mRNA_H-paniculata_contig32073.8636.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.840e-38 Identity = 122/386 (31.61%), Postives = 187/386 (48.45%), Query Frame = 1
Query: 7 EIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVADVPELGRNLISTRRATYTSSKSFIDSANKASLGLGEEESL---------IFNVSASSGLYEVEAIRNAAGTAKAPTARRSSNHSVMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIM---PKGLKIGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQT----EGGSEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLG 1110
+A G P+ G+G + + +S GG + + +L RVA VP L NL+S ++ + ++ L G ES+ + N + + AI A G AKA +A N D H H+ + + R T + G L+G R C CSTAK +P KT RA +R+++DL G RV SL G Y +I+ D Y+ + V F+K +SDA A + Y+AE P + + +R+DNGG+F +GE ++ I F P +P+YNGVAER LGL+++ ++ +Q T AEA+ +AC+ N + T S +PYE W+G+ P F + K+ + HK +KC LG
Sbjct: 423 RVAAGETFPIVGYGDVTVTLSSRGGTTDL-LLKRVAHVPRLDYNLVSLTSLFDDGFQTKTLNKHELELERGGGESVYSPRCGNLYVHNGCRTHTEHAYTAI--APGDAKASSAPVEIN----DFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 798
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 138 bits (348), Expect = 4.780e-34 Identity = 86/272 (31.62%), Postives = 144/272 (52.94%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIMPKGLK--IGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
+ + H + H+ + + R T + G L+G AC CS +KA R + ++T +R+ R++ DLGG + S+GG Y +I+ D ++ + F++ +SDA +A ++++A + G+ + +R+DNGG F G+ +E I F P +PQYNGVAER LGL+ E ++ +Q + G ++KL AEAM++AC+ N + + +++PYE WYG P F Y R + K+ GE C +G S +H
Sbjct: 34 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FSKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 302
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.120e-33 Identity = 94/275 (34.18%), Postives = 139/275 (50.55%), Query Frame = 1
Query: 316 ARRSSNH-SVMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIM---PKGLKIGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQT----EGGSEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLG 1110
ARR S + D H H+ + + R T + G L+G R C CSTAK +P KT RA +R +V+L G R SLGG Y +I+ D Y+ + V F+K +SDA A + Y+ E P + + +R+DNGG+F +GE ++ I F P +P+YNGVAER LGL+++ I+ +Q T L AEA+ ++C+ N + T S +PYE W+G+ P F + K+ + HK +KC LG
Sbjct: 299 ARRGSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPTAQKCFYLG 570
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.770e-33 Identity = 91/273 (33.33%), Postives = 146/273 (53.48%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEY---IMPKGLKIGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
+ + H + H+ + + R T + G L+G AC CS +KA R + ++T +R+ R++VDLGG + S+GG Y +I+ D ++ + F+K SDA A ++++A I+P ++I +R+DNGG+F GE +E I F P +PQYNGVAER LGL+ E ++ +Q + G ++KL AEAM++AC+ N + + +++PYE WYG P F Y R + K+ GE C +G S +H
Sbjct: 254 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 522
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 134 bits (336), Expect = 7.530e-32 Identity = 113/362 (31.22%), Postives = 167/362 (46.13%), Query Frame = 1
Query: 16 NGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVADVPELGRNLISTRRA-----TYTSSKSFIDSANKAS--LGLGEEESLIFNVSASSGLYEVE-------AIRNAAGTAKAPTARRSSNHSVMDMHRLLTHASDKITRDTTESAGVVLMGG-WRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEY---IMPKGLKIGAIRTDNGGDFDGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISLMQDQTE-----GGSEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTF 1032
N VP G+G + + GG+ V +LN A VPE NL+S TY+ K + +A + L+ Y++E A G AKA T ++ H H +++ + T + GV L GG C CS +K + K TD RA RL+++LGG M+ S+GG+ Y +II D + + V F+K +SDA AA + Y+A+Y +P ++ RTD GG+F G+ GI F PP+TP+YNGVAER LGLL + ++ E S L AEA++ AC N + T G+ +P E ++G P+ F
Sbjct: 24 NNAPVPPLGYGDVTVVFLTEGGRVPVLILN-AAHVPESPHNLLSLSALAEEGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEG-----YQIEPKVDIACAATIVPGDAKAATPTDLNSD-----HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVP--CEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 137 bits (346), Expect = 7.950e-32 Identity = 88/272 (32.35%), Postives = 145/272 (53.31%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIMPKGLK--IGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
