|
|
Homology
BLAST of mRNA_H-paniculata_contig3206.8632.1 vs. uniprot
Match: D7FKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS0_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.100e-57 Identity = 119/259 (45.95%), Postives = 157/259 (60.62%), Query Frame = 2
Query: 266 KVVLAPGSQYDVDNGRSACSCICLEAAISILGQLRGKREWTGSPDDVQGEDGERLYVVAVYIARSIAPPRRWIALFHFLEDVDDARTHRRVFEAVA-TSYLQIPGAAPSWLRKKCGGYRDALGLASSRGCHQSLLSSETSFSRIMEDIRNERQRKSCPIAVTITKPPETVVAFLPPENGSDTSSAGTEAPSAPQQWLLFDSHPRPQLGLTGASVQSFEAESALVTALNLIFPVVDVESNSLLASMYNMLDCTPLFLKQR 1039
+VV A SQYDV NGRS+C+CICLEA++++L +L W GSPDDV + T ++EAVA T L + + + + Y DAL A+ + HQ LL S+TS +R++ +IR ER+ +S P+AV ITKPPETVV FLP E+ ++ +A T APS +QWLLFDSHPRPQ GL GASV+ F AE ALV ALN IFP VD+ ++S+++SMYNM DC PL LK+R
Sbjct: 14 QVVSASISQYDVQNGRSSCTCICLEASLTVLERLGDGTAWAGSPDDV----------------------------------ANCVNTGVAMYEAVAATGTLAVEHTSVAEILATVARYHDALQPATDKVTHQGLLGSDTSIARVLGEIRGERRDQSRPVAVVITKPPETVVCFLPAESQAEGGAATTGAPST-RQWLLFDSHPRPQHGLVGASVRCFAAEEALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLKKR 237
BLAST of mRNA_H-paniculata_contig3206.8632.1 vs. uniprot
Match: A0A448Z9M5_9STRA (UBA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9M5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.420e-11 Identity = 92/345 (26.67%), Postives = 144/345 (41.74%), Query Frame = 2
Query: 137 QLLAMGFPEDAAKSCLQAHGGNVEEAINTLLS-----------------TPWPE----QEQASSKVVLAPGSQYDVD-NGRSACSCICLEAAISILGQLRGKREWTGSPDDVQGEDGERLYVVAVYIARSIAPPRRWIALFHFLEDVDDAR--THRRVFEAVATSYL--QIPGAAPSWLRKKCGGYRDALGLASSRGCHQSLLSSETS--------FSRIMEDIRNERQRK---------------SCPIAVTITKPPETVVAFLPPENGSDTSSAGTEAPSAPQQWLLFDSHPRPQLGLTG--ASVQSFEAESALVTALNLIFPVVDVESN--SLLASMYNMLD 1012
QL+ MGFPE+ A++ LQ GN+E A+N LLS T P E ++ V+ SQY +GRSAC+CI L AA + K + E+ + ++ R+I ++ + L DA ++ + A L GAAP K G R + + G Q LS + + ++ D+R +R+R+ S I + +TK PETV+ LP ++ + G + WL+ DSHPRP L A + + +L+ +L IFP+ D+ + ++A MYNM D
