mRNA_H-paniculata_contig32120.8647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32120.8647.1
Unique NamemRNA_H-paniculata_contig32120.8647.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32120.8647.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.530e-43
Identity = 81/119 (68.07%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 LGVPSTSEPQTPLDYTRDTVEKLQLAYELARRNLRERSDKQQEENRKISVPSFVVDDRVLLHRPPSESVSPNPKLVSPWRGPYTVQAQMSPITYRVSKNGEHAETTVHLGRMKSYHPPS 357
            LGVPST  PQ+ LDY+R TVE LQLAYELARRNL+ERS KQ + N K+S PSF   D+VL+HRP +ES  PNPKL+SPW GPYTV+AQ+SP+ YRVSK  E  ETTVHLGRMK Y  P+
Sbjct:  956 LGVPSTPAPQSRLDYSRRTVENLQLAYELARRNLKERSSKQADANEKLSFPSFKFGDQVLVHRPYTESAGPNPKLISPWHGPYTVRAQLSPVIYRVSKPNEPTETTVHLGRMKPYIAPT 1074
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BLAST of mRNA_H-paniculata_contig32120.8647.1 vs. uniprot
Match: A0A6H5JGF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.350e-40
Identity = 76/119 (63.87%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 LGVPSTSEPQTPLDYTRDTVEKLQLAYELARRNLRERSDKQQEENRKISVPSFVVDDRVLLHRPPSESVSPNPKLVSPWRGPYTVQAQMSPITYRVSKNGEHAETTVHLGRMKSYHPPS 357
            LGVP+T  PQ+ LD++R TVE LQLAYELARRNL+ER+DKQ  EN K+S PSF + D+VLLHRP +E+  PNPKLVSPW GP+TV++Q+SP+ YRVSK  +  E TVHLGRMK +  P+
Sbjct:  765 LGVPATDAPQSRLDHSRRTVENLQLAYELARRNLKERTDKQAVENEKLSFPSFKMGDQVLLHRPYNETDGPNPKLVSPWHGPFTVRSQISPVIYRVSKPNDPTEVTVHLGRMKPFVQPT 883
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BLAST of mRNA_H-paniculata_contig32120.8647.1 vs. uniprot
Match: A0A6H5JU37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU37_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.500e-23
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:    1 LGVPSTSEPQTPLDYTRDTVEKLQLAYELARRNLRERSDKQQEENRKI-SVPSFVVDDRVLLHRPPSESVSPNPKLVSPWRGPYTVQAQMSPITYRVSKNGEHAETTVHLGRMKSYH 348
            LG+P          +T+ T E LQ AYELAR+NL ER+ KQ   N K+   P F    +VLL++P  +S  PNPKL+ PWRGPYT+ +Q+SP+ YRV +  E  E +VHL  +K YH
Sbjct:  730 LGIPHVGSSADTEVFTKTTRENLQTAYELARQNLSERAAKQAAHNDKLPQFPVFQPGQQVLLYKPYHDSDGPNPKLLLPWRGPYTICSQLSPVVYRVKRPNETRELSVHLAHLKQYH 846
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BLAST of mRNA_H-paniculata_contig32120.8647.1 vs. uniprot
Match: A0A5B7DLP2_PORTR (Uncharacterized protein n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DLP2_PORTR)

HSP 1 Score: 51.2 bits (121), Expect = 8.890e-6
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 1 
Query:  133 NRKISVPSFVVDDRVLLHRPPSESVSPNPKLVSPWRGPYTVQAQMSPITYRVSKNGEHAETTVHLGRMKSYH 348
            +R++    +   DRV LH P       +PKL SPW+GPYTV A  S +TY++ + G      VH  R+  YH
Sbjct:    6 DRRMRDARYAEGDRVWLHNPRRRR-GLSPKLQSPWKGPYTVMAVPSAVTYKM-RRGHKRALVVHADRLWRYH 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32120.8647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K112_9PHAE1.530e-4368.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGF6_9PHAE1.350e-4063.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU37_9PHAE2.500e-2347.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5B7DLP2_PORTR8.890e-638.89Uncharacterized protein n=1 Tax=Portunus trituberc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32120contigH-paniculata_contig32120:3..359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.9791195-CDS-H-paniculata_contig32120:2..3591622929990.9791195-CDS-H-paniculata_contig32120:2..359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32120 3..359 +
1691481100.9180012-CDS-H-paniculata_contig32120:2..3591691481100.9180012-CDS-H-paniculata_contig32120:2..359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32120 3..359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32120.8647.1prot_H-paniculata_contig32120.8647.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32120 3..359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32120.8647.1

