGTGGTGCTGGGCGTGAGCGCCGACGACGAAG
CGAGCCACGTGAACTTCATTGAGAAACTAGGCTTGAATTTCAGCCTTCTT
GCCGACACCAACAAGACGTTGGTGAAGGCCTACGGGGCTACTAAGCCAGG
AGATAAGATCCAGCGGAGCACGGTGCTGGTGGACAAGGAGGGGAAGGTGG
CTGCGGTGTGGAACCCGGACGTTGGTGAAGGCCTACGGGGCTACTAAGCC
AGGAGATAAGATCCAGCGGAGCACGGTGCTGGTGGACAAGGAGGGGAAGG
TGGCTGCGGTGTGGAACCCGGTTACCACGGCGGAGACTCACCCAAATGAC
GTCTTGGCAAAGCTCAGGGATATTTTGTAGGTTACCACGGCGGAGACTCA
CCCAAATGACGTCTTGGCAAAGCTCAGGGATATTTTGTAG
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