+ + H + H+ + + R T + G L+G AC CS +KA R + +T +R+ R++VDLGG + S+GG Y +I+ D ++ + F++ +SDA +A ++++A + G+ + +R+DNGG+F GE +E I F P +PQYNGVAER LGL+ E ++ +Q + G ++KL AEAM++AC+ N + + +++PYE WYG P F Y R + K+ GE C +G S +H
Sbjct: 187 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 455
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.310e-31 Identity = 88/272 (32.35%), Postives = 144/272 (52.94%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIMPKGLK--IGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
+ + H + H+ + + R T + G L+G AC CS +KA R + ++T +R+ R++VDLGG S+GG Y +I+ D ++ + F++ +SDA +A ++++A + G+ + +R+DNGG+F GE +E I F P +PQYNGVAER LGL+ E ++ +Q + G ++KL AEAM++AC+ N + + ++ PYE WYG P F Y R + K+ GE C +G S +H
Sbjct: 132 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPTKLLPKGESCFYVGPSRDH 400
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 135 bits (340), Expect = 4.890e-31 Identity = 91/272 (33.46%), Postives = 141/272 (51.84%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIMPKGLK--IGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
V + H + H+ + R T + G L+G C CS AKA + + ++T R+ R++VDLGG V S+GG Y +I+ D ++ + F+K +SDA A +S++A + G+ + +R+DNGG+F GE +E I F P +PQYNGVAER LGL+ E ++ +Q + G ++KL AEAM++AC+ N + + + +PYE WYG P F Y R + K+ GE C +G S +H
Sbjct: 666 VNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 934
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 135 bits (340), Expect = 4.980e-31 Identity = 91/272 (33.46%), Postives = 141/272 (51.84%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIMPKGLK--IGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
V + H + H+ + R T + G L+G C CS AKA + + ++T R+ R++VDLGG V S+GG Y +I+ D ++ + F+K +SDA A +S++A + G+ + +R+DNGG+F GE +E I F P +PQYNGVAER LGL+ E ++ +Q + G ++KL AEAM++AC+ N + + + +PYE WYG P F Y R + K+ GE C +G S +H
Sbjct: 373 VNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYP-FLKPAYCRWQ-RPSKLLPKGESCFYVGPSRDH 641
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.650e-30 Identity = 90/272 (33.09%), Postives = 141/272 (51.84%), Query Frame = 1
Query: 340 VMDMHRLLTHASDKITRDTTESAGVVLMGGWRACKRCSTAKAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSSYLVIIVDGYSWFQAVKFIKKRSDATAALQSYIAEYIMPKGLK--IGAIRTDNGGDF-DGELHLKLDEHGISHGFIPPDTPQYNGVAERRLGLLREKTISL-MQDQTEGG------SEKLLAEAMNYACDITNMSYTLSIEGNVTPYEKWYGNTAPMEHLQTFGTVGYMRKIIKEHKMASCGEKCIMLGISHNH 1125
V D H + HA + + R T + G+ L G AC CS KA R A+ T + R++V+LGG V S+GG Y +I+ D ++ + F++ +SDA +A +S++A + G+ I +R+DNGG+F GE +E I F P +P++NGVAER LGL+ E ++ +Q + G +++L AEAM++AC+ N + + + +PYE WYG P F Y K + K+ GE C +G S +H
Sbjct: 393 VNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYP-FLKPAYC-KWQRPSKLLPKGESCFYVGPSRDH 661 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32073.8636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32073.8636.1 >prot_H-paniculata_contig32073.8636.1 ID=prot_H-paniculata_contig32073.8636.1|Name=mRNA_H-paniculata_contig32073.8636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp MCEIANGTFVPVEGWGRLVLRVSQPGGKSRVAMLNRVADVPELGRNLISTback to top mRNA from alignment at H-paniculata_contig32073:1295..2425+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32073.8636.1 ID=mRNA_H-paniculata_contig32073.8636.1|Name=mRNA_H-paniculata_contig32073.8636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1131bp|location=Sequence derived from alignment at H-paniculata_contig32073:1295..2425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32073:1295..2425+ >mRNA_H-paniculata_contig32073.8636.1 ID=mRNA_H-paniculata_contig32073.8636.1|Name=mRNA_H-paniculata_contig32073.8636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig32073:1295..2425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |