mRNA_H-paniculata_contig321.8639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig321.8639.1
Unique NamemRNA_H-paniculata_contig321.8639.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A6H5KGL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL5_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 3.390e-71
Identity = 154/342 (45.03%), Postives = 190/342 (55.56%), Query Frame = 2
Query:  143 GTVGAVAPGELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDIGDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLI-----------------QCGDIYPAIKG-----------------EKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFAD--------------QRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWNV 1024
            GTVG V PG LLGP++GL FS+GGD+LF+  GSS+R Y V SG  L + RVF  GV V G+D+G E   GA+FGDK + IV+GV  P+             A D    SWF+ VA +P L DRVWDARLI                 + G I     G                 + G+ +GE   + +VA ALAHN VEVW W     P+R+ +++ GDPCLLYHARLWGR LGELRVAAGT FNQ+LVW P+       +              Q  GK  D +        GG D       LLRL+ HEGV+FR++WREDG R+ SASDDRTVRVW+V
Sbjct:   13 GTVGDVLPGPLLGPVMGLAFSTGGDLLFSCSGSSLRVYDVRSGAPLSATRVFSPGVTVHGIDVGRESF-GAIFGDKCVRIVDGV--PTR------------AGDTATCSWFRGVASLPELGDRVWDARLIGKSGKGTGEGGAKEAKGRTGGIGRGAVGGVRRIGAVPRQGARKEVDGGRRRGERAGVGMVAVALAHNSVEVWDWAGQARPLRIHQAQGGDPCLLYHARLWGRALGELRVAAGTAFNQVLVWCPSQAKNFGPEGVHRKGGEGHGTVGQGDGKPGDPEGVPPCLPGGGVD-------LLRLKGHEGVIFRVAWREDGTRLVSASDDRTVRVWDV 332          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: D8LMQ4_ECTSI (Nucleotide binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ4_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.750e-67
Identity = 152/339 (44.84%), Postives = 193/339 (56.93%), Query Frame = 2
Query:  143 GTVGAVAPGELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDIGDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLI--------------QCGDIYPAI-----------------KGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFAD--QRQGKRTDLDVRGQWQRN-GGADQIRS-----GRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWNVVDEHDG 1042
            GTVG V PG LLGP++GL FS+GGD+LF+  GSS+R Y V SG  L + RVF  GV V G+D+G E   GA+FGDK + IV+GV             TG  A D    SWF+ VA +P L+DRVWDARLI              + G I                     + + G+ +GE   + +VA ALAH  VEVW W     P+R+ R++ GDPCLLYHARLWGR LGELRVAAGT FNQ+LVWSP        +  +R+G      V GQ   N G  +++       G ++LRL+ HEGV+F     EDG R+ SAS+DRTVRVW+V    +G
Sbjct:   13 GTVGDVLPGPLLGPVMGLAFSTGGDLLFSCSGSSLRVYDVRSGAPLSATRVFSPGVTVHGIDVGRESF-GAIFGDKCVRIVDGV------------PTG--AGDTAACSWFRGVASLPDLEDRVWDARLIGKSGRGTGEGGGKGRTGGIXXXXXXXXXXXXXAPRQGVGKESDGGRRRGERAGVGMVAVALAHTSVEVWNWAGQARPLRIHRAQGGDPCLLYHARLWGRALGELRVAAGTAFNQVLVWSPGQPTNFVPEGVRRKGGEGHGTV-GQGDGNPGDPEEVPPCLPGRGVDVLRLKGHEGVIFS----EDGMRLGSASEDRTVRVWDVESPCEG 331          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A5D6Y0N1_9STRA (MIF4G domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0N1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.850e-24
Identity = 90/293 (30.72%), Postives = 130/293 (44.37%), Query Frame = 2