Sbjct: 10 QLVCMGFPEEQARNALQTTAGNLEMAVNLLLSGXAIGSAGNENGALLSPTAIPAVPVATESPAAVVIKGSSSQYSHGPDGRSACTCIALTAADILASSCTAKSR----------DSDEQTSITTSFLNRAI---EEGVSRYRILRXRCDAGGGSNSSIEHLSAEEVLLKDEQGAAPEG--KHLFGVR-VVAIGGGLGVRQGALSRDPGHPLGLPSVLNGLVGDVREQRKREWNQTGNTNGSANGRPSPMIYILMTKSPETVLLCLPCDDCKKVNEKG-------RYWLV-DSHPRPHLFQRAEHAYAKPHDTMDSLLQSLRCIFPLTDLGPDIPPMMADMYNMFD 330
BLAST of mRNA_H-paniculata_contig3206.8632.1 vs. uniprot
Match: A0A7S2UJ74_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ74_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 8.580e-11 Identity = 87/337 (25.82%), Postives = 134/337 (39.76%), Query Frame = 2
Query: 125 SALEQLLAMGFPEDAAKSCLQAHGGNVEEAINTLL-----STPWPEQEQAS--------------------SKVVLAP---------GSQYDVDNGRSACSCICLEAAISILGQLRGKREWTGSPDDVQGEDGERLYVVAVYIARSIAPPRRWIALFHFLEDVDDARTHRRVFEAVATSYLQIPGAAPSWLRKKCGGYRDALGLASSRGCHQSLLSSETSFSRIMEDIRNERQR--KSCPIAVTITKPPETVVAFLPPENGSDTSSAGTEAPSAPQQWLLFDSHPRPQLGLTGASVQSFEAESALVTALNLIFPVVDVESN--SLLASMYNMLDCTP 1021
+++ L++MGFP A L+A G+++ A+N +L S+ P +S S +VL SQY + NGRSAC+CI L A + L ++ PD E + ++ R +A R + ++H L + + + S ++ A P G A G +G + F R + +R++ + +S +AV ITK PETVV L SD LL DSHPRP+L TG+ +L L +FP V + S+ +A MYN D P
Sbjct: 7 ASIAMLMSMGFPASQASEALRATDGDMDRAVNYILTGSVSSSASPPSNGSSXXXXXXXXXXXXXXXXXNKDSSMVLGTLEPIMINCDASQYTIQNGRSACTCIALAGANAFLSEM-------SKPDPDPFE-----IITPAFLQRVLA---RGVWVYHQLMQKEASTGNSEKSNVEHKSAEEVLLAVPD----TTFGSMTAQGRTVVQGIIDDDMFHPMGFRRKLASLRDDMAKTVRSSWMAVVITKTPETVVVCL-----SDNDEC-----------LLLDSHPRPELQATGSYAMMHADLDSLCLTLFKLFPPVHMTSDISETMAMMYNSFDLYP 308
BLAST of mRNA_H-paniculata_contig3206.8632.1 vs. uniprot
Match: A0A1E7FNL0_9STRA (UBA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNL0_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 3.510e-5 Identity = 83/345 (24.06%), Postives = 126/345 (36.52%), Query Frame = 2
Query: 131 LEQLLAMGFPEDAAKSCLQAHGGNVEEAINTLLSTPWPE--------------------------------QEQASSKVVLAPGSQYDVDN-GRSACSCICLEAAISILGQLRGKREWTGSPDDVQGEDGERLYVVAVYIARSIAPPRRWIALFHFLEDVDDARTHRRVFEAVATSYLQIPGAAPSWLRKKCGGY---RDALGLASSRGCHQSLLSSETSFSRIMEDIRNERQRKSCP--IAVTITKPPETVVAFLPPENGSDTSSAGTEAPSAPQQWLLFDSHPRPQL--GLTGASVQSFEAESALVTALNLIFPVVDVESN--SLLASMYNMLDCTPLFLKQR 1039
++QL+ MGFP ++ LQ GN+E AIN LLS VV SQY + GRSAC+CI L A IL + A ++ +IA + +RR+ + ++S +I + + K +D L+ Q + + ++ DIR S I V +TK PETV+ +P D + L DSHPRPQL G+ +S +L+ +L +FP D+ + ++A MYNM D PL ++R
Sbjct: 9 VDQLVCMGFPNIEVRNALQITAGNLENAINHLLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNNSGVRAVVEGTTSQYTYSSDGRSACTCIALTVAGMILNXXXXXXXXXXXXXXXXXXXD---IITADFLDSAIA---------------EGVSRYRRLVTSSSSSGSEIEHLSAEEVLHKDNEQARTKDNRALSIDINHAQGM---KACLEGLVRDIRPSGNSNSSDRMICVLLTKTPETVLLCMP--TTEDXXXXXXXXXXXXXXYWLIDSHPRPQLLPGVETCYAKSHLTMDSLLQSLRDVFPFTDLGPDVPPMMADMYNMYDLYPLEGRRR 330
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 204.9 |
| Seed ortholog evalue | 5.4e-50 |
| Seed eggNOG ortholog | 2880.D7FKS0 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E3UP@1,2SAUQ@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-21_001890.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 1838 |
| Cds size | 927 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3206.8632.1 >prot_H-paniculata_contig3206.8632.1 ID=prot_H-paniculata_contig3206.8632.1|Name=mRNA_H-paniculata_contig3206.8632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MSALEQLLAMGFPEDAAKSCLQAHGGNVEEAINTLLSTPWPEQEQASSKV
VLAPGSQYDVDNGRSACSCICLEAAISILGQLRGKREWTGSPDDVQGEDG
ERLYVVAVYIARSIAPPRRWIALFHFLEDVDDARTHRRVFEAVATSYLQI
PGAAPSWLRKKCGGYRDALGLASSRGCHQSLLSSETSFSRIMEDIRNERQ
RKSCPIAVTITKPPETVVAFLPPENGSDTSSAGTEAPSAPQQWLLFDSHP
RPQLGLTGASVQSFEAESALVTALNLIFPVVDVESNSLLASMYNMLDCTP
LFLKQRAT* back to topmRNA from alignment at H-paniculata_contig3206:1995..13227- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3206.8632.1 ID=mRNA_H-paniculata_contig3206.8632.1|Name=mRNA_H-paniculata_contig3206.8632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11233bp|location=Sequence derived from alignment at H-paniculata_contig3206:1995..13227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTCTGCAATCTACGTTGCTTCGTGCCACCGCCAGCCTCGCTCTCGCCA
GATCCAGAGGGTAAGTGACCAGTGCCGATATCGCTCCAGCGATTGACCTT
TTTTAAAATCGAGTTAGACACAGTTCGTGAACATTTGCGCGTTCGAGAAT
ATGACAGGCACACCCACAAAACAACGATGTGGTGTTTCCGACAACGCAAA
CCGCAGACGACAATATGAATGCTTGCGTTGAGTGTCGAGTGGGAGTGCAA
GCAGCAAAAGCCTCTTTGCCCAGCTTCACACACCTCGGAAAATATCCTCT
TCACAAATCTTCACCCTCCCGGACAAATCTTCACAAAAAACTGAAAGTAT
TTGCCTGAGTTTCAGAATGAGGGGAAATAAGGAATAGAGTACCGATCCCT
GTCCATTCTATTTACGAGTATTATGAGCAGTCGTGAATGGTCCGGGGCAC
ATAGAAAACACAAGCTCATTCTGAAACTCAGGCGAACATTTTCAGTTTTT
CTGTCAAAACTATTGGCAAGTATTCGTATTTATCCGGGGGGTGCAAACAT
TACCACGTAAAGTGGCCAACTATAAGAGCATCTAGGTAGCGCCACTGCCC
CTCCAACCCATGAGTAATAGACATCATGCACCACACGAAAACATTACAAA
CACACCACTGATCGGACGTATTGCAAGAATCCTTAGGAACATAAGTCACT
TCTCACCCTGACATTAGCGACTCCAAGTTGGAGAGCCGTTGCTCTGTGCT
CGGGTCAACTCGTCTTCTCCGGAGAAGCGCCCATCGTTTGAGACTATCAA
ACATCATAAACTGAGTCCCCGCGTAAGGGAACACGCGGATCATCGTGGCA
CTGAAAGAACCAAAACGGGGGGCGTTATCAGCGGCGGGGGTGGGGTGGAG
CTGAGGCAACGATTGAGAATGGCTAACGGGGGCCATGAGGCGACTTAACA
ATGGGAAAGCTCCGGTCATGATTCCCTAGGGTATGTCATATAGTAACCCC
GAGACCACTCTCGTATCGTAGATCATCCAAAGATTTGCATTTTCTCGGCA
GGGACATGGTGCACACAATCAACACAAAACAGTCGACCCACCTGAACCAT
GCCAACGGAGAAAAATGTTATTGTGTCTGTAGTGGTATCGATATTCACTG
GCCAAAAATGAGCAAGGTCGGACCGTGTCGCAGGATCTAGGTCATGACAA
CAGTGAACGGCAACGACGGCAAGTATCATCCTTCCCGACTGCAGCACCCG
ATTTAATAAAAAAACTGCCCCCTACTGCAAATCACGTCTGATATAAAACG
GAAACGAACTCACAAGCAGAAGAAAATACACCAGGGCAGCCCATCTCACA
AACGGAACAGTAGTTCGAAAAACTGCGAAACAACCAGAAACAAGCGCGGT
CACCTATTGCCTTTCCATAGTCCTTGGCGCCCTTCCAATCTGATAATATC
TCGCATTATTGTCTCTGCCTGGGGGAAATGTCCGCGTACGAAGAAGCGCG
CGGGGGGGGGGGAACGATTGTTTAAGGACAGGTACAGGGGCTGCCTTTTA
CGTGATTTTGTTGCCCACATCGAGCCGCTTAGTGGCATGGAAAGGCTAAC
GTGTGCACCTGATGTTGAGTCGCGAAACTTTCTACTAATAACAGTTGCAA
GTGTACAATACAAGGTGCGCAAATATTATATCGTGCACCAGAGTGTTGAG
CGTTGCTCTTGTCTGACTCTTGACAAAAAGGCAATAAACGATACATGGTA
CTATGTGCTCCCAAGTCATGTGTGCGTTCTACAATTACCAATCCCTACTC
AGGTTTCTCGATCCCTAAACCAAAGCGGATGCTGTAACACGCACAAAACA
AGGCAGCAACTTCGCTTCTCAGAGCTTGTAATTTAGGTCAGCTTGTCCGG
CATGCGACATGAAACGTATACTTTCCCCAACTCTACACATCTCTCCAGCG
GCACGCTGGCTTGGTCAATTTAGCCAACCAGCTGCCATTCGTGGGGCTGG
AAGCTGTCATGTTTCATGTCTATTGTACCTAACCAAATAGCCACCGGCGG
CAAGATTCCTGACCGAGCCAGCGGGCCACACGAAAAATGCTTAGGACCGT
CGTTCTAAACGTTGTAAATATTTCTCTTTCCTCCAGTTATTAATGGAACT
TCATGGGGTGGTACTTTAATAATAGATTGTTTAGGCTTTTCGTTAAAATC
GTTTATAACTATTATTTTGTTTCTATGTTTTGCGTGAGTGAAGATTATCT
TTTTTTAGCACGGATTCGTGCTTATGAGAATTTTGTTTTCTTTTATTGGT
ATTTGTCTAAGCTTATGCTTATTGATTTCGTCTCATGATATTCTTTCAAT
TTATTCAAGTATGGAATATTTATCAATGATTTTTTATACCGGTCATAAAT
TAGATGAATTTGTTACCACACGAAAAAAATTTAGTAAAAAAATTAAAAGA
GGAGAAAAAAAAATTGGCGCAAAAAGCTCACCCAAATAGTTTACGCAATA
ACTATGAAACTTCCAAGGTTGTGCTTATTAGAATGAAACACAATTTAATT
ATATTACGTACTCTACTTATAAACTTGCCAAAGCTTGTTGTAGAAAAATT
GACATATAATCTAGAAAATGCAAAAATACGCATACACCATGATTATATTT
CTATAAAAAGTAGTCTTAATAATTTACATTAAAAAAAAGCATGATAAATC
TAGAAGAAAAAAAGAAAATACGTACAAAACACACAAAAAAATGTTTTAAG
GTGATTATATTTTTCTTTTGTCGATTATACAAAAAAAATTACAAACTTGG
AAAAAGGTACAACTCCAAGTTTAAACGATTAAAAACATGTTCAAGATCAA
TACCAAAACCTGCTCCTAAAGCAATGTCATACTATAACGAAAGTTTTCAC
AAAACGATCGTGGTGGCGTTTTGAGAGAAAGATATTTACATGCTTGGTCA
CAGCAACAGCAACGGCAATCGATGTATGTATCTATGTACTGTATGTGGAC
ATAACCCCCAATATCTGGTATGTGGTAACTGATTGCAAACATCAGCAGAG
CCTCGAAGGAAAGAGCGTAAGGGACCGAATATAGCACAACACATTCGAGT
GTTGTGTCAGGAAGAGTATGGATTACGAGCAAGACACCAACCAGACTAAG
GCAGAAAGGCGCCAAACAAACCCAAGGTAACCAACCACATGAGTTTTTGC
AACACAACTCACGCTTTACGATAAGATTAAATGTATTTTTTTTAGAAGAC
CCGCACTCATGGAATCGGAGCCCAGTGGACAAAACGAGAAAAGAGAAATA
AAAACTCAACGCCTAGAACGGTCCTACACGCCAACCAGCCACCACCATCG
GCTATAAAACCCCCATTACCCATGAACATCTCACCGGGCGGCGACATATG
TGCAGATAGATAGGTTAGAGTGTTTAGGTGAAAAACGGTACAAAGGATAT
TATTCTTGGTTTAGTACAGGCATGGACAGACTCTACACAAATGAGTAGGC
TTGCAGCACGCCAGGTTCACAGCGCCACAGTGTCTCACAGCGTGATGTAC
AAATTTAAAGTGGTTAATGTACACCACCACCACCACCATCACTACCATCA
CTTGCATTTACAATAGCGAGTCCTTGGCGTGCTACCTATGGGAAAAGCAG
CAACACATGGAGAACGTTTATCCGCAATAGGACGCCGACGTTGAAACGCT
ACCAAAAAGTCTCCAACATGTTGTAAAACGCGGTCGAAGCCTAGCGAGTG
CTTGCAGAAGCTACGCACGTGGAAACTCGAACTCTGAAATCACGAGCGTT
GTTGATGGAAACCACCTGTCACTTCTCACCTTTTTGAAGCTGAACTTCTC
GTTAGTGACCTGAAAGAGAATCTTGACGCGATCAACAGGTGCCACGACAG
ATTTAGCCAGCATCCCAGACAATCCACCAGCAACAACCCTCTTCAAAGTC
ACCATCAAATCGTCACGGTGATACTGTGAATGACAGCGCCGTACGTTGCA
GTGCAATGGTAGTACAGAGGAATCGGTGCAGCAACGTGCAGGACACCGAG
