mRNA_H-paniculata_contig32183.8664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32183.8664.1
Unique NamemRNA_H-paniculata_contig32183.8664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32183.8664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32183contigH-paniculata_contig32183:403..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size759
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.1717865-CDS-H-paniculata_contig32183:402..11611622929993.1717865-CDS-H-paniculata_contig32183:402..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32183 403..1161 +
1691481101.9076974-CDS-H-paniculata_contig32183:402..11611691481101.9076974-CDS-H-paniculata_contig32183:402..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32183 403..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32183.8664.1prot_H-paniculata_contig32183.8664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32183 403..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32183.8664.1

>prot_H-paniculata_contig32183.8664.1 ID=prot_H-paniculata_contig32183.8664.1|Name=mRNA_H-paniculata_contig32183.8664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
TRESGRSVHAPTVEAAGSEDRLHRAEGGQSPPWESSQPLGQAAAQPNMVG
QDQRIISDGARGASPDGESQGVFGRRNVEGNFASPMPATMMGQFRPKTPS
FSGNWEHFAQFEIEMINFAKMHGCEEAFVRDVFVPVGDTEKSLESLVAEG
YSRRRVESHSWAWQLLCSALRGEDLKHMMGATSPRQVWVRLHEWYMPQTQ
GGVGELYKSFTELEMSVDTNPVGFMAELEVIARRLSAKGCVITQNQVFTR
FLY
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mRNA from alignment at H-paniculata_contig32183:403..1161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32183.8664.1 ID=mRNA_H-paniculata_contig32183.8664.1|Name=mRNA_H-paniculata_contig32183.8664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=759bp|location=Sequence derived from alignment at H-paniculata_contig32183:403..1161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGGGAGTCCGGTAGGAGCGTGCATGCTCCTACTGTAGAGGCAGCCGG
GTCAGAAGACCGACTGCACAGAGCAGAAGGTGGGCAGTCACCACCCTGGG
AATCAAGTCAACCCCTGGGACAGGCTGCCGCACAGCCGAACATGGTTGGG
CAAGATCAGCGCATCATCAGTGACGGGGCTAGGGGTGCAAGCCCCGACGG
TGAGTCACAGGGTGTGTTTGGTAGGAGGAATGTAGAAGGAAACTTCGCGT
CGCCAATGCCTGCCACAATGATGGGTCAATTTAGACCAAAGACCCCATCC
TTTTCTGGTAACTGGGAACATTTTGCCCAGTTCGAGATCGAAATGATTAA
CTTCGCCAAGATGCATGGGTGTGAAGAAGCTTTCGTGAGAGATGTGTTTG
TGCCAGTGGGTGACACAGAAAAATCGCTGGAAAGTTTAGTGGCTGAAGGT
TACAGCAGACGGCGAGTGGAAAGTCACAGTTGGGCATGGCAACTTTTATG
TTCTGCGTTGAGAGGAGAAGACTTGAAGCATATGATGGGAGCCACGTCCC
CTCGGCAGGTCTGGGTTCGGCTGCATGAGTGGTACATGCCCCAAACTCAG
GGTGGAGTTGGAGAACTCTATAAATCTTTTACTGAGCTGGAAATGTCAGT
GGACACTAACCCGGTAGGATTTATGGCTGAGCTCGAAGTTATTGCCCGAC
GACTCAGCGCAAAAGGCTGTGTGATCACACAAAATCAAGTTTTCACCCGC
TTCTTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig32183:403..1161+

>mRNA_H-paniculata_contig32183.8664.1 ID=mRNA_H-paniculata_contig32183.8664.1|Name=mRNA_H-paniculata_contig32183.8664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig32183:403..1161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGGGAGTCCGGTAGGAGCGTGCATGCTCCTACTGTAGAGGCAGCCGG
GTCAGAAGACCGACTGCACAGAGCAGAAGGTGGGCAGTCACCACCCTGGG
AATCAAGTCAACCCCTGGGACAGGCTGCCGCACAGCCGAACATGGTTGGG
CAAGATCAGCGCATCATCAGTGACGGGGCTAGGGGTGCAAGCCCCGACGG
TGAGTCACAGGGTGTGTTTGGTAGGAGGAATGTAGAAGGAAACTTCGCGT
CGCCAATGCCTGCCACAATGATGGGTCAATTTAGACCAAAGACCCCATCC
TTTTCTGGTAACTGGGAACATTTTGCCCAGTTCGAGATCGAAATGATTAA
CTTCGCCAAGATGCATGGGTGTGAAGAAGCTTTCGTGAGAGATGTGTTTG
TGCCAGTGGGTGACACAGAAAAATCGCTGGAAAGTTTAGTGGCTGAAGGT
TACAGCAGACGGCGAGTGGAAAGTCACAGTTGGGCATGGCAACTTTTATG
TTCTGCGTTGAGAGGAGAAGACTTGAAGCATATGATGGGAGCCACGTCCC
CTCGGCAGGTCTGGGTTCGGCTGCATGAGTGGTACATGCCCCAAACTCAG
GGTGGAGTTGGAGAACTCTATAAATCTTTTACTGAGCTGGAAATGTCAGT
GGACACTAACCCGGTAGGATTTATGGCTGAGCTCGAAGTTATTGCCCGAC
GACTCAGCGCAAAAGGCTGTGTGATCACACAAAATCAAGTTTTCACCCGC
TTCTTGTACACGAGGGAGTCCGGTAGGAGCGTGCATGCTCCTACTGTAGA
GGCAGCCGGGTCAGAAGACCGACTGCACAGAGCAGAAGGTGGGCAGTCAC
CACCCTGGGAATCAAGTCAACCCCTGGGACAGGCTGCCGCACAGCCGAAC
ATGGTTGGGCAAGATCAGCGCATCATCAGTGACGGGGCTAGGGGTGCAAG
CCCCGACGGTGAGTCACAGGGTGTGTTTGGTAGGAGGAATGTAGAAGGAA
ACTTCGCGTCGCCAATGCCTGCCACAATGATGGGTCAATTTAGACCAAAG
ACCCCATCCTTTTCTGGTAACTGGGAACATTTTGCCCAGTTCGAGATCGA
AATGATTAACTTCGCCAAGATGCATGGGTGTGAAGAAGCTTTCGTGAGAG
ATGTGTTTGTGCCAGTGGGTGACACAGAAAAATCGCTGGAAAGTTTAGTG
GCTGAAGGTTACAGCAGACGGCGAGTGGAAAGTCACAGTTGGGCATGGCA
ACTTTTATGTTCTGCGTTGAGAGGAGAAGACTTGAAGCATATGATGGGAG
CCACGTCCCCTCGGCAGGTCTGGGTTCGGCTGCATGAGTGGTACATGCCC
CAAACTCAGGGTGGAGTTGGAGAACTCTATAAATCTTTTACTGAGCTGGA
AATGTCAGTGGACACTAACCCGGTAGGATTTATGGCTGAGCTCGAAGTTA
TTGCCCGACGACTCAGCGCAAAAGGCTGTGTGATCACACAAAATCAAGTT
TTCACCCGCTTCTTGTAC
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