Query:  155 AVAPGELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDI----GDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWN 1021
            A  P E +G +  + FS+ G +LF   G +V  Y+  SG L+    VFP G+ + G D      D G+  A FG K + ++ G  LP          T   A D    +      R     D V+D R++      P +                +A  LAHN V++W+    E    +   +  + C+LY     GR++ EL VAAGTVF QIL+W P      FA    G+  D         + GA          RL +H GVLF++ W +D   +AS SDDRTV++W+
Sbjct:  457 AAEPLEYIGAVTLVRFSADGSLLFVGVGPAVSVYAAASGALVAQFGVFPRGI-LHGSDFVASSDDNGVVAAFFGQKRVALLRG--LPQ---------TLAQALDDDAVAAATAAQRTRSFGDWVFDVRVL-ISQTQPRL---------------ALAVGLAHNYVQIWE---PERDCVLRSVQCAERCILYALAFHGRSVDELVVAAGTVFQQILLWKP------FASSDDGRNDD---------DAGAVAP-----AQRLHSHNGVLFKLEWSDDASMLASVSDDRTVQLWS 698          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: H3GJ35_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJ35_PHYRM)

HSP 1 Score: 107 bits (266), Expect = 4.370e-22
Identity = 85/291 (29.21%), Postives = 124/291 (42.61%), Query Frame = 2
Query:  170 ELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSG-------VAVSGLDIGDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWN 1021
            + LG +  + FSS G +L+   G ++  YS  +G+LL    V   G       V + G         GA FG K +   +        N   T    +   +      F  + +     D V+D +L+           E   GK ES K+ LVA  LAHN V++W                 + C+LY     GR+L EL VA+GTVF QIL+W+P D                        NG  +   +     RL AH+GVLF+++W  D + +AS SDDRTV++W+
Sbjct:    7 DFLGAVTLVAFSSNGSLLYVGVGPTIFLYSTATGELLGEHEVLTRGILHGCDVVEILGSSTAKVEFAGAFFGQKRVSCFH--------NLPQTPEAAQGIEE------FAVLGKPKVFCDWVFDVQLLA---------DEFASGK-ESMKI-LVAVGLAHNLVQIWD-------------PCAERCILYALAFHGRSLDELVVASGTVFQQILLWNPMD------------------------NGSEEPNSAVEPAQRLHAHDGVLFKLAWSSDARSLASVSDDRTVQLWS 235          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: W4GGQ4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGQ4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.710e-21
Identity = 82/304 (26.97%), Postives = 137/304 (45.07%), Query Frame = 2
Query:  167 GELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDIGDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVW----NVVDEHDGSLSLPSNV 1066
            GE +G +  L FS+ G +L+A+ G ++  Y   +G + VS     S   + G+D+         FG K + +V+ +   +  N   +  +  IA +  C  W             + DARL+    +              +  + +VA  LAHN V +W  +       +   +  +  +LY   L+GR+L  L VAAGTVF  IL+W+P  TL+  +  +Q   +   V                    RL  H+GVLF+++W   G+++AS SDDR+V++W    N V   D +L+  +N+
Sbjct:    9 GEFVGAVTALHFSADGSLLYAAVGCTLYVYDTTNGTMFVSPLPIWSHGTIHGMDVAQS--LALCFGQKQLALVSALPTTTTSNVQSSSPSSIIATE--CMDW-------------ILDARLLVDDVVVDDT----------ALLLPMVAVGLAHNMVHIWDPST---RTTLQTFQCTERTILYAMGLYGRSLESLIVAAGTVFQHILLWAPP-TLSSSSSSQQPSNSVAQV------------------TQRLHQHDGVLFQLTWSSTGRQLASVSDDRSVQLWSNLTNDVGRDDVALARDANL 263          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A2D4BZ66_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZ66_PYTIN)

HSP 1 Score: 107 bits (266), Expect = 3.130e-21
Identity = 84/308 (27.27%), Postives = 129/308 (41.88%), Query Frame = 2