GGTATGTGAGAGGTCAAGCCCATCAGAGGAAACACAGAATATATATGCAG
ATGGGATGAATGAATACAGGGCAACGCGAACAGTCACTGCCCTAACACTT
GGATTGATGACACACGCCCTAGATCCTGGTGAGGGCAACATAACGATAGG
TGGTACTGGAGCATACTGCTACGATGGACTTGTACAGTCAGCAGGATTCT
CATCCTGCTAGAAAACTTGAAACCGACCATGTACTTCCTGTATAGTAAAT
AGTTTAACTTGCAGTTGAACGACTCACACGCAACAGCGTTCAACGTTTCA
AACTTTGTCCTGACACTGAACATACAGTGTACTTCTCATTCCCTCCCCTC
TCTGCCATTAGTGCCCCACCCAAGCTGATGTGCACCCCGCCTCGGTGAAC
TTACCGCAAGCTTGCCATTGGCGAGAGCGCTCAAGAACAAATTGCGTTCC
ATCGCTGGTGGAGTGCGAGATTCTGAATCTGCCTCCTGGTTGGTGCTATC
GTTTCCCACCTCAAGCAGGAGCGACGCGTGTTGGCTAGCTCGAGCGCCCA
TTACTCTGTCCACCCTCGTCATGAACCCCTCAAAGTCGATCAGGCCATTG
TCTCTATTTACTGCAGCAGTCTTGTCATCCTCCTGTACTGCAGGTCCGGA
GGTCTTATCCCCTCTGCTACTCGACGTTGCGGTAGTAGAATCCGCGTCGA
GGTTAGCGCCCGTTCTTGCTTGAAAACATTGAAACAGCTTTGCTCTAGAC
ACGAAGCCAGTTTCGCTCGGCTCACACTCCTCAAAGAATCGCCGCAGATT
GTTCTCTTTCTCTATATCCTCTTCTGTCGGCATAGCGAAAAATCTACAGC
AGTACTCCAGGCGCGACAAATATTCAATGGAACGCTCAAGGCTCTTGGCT
GTTGACACGTACTGCAGTGCTGTATTATTGTGTACTGGCGGCAAGTTTTC
GAGCTAGCGCGCTTTTCAACTGGGTCATTTTCCAGTGCACACGACGGCTT
AAAGGTTACCCTCTTCCCACTAGCTGCTCAATGATAACAGACGGAACACA
TTTAATCCTGTGAGAGGGCAACGATATTAGCATAATGTCAGCACTGGAGC
AACTTCTGGCCATGGGCTTCCCGGAGGACGCCGCGAAGAGCTGTTTACAG
GCGCACGGTGGAAATGTAGAGGAGGCGATCAATACATTACTCTCAACACC
TTGGCCAGAGCAAGAGCAGGCTTCAAGTAAGGTGAGACTTCGCAGATGGT
AAGTGCACCGACACCGCGCAGCAGCAGTAAATGCAAGCAAATGTAGCAAA
TGCATTTTTCTCAGCACCCTAGATCTCTCGATCTGTTCTACAGTATCAAG
GAGGTTTGCAATGATTGGAATTTTACCTGTTCTAATAACTGAAGTAGCAA
CACCGCCAAAGACACGCGGCATTACTCCCAGTATTCCAATACCCAACATT
CTATCACAGCATCATTTCGCCTGAATCAAACACCTGCAACAAACGCCACA
GATTATACGGCAGTGTATAGTATTATTTTGCTTTTGCTATCTCTAATGAA
CTGCAGGTAGTCCTGGCTCCCGGAAGTCAGTACGATGTGGACAACGGAAG
ATCTGCTTGCAGCTGCATTTGCTTGGAGGCAGCGATCTCAATACTTGGCC
AGCTGCGTGGCAAGAGAGAGTGGACGGGTTCACCGGATGATGTTCAGGTA
TGCATTGTTTGGTTCACCGCATTACAACGGATAAGAAAGAACACATCTTT
TCATCACACGAACAAAAGAACAACCAGCCCGCGTGAGGTTTGCAATAGCT
TATTGGCAACTTCAACTTCGTACAAATATTTTGCATTAAAAATTTCAACA
TGTCAATTACTCCGCAGTCCGATCTTGGGGGTGTTTTCCGTCGCCACAGA
ACATTTTGAGCGTTGGAGCGATCACATATGAGGGTTTGGTCGGAGCTGGC
GTACTCACGACCGAACACACATCTGTGGATGAAGTCGTTACGACTGTTTG