>prot_H-paniculata_contig32120.8647.1 ID=prot_H-paniculata_contig32120.8647.1|Name=mRNA_H-paniculata_contig32120.8647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
LGVPSTSEPQTPLDYTRDTVEKLQLAYELARRNLRERSDKQQEENRKISV
PSFVVDDRVLLHRPPSESVSPNPKLVSPWRGPYTVQAQMSPITYRVSKNG
EHAETTVHLGRMKSYHPPS
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mRNA from alignment at H-paniculata_contig32120:3..359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32120.8647.1 ID=mRNA_H-paniculata_contig32120.8647.1|Name=mRNA_H-paniculata_contig32120.8647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig32120:3..359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGTGTTCCGTCCACTTCTGAACCCCAAACCCCGCTTGATTACACGCG
GGATACCGTCGAGAAATTGCAGCTAGCTTATGAGCTAGCGCGCCGTAATC
TCAGAGAGCGGTCGGATAAGCAACAGGAAGAAAACCGTAAAATTTCTGTC
CCTAGCTTCGTCGTTGACGATCGTGTTTTGTTACATCGCCCACCCTCTGA
GTCCGTCAGTCCGAACCCCAAGCTTGTCAGTCCTTGGCGCGGTCCGTACA
CCGTCCAAGCACAAATGTCTCCCATTACGTACCGCGTTTCCAAAAATGGT
GAACACGCAGAGACCACCGTCCACCTGGGTCGGATGAAATCATACCACCC
ACCGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig32120:3..359+

>mRNA_H-paniculata_contig32120.8647.1 ID=mRNA_H-paniculata_contig32120.8647.1|Name=mRNA_H-paniculata_contig32120.8647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig32120:3..359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGTGTTCCGTCCACTTCTGAACCCCAAACCCCGCTTGATTACACGCG
GGATACCGTCGAGAAATTGCAGCTAGCTTATGAGCTAGCGCGCCGTAATC
TCAGAGAGCGGTCGGATAAGCAACAGGAAGAAAACCGTAAAATTTCTGTC
CCTAGCTTCGTCGTTGACGATCGTGTTTTGTTACATCGCCCACCCTCTGA
GTCCGTCAGTCCGAACCCCAAGCTTGTCAGTCCTTGGCGCGGTCCGTACA
CCGTCCAAGCACAAATGTCTCCCATTACGTACCGCGTTTCCAAAAATGGT
GAACACGCAGAGACCACCGTCCACCTGGGTCGGATGAAATCATACCACCC
ACCGTCGCTGGGTGTTCCGTCCACTTCTGAACCCCAAACCCCGCTTGATT
ACACGCGGGATACCGTCGAGAAATTGCAGCTAGCTTATGAGCTAGCGCGC
CGTAATCTCAGAGAGCGGTCGGATAAGCAACAGGAAGAAAACCGTAAAAT
TTCTGTCCCTAGCTTCGTCGTTGACGATCGTGTTTTGTTACATCGCCCAC
CCTCTGAGTCCGTCAGTCCGAACCCCAAGCTTGTCAGTCCTTGGCGCGGT
CCGTACACCGTCCAAGCACAAATGTCTCCCATTACGTACCGCGTTTCCAA
AAATGGTGAACACGCAGAGACCACCGTCCACCTGGGTCGGATGAAATCAT
ACCACCCACCGTCG
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