Query:  161 APGELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSG-------VAVSGLDIGDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGAT-GKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRA---GDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWNVVDEHDGSLS 1051
            A GE +G +  L FS  G +LF   G+++  Y   SG+LL +  VFP G       V +   +  +       FG K ++ V  V  P       T     ++     CQ W             V+D R++              +    S    +VA  LAHN +++W       PV+    R+    + C+LY    +GR   +L VAAGTVF Q+L+W+P D     AD+   ++                         RL  H+GV+F++ W  D +++AS SDDRTV++W+     D   S
Sbjct:   15 AKGEYIGAVTLLHFSHDGSLLFVGVGAALYVYDTRSGELLATYAVFPRGILHGRDYVRIPATNDREASSLAVFFGQKRLVCVRDV--PETREHVLTQRELQRVGVSKTCQDW-------------VFDVRILA------------EETTASSSAFPVVAIGLAHNYIQLWD------PVQNHVLRSVYCTERCILYSLSFFGRRSADLMVAAGTVFQQVLLWAPRDETHDQADRADPQQ-------------------------RLHGHDGVIFKLEWSSDARKLASVSDDRTVQLWSHAPSEDSESS 264          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A3R7YE74_9STRA (Uncharacterized protein n=3 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YE74_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.380e-21
Identity = 84/291 (28.87%), Postives = 127/291 (43.64%), Query Frame = 2
Query:  170 ELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDI----GDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRA---GDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWN 1021
            + LG +  L+FSS G +L+   G ++  Y+  +GKL+    V   G+ + G D           G  FG K +   +   LP            +   D        T+ +     D V+DA L+   D + +          E  K  LVA  LAHN V++W       PV     R+    + C+LY     GR+L EL VA+GTVF QIL+W+P +                        N   D   +   + RL AH+GV+F+++W  D + +AS SDDRTV++W+
Sbjct:    9 DFLGAVTLLSFSSDGSLLYVGVGPTIFLYATATGKLMSQHTVLTRGI-LHGCDFVRFPDTNAFAGVFFGQKRVSCFHN--LP------------QTPEDARTLEKLMTLGKPNVFCDWVFDAHLLT--DDFAS----------EQNKKLLVAVGLAHNFVQIWD------PVTRDILRSVQCAERCILYALAFHGRSLDELVVASGTVFQQILLWNPME------------------------NALKDVNTAIEPVQRLHAHDGVIFKLAWSSDARSLASVSDDRTVQLWS 242          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A833THE9_PHYIN (WD domain G-beta repeat n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833THE9_PHYIN)

HSP 1 Score: 104 bits (259), Expect = 2.440e-20
Identity = 91/316 (28.80%), Postives = 138/316 (43.67%), Query Frame = 2
Query:  170 ELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDIG-----DEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQ-SWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRA---GDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWNVVDEHDG-----SLSLPSNVTHS 1075
            E L  +  ++FS  G +L+   G +V  Y+ G+G+LL    V   GV + G DI      D+   GA FG K +       LP                +  C+      +A+     D V+D +L+     +   K E            L A  LAHN V++W       P+R    R+    + C+LY     GR+L EL VA+GTVF QIL+W+P +      + +    T ++                     RL AH+GVLF+++W  D + +AS SDDRTV++W+    H+G      L LP  +T +
Sbjct:   10 EFLSAVTLVSFSYDGSLLYVGVGPTVFLYATGTGQLLGKHEVLTRGV-LHGCDIVRLSALDKSFVGAFFGQKRVSCFQN--LPQTC-------------EAACELEELAVLAKPKVFCDWVFDVQLLTTD--FALTKNEN----------LLAAVGLAHNLVQIWD------PLRNDILRSVQCAERCILYALAFHGRSLDELVVASGTVFQQILLWNPME------NGKNALNTAVEP------------------AQRLHAHDGVLFKLTWSSDARSLASVSDDRTVQLWS----HNGIITAEQLHLPRTLTRA 263          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A484DQN5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQN5_BRELC)

HSP 1 Score: 103 bits (258), Expect = 3.280e-20
Identity = 90/311 (28.94%), Postives = 134/311 (43.09%), Query Frame = 2
Query:  110 NSI*VATMNDTGTVGAVAPGELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDI----GDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMS---RSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWN 1021
            N+I + + N   +  A    + LGP+  +TFSS G +L+   G ++  Y+  + + L    VF  G+ + G DI      E   GA FG K +             F         AR          +       D V+D +L+       AI+ E            LVA  LAHN V++W       PVR S    ++  + C+LY     GR+L EL VA+GTVF QIL+W+P +     A     K   + ++                   RL AH GVLF++ W  D + +AS SDDR+V++W+
Sbjct:    3 NTIEITSQNGPSS-SAFTKQDYLGPVTLVTFSSCGSLLYVGVGPTIFLYATTTSEFLGKHDVFTRGI-LHGCDIVLHAASESFVGAFFGQKRVSC-----------FQQLPQNPDAARS---HEQLAVLGTSKVFCDWVFDVQLLTSE--ITAIEDEN----------LLVAVGLAHNLVQIWD------PVRNSILRTAQCAERCILYSLAFHGRSLDELIVASGTVFQQILLWNPMEITNDVA-----KAAIMPIQ-------------------RLHAHNGVLFKLVWSSDARSLASVSDDRSVQLWS 255          
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Match: A0A8B9A034_PHODC (uncharacterized protein LOC103721829 isoform X1 n=3 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9A034_PHODC)

HSP 1 Score: 103 bits (258), Expect = 3.510e-20
Identity = 95/319 (29.78%), Postives = 141/319 (44.20%), Query Frame = 2
Query:  167 GELLGPIVGLTFS------SGGDILFASCGSSVRAYSVGSGKLLVSRRVFPSGVAVSGLDIG-----DEGLTG-------AVFGDKSILIVNGVVLPSLFNFSWTGATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGD--------IYPAIKGEKGKGKGESRKMRLVAAALAHNCVEVWQ--WNNVEGPVRMSRSRAGDPCLLYHARLWGRTLGELRVAAGTVFNQILVWS--PADTLALFADQRQGKRTDLDVRGQWQRNGGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWNVVDE 1033
            G  LG I  L+F       S   +L A  GS +  Y V SG LL S  VF  GV V G+ +      +E  +        AV+G++ +          LF      A+    RDG      + V R+P  D  V DA  ++           I   +  +      E     ++   L+ N V +W    +NV     +SR ++ + CLLY  R+WG ++  LRVA+GT+FN+I++W   P   L L    ++     +     W      DQ     +L RL  HEG +FRI+W  DG ++ S SDDR+ RVW + D+
Sbjct:   14 GPYLGEISALSFLPLPSCLSSFPLLLAGTGSQLLVYDVESGNLLNSFDVF-QGVRVHGISLRFPNPKEESSSPDTACFLIAVYGERRV---------KLFLLRVDAASSGRVRDGAGVG-LKLVFRLPAFDHWVLDACFLKVNFGISHNWIFIGWCLLFDSDSWWQEDS---ILVLGLSDNSVALWDLSMSNV-----VSRVKSSERCLLYSMRMWGDSMKTLRVASGTIFNEIIIWKLIPRAPLPLSKSAKESYNPSVSGTKSWPH----DQQYMALHLSRLTGHEGSIFRITWSADGSKLVSVSDDRSARVWILSDQ 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig321.8639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGL5_9PHAE3.390e-7145.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ4_ECTSI1.750e-6744.84Nucleotide binding protein, putative n=1 Tax=Ectoc... [more]
A0A5D6Y0N1_9STRA3.850e-2430.72MIF4G domain-containing protein n=1 Tax=Pythium br... [more]
H3GJ35_PHYRM4.370e-2229.21Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W4GGQ4_9STRA1.710e-2126.97Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2D4BZ66_PYTIN3.130e-2127.27Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3R7YE74_9STRA9.380e-2128.87Uncharacterized protein n=3 Tax=Peronospora effusa... [more]
A0A833THE9_PHYIN2.440e-2028.80WD domain G-beta repeat n=2 Tax=Phytophthora infes... [more]
A0A484DQN5_BRELC3.280e-2028.94Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A8B9A034_PHODC3.510e-2029.78uncharacterized protein LOC103721829 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig321contigH-paniculata_contig321:2287..7368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.2
Seed ortholog evalue9.4e-62
Seed eggNOG ortholog2880.D8LMQ4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell cycle
EggNOG OGsKOG0974@1,KOG0974@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1217
Cds size1086
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.146061-UTR-H-paniculata_contig321:2286..23501622929989.146061-UTR-H-paniculata_contig321:2286..2350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig321 2287..2350 +
1691481099.9892733-UTR-H-paniculata_contig321:2286..23501691481099.9892733-UTR-H-paniculata_contig321:2286..2350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig321 2287..2350 +
1622929989.1591172-UTR-H-paniculata_contig321:3142..32081622929989.1591172-UTR-H-paniculata_contig321:3142..3208Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig321 3143..3208 +
1691481100.0082514-UTR-H-paniculata_contig321:3142..32081691481100.0082514-UTR-H-paniculata_contig321:3142..3208Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig321 3143..3208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929989.174443-CDS-H-paniculata_contig321:3208..34251622929989.174443-CDS-H-paniculata_contig321:3208..3425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 3209..3425 +
1691481100.0250645-CDS-H-paniculata_contig321:3208..34251691481100.0250645-CDS-H-paniculata_contig321:3208..3425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 3209..3425 +
1622929989.1969247-CDS-H-paniculata_contig321:3963..42561622929989.1969247-CDS-H-paniculata_contig321:3963..4256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 3964..4256 +
1691481100.037223-CDS-H-paniculata_contig321:3963..42561691481100.037223-CDS-H-paniculata_contig321:3963..4256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 3964..4256 +
1622929989.213421-CDS-H-paniculata_contig321:4549..46901622929989.213421-CDS-H-paniculata_contig321:4549..4690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 4550..4690 +
1691481100.0474863-CDS-H-paniculata_contig321:4549..46901691481100.0474863-CDS-H-paniculata_contig321:4549..4690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 4550..4690 +
1622929989.2291427-CDS-H-paniculata_contig321:5515..56851622929989.2291427-CDS-H-paniculata_contig321:5515..5685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 5516..5685 +
1691481100.063475-CDS-H-paniculata_contig321:5515..56851691481100.063475-CDS-H-paniculata_contig321:5515..5685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 5516..5685 +
1622929989.2458718-CDS-H-paniculata_contig321:7103..73681622929989.2458718-CDS-H-paniculata_contig321:7103..7368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 7104..7368 +
1691481100.0737708-CDS-H-paniculata_contig321:7103..73681691481100.0737708-CDS-H-paniculata_contig321:7103..7368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig321 7104..7368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig321.8639.1prot_H-paniculata_contig321.8639.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig321 3209..7368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig321.8639.1

>prot_H-paniculata_contig321.8639.1 ID=prot_H-paniculata_contig321.8639.1|Name=mRNA_H-paniculata_contig321.8639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
MNDTGTVGAVAPGELLGPIVGLTFSSGGDILFASCGSSVRAYSVGSGKLL
VSRRVFPSGVAVSGLDIGDEGLTGAVFGDKSILIVNGVVLPSLFNFSWTG
ATGKIARDGPCQSWFQTVARIPPLDDRVWDARLIQCGDIYPAIKGEKGKG
KGESRKMRLVAAALAHNCVEVWQWNNVEGPVRMSRSRAGDPCLLYHARLW
GRTLGELRVAAGTVFNQILVWSPADTLALFADQRQGKRTDLDVRGQWQRN
GGADQIRSGRNLLRLQAHEGVLFRISWREDGKRIASASDDRTVRVWNVVD
EHDGSLSLPSNVTHSCTCDFISKGCDGTCDITTDSNQSVGIGDPARVSTS
GWEKVERKSRLL
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mRNA from alignment at H-paniculata_contig321:2287..7368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig321.8639.1 ID=mRNA_H-paniculata_contig321.8639.1|Name=mRNA_H-paniculata_contig321.8639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5082bp|location=Sequence derived from alignment at H-paniculata_contig321:2287..7368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGTGCAGCGCAGAGGGCACAACTATCCACCGGTGGCACTTCTGTGCT GTCGATTGCTATTGGTGAGTCCCCCTCGCTGGTGATTGTGGTGAGCAAAA GTTGTTCGTAACCGTTGATCTGTCGCGAACTGAGGGTGTAACGGAAAGAG AAATGGTTGCTTGTACAGTATCCAACTTGTCTACTGTACTCACACACTTT TGTCCATATTTCAACATGATACGTACTGTCTGTCCGAGCTATCATGCTCA TAAATTGTACAATAGTTAATTAACCCTTTCGACACTGGTTCCCGTCGTAT CCCTATCTAGACTACCTCGAACAGGGGGCAATAGCCTCTATGGCATGATG ATTGCGGTGAAAGTGAGCTGCCGTTGTCAGGCAGCCTCCAATACAGAGAG TAGAGTCCATAAAGCACAGATAGGTAGATAAGTGGCATGATCCTGCCCAC AACGACTACAGTGCTTCACAGCAGCTATCAGTCATCAGAGGAATTTCCTG TTCCGAAAACAGCCTCCAGTGTTGAAACGTCAAAGGTTGAAAGAACAAAA TAAAACCGTTAGGCTAAAATGTACAATTGGCAATTGGCATCTTATTTTCC GTTCTCTTCTCACGAATCGTTAACATCAAGGTTTTCGTAGCATGACCATG TTGGCAACGCTTTCTGCACAGAGAGTCAACGCATTGACTGCGAATGGAGA AACGTGCCTTGATGGTAGCTCCCTTCCCCACAGGCTTATATTTCGCTATT ATCTATTATCCGATTCCCCGGTTGTACAGTCAGGACATTTTCAAATCCAA AGCTCGTCAAACAATCCCTCGCTATGGGCGTCACCGCTGCACGTGCAACG CCTCAGAATACAGTAGATCTCGCCAGAACTGTGCCGTGACCGGGACAATA GAACAGCATCTGAGTCGCTACCATGAATGATACTGGAACCGTGGGCGCTG TGGCACCCGGCGAGCTCCTCGGTCCGATTGTTGGGCTAACGTTCTCTTCA GGCGGTGATATTCTGTTCGCCTCCTGTGGCTCATCTGTCAGGGCATACTC TGTTGGCTCCGGCAAGTTGCTTGTGAGTCGAAGGGTGTTTCCGTCAGGAG TAGCGGTGTCCGGATTGGATATCGGCGACGAGGGATTAAGTGAGTTTTGC ATTTTTCGACGTATGCATCGTCGCCGGGTGACGAAACGTGTTGCCCGTTT TGTTTTTTGTTCGGGCAAACCATATGAGAGTCCGTGTAAGGAACGAGTGA GATATTCAAGCTATTTTGGTGTTCTGCGTGAAGATACTTTACATCTGGCT TGTCCTGCGCGACCCCAGAAGAGGTTATGATGCTAATCTCGGAGCGTTAC TGAAGTGGCACCTTTCGTAGGATGTGGCAGTACGGTCAAGTGAATGCCCT CCTCCGTTCCTTGGAGGTAGCCTGCCCATTGGTCACATAACGTTGACAGC AATTCAAACTTCGGGACGTGGTTTCACAACAAGGCAAAACATGAACATCA AAAGCGATCAAGGTTCAAACGCGGCATGGTCACGCTGGTCCTTTGTTTTA GTCGGCGTGGCTTCCTCGATGCTCACAAAGTTTTTCAATTTGATGGATTT GCCGGCTAGGGTGTGCCAATTATCTTCCCGATCACCGCGCTCCTCCCCCA CCGATCTCACGTCCTCGCTGTTGGCAGCCGGCGCCGTTTTTGGAGACAAG AGCATCTTGATTGTCAATGGAGTAGTTCTGCCGAGCTTGTTCAACTTTTC TTGGACTGGCGCCACAGGAAAAATTGCGCGCGATGGCCCCTGCCAATCAT GGTTTCAAACCGTTGCCCGTATCCCGCCGCTAGATGATCGCGTCTGGGAT GCCCGACTGATCCAATGCGGAGACATATATCCTGCTATTAAGGGAGAGAA GGGCAAGGGAAAGGGTGAAAGCAGGAAAATGCGTCTTGTTGCTGCTGCGT TAGCGCACAACTGCGTGGAGGTATGTACGACAACGAAGGATTGATCAACA TCCACGAGCAAACGCCTCTAGGTCACGGGATCAGCCAAAATTATTTATGG GCACAAAGAGCATTTCCCCCAGCTCTATAAACACCGGGTGCGATATCGCC ACAAAATAGTCACGATTTGGGGGGGGCTTCAAGGTCGGTTCTTTTTTTAG AGCTGAATGATAAATGAGGAACAGCCCACACTTCAATGGAGACCGTACTG TATCACGAGGTTGCTTTTTTGTTTGGCCATTGCACTGGATTTGTTTGCGC CCGTACGTGAAAGGTTTGGCAATGGAACAATGTTGAAGGCCCCGTGCGAA TGTCTCGCTCACGCGCCGGCGATCCGTGTTTATTGTACCATGCGCGCCTC TGGGGACGGACGCTGGGAGAGCTCAGAGTCGCTGCGGGCACCGTGTTTAA TCAGGCAAGCAAAACCCCTAGACGCCTCCGACACGGCGAAGGTGGAAACT GAATGGGTACACGCTATTTTCGACCTTTCGACGATACGCCCGATAAGGAA CTGATTTGATAGTCTTTGAGTTCCTAGAAAAATACCTATACTTGAGATAC AAGGCACCGCAATCCTGATCTGGGTCACCAGGCGGGGAACAGTCTATTTG TCCTCCGCAAACTCGAACAATATCTTTTTACCTCAACCTCATACATGTTT TTCTTCTATATTCTTTGTTAATGACAGTGGTGATTTAGTAGAGCTGTTGC TTTAACCATCACCATCCCGTCATGTAAACGCAGAACCCGAATCCCTATTT GCTGATCATGGTACAAAACCTAATACATGCCGGGCTGCGTGCTAGCATTC TCCACGTTCACGTTTTGCCCCTTCTTTTGGTTCACGAGTGTCTCCTCTGT TGTCTGTAGAGTCCTGTTATCGTCGGCTTTGCCGTCGTCCCCCTACATTT GGTCTGATTTCGTTGATTGGAAAGTGAAGGTACTCGCGTGTGGCGAGCTG ACGTGCGAGGGTCATGGGTTGCACATCGATGGATAGAGTGGTGACGGAGT TGCTGAACGGGTGTAGCTGTGACCCAATTACCAGAGTACGCGCTTTTTGC TAATCGAAACCCTACCGTGACGCCATCTTGGAACAACCCGCCACCACCGT TGTTGGCACACCGTGTTTCTAGCTAGTAATGAGCCCGATGTGCTTAGGAT ATGTGTTGCACACCCTAGTAATGCGTACATGGCCTAAGCATATTGGCAGA AAACTCATGTTGAAAGGTTCGTTCTGCAGATTCTCGTATGGAGCCCGGCA GATACTCTAGCATTGTTCGCGGATCAACGACAAGGCAAACGCACGGATCT TGATGTTCGTGGGCAGTGGCAACGGAACGGCGGAGCTGACCAAATCCGCT CTGGGAGAAATTTGCTGCGATTACAGGCCCACGAGGGGGTACTATTCAGG TGAGTACAATGTGTGGGGTTAGACTTTACCATTCGGCTTTACATTAACAG CAAACGGCAACCACACATATGCCCACGCGCACACGCATCCGCGCAGGCAA GATATAGATTTCGCTGCACACGAGCGCGAAGTGGGTTCAAATCTCACGAG TGTTCATTGAACGTCTTCAATTTTCTACTGTTGCCTCCGTTTGTTCGTGT CATTTTGTCACCTTCGCTTCTTCACGCCTTGCGAATGGCGGCTCCCTGTG ATCACTTTTGGGGCGAAGGGTATTAATCCTCAAATACAACGGAAGCTATG GAGTAAGTGCGGCCGAAACTCGAGAAGGATTCCAATTCAGCTCGCCCGAA TAAGTTTTACGGCGGCAGTTCATTTGTTTCTAGAGGTGCTTTTTGATGTG TAAATCCAAATCCCACTCGCTTAAGAGAAAGAAGTATTCGAGGTGTTCTT TGCGGTACGGGTGGAGTCATTCGTCGATTTTGCCGACACTCTCTTCTGAC CCGCCGTGGCCATTCGTTTTGGCCCGAATTAGGTTGACGGTGATTGAATT GCGGACCCAGTCGTTAAGGACAGTGGTTGTGTACGCCCAACCTCCTTCTG TTGTGCTAACCGAAGTTCGTATAGATAAAAGGCCACTTTTTATTTCAGAA ATATTCGTCTGTTTTAGTCGTTGTCACACGGAGGAGGGCCATAAGAAGTG ATGGGGAATGCGACAATGACCGCATTTTATCCACATTTTCCCAAGGAATC GAACGCCACAAACCGTCTCGTCATCGAAGGACTTGTTGCGACGTTATCGC TGTAGAAGTGTCATTCAGCCGTTATCGGTCGATTTTGGTATGTTTTAATC AGTTGCCCCAGAATAAACAGTTGTGTTGAGATGACATTTTCTCAACCATT TCGATCTGACAAAATGTTAAAAAAATGTCAATGCTTAAGTCAGGGAGTGT CAGCATGTAAACAATATAATTGGGCTTTAATGGATATTAAATTTGAGGAA GATATTCTAAAGTATCAATAACAAGCCAGACTCATGGAACATAGCACTTT TGAAAGAAAATACCTCAAATATGGCATTTTTCCGGCTATGGTTGTTTTCA CGGCGTGTGTTTGGGCGTCAAAAGGCAGCTGTTTGACCCACAATTTGGGG GGTTGCACCTCAAAACCATGCAGTTTTCAGTCCACAGAAGAAACGGAGAT AATCATAACCTTCTCTATCAAGAGTTACTCTACTTGTGGAACAGACGAAG TATGATACATACGACCAAGGGTGTTCCCACGCGTCGGCGGTCACGTATCG TGCATACTCCAAAGGGCAGTTCAAGCCATAGCTTTTGATCCGATCATGAG ATTCAGCTCTCCATTTCGCGATCATGTTCCGTGACTTTTTCGTATTTCCC CCCTGATGCCACGGTAGGATATCCTGGCGCGAGGACGGAAAACGCATAGC TTCGGCCTCTGATGATCGAACTGTACGGGTTTGGAACGTAGTTGACGAGC ATGACGGGAGCCTTTCTCTACCTTCTAATGTTACACACAGTTGTACCTGT GACTTCATTTCCAAGGGTTGTGACGGGACCTGCGATATCACGACCGATAG CAACCAGAGTGTCGGAATCGGGGATCCTGCTCGTGTGTCCACGAGCGGGT GGGAGAAGGTCGAGCGCAAATCCAGGCTTCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig321:2287..7368+

>mRNA_H-paniculata_contig321.8639.1 ID=mRNA_H-paniculata_contig321.8639.1|Name=mRNA_H-paniculata_contig321.8639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig321:2287..7368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGATACTGGAACCGTGGGCGCTGTGGCACCCGGCGAGCTCCTCGG
TCCGATTGTTGGGCTAACGTTCTCTTCAGGCGGTGATATTCTGTTCGCCT
CCTGTGGCTCATCTGTCAGGGCATACTCTGTTGGCTCCGGCAAGTTGCTT
GTGAGTCGAAGGGTGTTTCCGTCAGGAGTAGCGGTGTCCGGATTGGATAT
CGGCGACGAGGGATTAAATGAATGATACTGGAACCGTGGGCGCTGTGGCA
CCCGGCGAGCTCCTCGGTCCGATTGTTGGGCTAACGTTCTCTTCAGGCGG
TGATATTCTGTTCGCCTCCTGTGGCTCATCTGTCAGGGCATACTCTGTTG
GCTCCGGCAAGTTGCTTGTGAGTCGAAGGGTGTTTCCGTCAGGAGTAGCG
GTGTCCGGATTGGATATCGGCGACGAGGGATTAACCGGCGCCGTTTTTGG
AGACAAGAGCATCTTGATTGTCAATGGAGTAGTTCTGCCGAGCTTGTTCA
ACTTTTCTTGGACTGGCGCCACAGGAAAAATTGCGCGCGATGGCCCCTGC
CAATCATGGTTTCAAACCGTTGCCCGTATCCCGCCGCTAGATGATCGCGT
CTGGGATGCCCGACTGATCCAATGCGGAGACATATATCCTGCTATTAAGG
GAGAGAAGGGCAAGGGAAAGGGTGAAAGCAGGAAAATGCGTCTTGTTGCT
GCTGCGTTAGCGCACAACTGCGTGGAGCCGGCGCCGTTTTTGGAGACAAG
AGCATCTTGATTGTCAATGGAGTAGTTCTGCCGAGCTTGTTCAACTTTTC
TTGGACTGGCGCCACAGGAAAAATTGCGCGCGATGGCCCCTGCCAATCAT
GGTTTCAAACCGTTGCCCGTATCCCGCCGCTAGATGATCGCGTCTGGGAT
GCCCGACTGATCCAATGCGGAGACATATATCCTGCTATTAAGGGAGAGAA
GGGCAAGGGAAAGGGTGAAAGCAGGAAAATGCGTCTTGTTGCTGCTGCGT
TAGCGCACAACTGCGTGGAGGTTTGGCAATGGAACAATGTTGAAGGCCCC
GTGCGAATGTCTCGCTCACGCGCCGGCGATCCGTGTTTATTGTACCATGC
GCGCCTCTGGGGACGGACGCTGGGAGAGCTCAGAGTCGCTGCGGGCACCG
TGTTTAATCAGGTTTGGCAATGGAACAATGTTGAAGGCCCCGTGCGAATG
TCTCGCTCACGCGCCGGCGATCCGTGTTTATTGTACCATGCGCGCCTCTG
GGGACGGACGCTGGGAGAGCTCAGAGTCGCTGCGGGCACCGTGTTTAATC
AGATTCTCGTATGGAGCCCGGCAGATACTCTAGCATTGTTCGCGGATCAA
CGACAAGGCAAACGCACGGATCTTGATGTTCGTGGGCAGTGGCAACGGAA
CGGCGGAGCTGACCAAATCCGCTCTGGGAGAAATTTGCTGCGATTACAGG
CCCACGAGGGGGTACTATTCAGATTCTCGTATGGAGCCCGGCAGATACTC
TAGCATTGTTCGCGGATCAACGACAAGGCAAACGCACGGATCTTGATGTT
CGTGGGCAGTGGCAACGGAACGGCGGAGCTGACCAAATCCGCTCTGGGAG
AAATTTGCTGCGATTACAGGCCCACGAGGGGGTACTATTCAGGATATCCT
GGCGCGAGGACGGAAAACGCATAGCTTCGGCCTCTGATGATCGAACTGTA
CGGGTTTGGAACGTAGTTGACGAGCATGACGGGAGCCTTTCTCTACCTTC
TAATGTTACACACAGTTGTACCTGTGACTTCATTTCCAAGGGTTGTGACG
GGACCTGCGATATCACGACCGATAGCAACCAGAGTGTCGGAATCGGGGAT
CCTGCTCGTGTGTCCACGAGCGGGTGGGAGAAGGTCGAGCGCAAATCCAG
GCTTCTAGATATCCTGGCGCGAGGACGGAAAACGCATAGCTTCGGCCTCT
GATGATCGAACTGTACGGGTTTGGAACGTAGTTGACGAGCATGACGGGAG
CCTTTCTCTACCTTCTAATGTTACACACAGTTGTACCTGTGACTTCATTT
CCAAGGGTTGTGACGGGACCTGCGATATCACGACCGATAGCAACCAGAGT
GTCGGAATCGGGGATCCTGCTCGTGTGTCCACGAGCGGGTGGGAGAAGGT
CGAGCGCAAATCCAGGCTTCTA
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