GAGGTATGCGATCGTGTTCAGCCATTTGGAATACTAATTTGTAATAAGCC
ATAATAGCTGAAAGCTGTCCGTACCGTCTGTGTTCACCTCATCGTATGTT
TCAACTTAGGGTGAAGATGGTGAAAGACTGTATGTTGTGGCAGTATATAT
AGCACGGAGTATAGCACCACCCAGGAGATGGATTGCCCTGTTCCATTTTC
TTGAAGATGTCGACGATGCACGTACTCACCGGCGCGTCTTCGAGGCGGTC
GCAACAAGTTATCTCCAGATTCCCGGTGCTGCGCCCTCTTGGTTACGGAA
AAAATGTGGCGGGTAATTAAAAAGCGTTTACACTGTCCATACTGTAGTCT
CATCGTTCACGCAGGGTGACGCAAGGTGGAAATGAACAGCGTTTGAACCT
TTGCCAACCCCTATCGTGGCGTCGCTTTCATGCAACTAAAGCTAATGAGG
ACTGAACACTCACAGCCCCTAGACATTGAACGCTCAAGGGCCCATGAGCA
GGAGCAATATCGTGAGGTAGTTCATGTATCGCACGTTTCACTTACAAAGC
AATTTGTTAGTACCATAAAACTGCGACACATCCCCATGGACAGATATCGT
GACGCGCTGGGTCTGGCGAGTTCAAGAGGATGTCATCAAAGCCTGCTCAG
CTCGGAAACCTCGTTCTCCAGAATAATGGAAGATATCAGGAACGAGCGGC
AGCGGAAGAGCTGCCCTATCGCGGTCACGATAACAAAGCCACCAGAAACG
GTGAGAAGCTGGCGTGGTACTGTAGTACACTGCACTGAACTAATCTGCAC
ACACGGCGGTCATGCGTGTATGGCGTGCGATGAGACCTTGGCCTTGTTTT
GTGCAAATGCATCTGGTGTACGTGTACCTCTCGTTTCTGGCAACCATCCT
CGCAGGCGGTCAACGTCAGCACTTAACATCGACGCCGACATCTGAGAGTA
AGTTTATAGTATTCTGTGTTGAATTTCGGGACGTTTTGTGAACCGTTGTG
GCTGCTTGTCATCCAACCCCCCTCCCCCCCCTCCCGAAGTTTGAATAATT
CCATGTGTCAGAGGTTTGTTTTTCCAGTGGTTAGGCTAGAGGTTGGCGTT
CAACCCTCTCGGGACTGAATATATATATAAACTGATTGTTTGGGACGGAC
GATTTGAGACCACGGCATGGTTCCGATTTTCCAGCTTTTTTGTTCGTATT
TCACCAAGTCAGTGATGTCTCAGACCTGAAACAATGAGAAATCGTCTGAA
AATGGCAGTTCATGGTTGACGCATTCCGCATTTTAATACATGCCACACAA
GATGATGCGTCATAACATGTCTTCTCAGAGTGACAATCTACCGGTGTCAA
ACTTCAATCTGGGTAGAAAAATGACCGCGAAGTCTCATGCATTTGTTTTT
GCTCGCCTCATGTCGGAACCAATTTTACTCTATCAAAAAACACCTCGTGT
TCTGGTAGACACAGGCTAGGCATTGATGGATAGAAAACCAGAAAACAACA
GTTGAAGTACCATAATGCCCTCTAAATTGGCACCGGGTGCGAAGGCCCTA
AAAACTCGACTGTGTAGATTGCACCCCAGTGCGGGCCACATGTGTGGGGG
ATGCGAAAATGAGAAAAACCCTTGCACGCGGAAGGGTGCGATACGCACGG
GGTGCGGACAGAGAAAAGCTCGCGCCATGTGCGAGCAGGACGTTTCAGAG
AAGCTAGCGAATGAACCGAAGGGCGGGGACGAAGGCACGGACGACGAGAA
CGATGGGAGCGACATCAATGCGTTCGATGTTATTGACTTAGGAAATGAAT
CCTATTCCGACGTCGAACTGCTGCTGTAGGGTCGGTTATTGCCGTGTGCT
CTTTCAGCACGCAGCCGTTTCAGTAGGCTGAAGGAGCAGGACCGTGAGGC
AGGTAGCGATTCTTTTTTGGGTTTTGTTCATGGTGCTGTTTCTGGGGGGG
GGGGTGGGGGGGTTCATGTTTCTGGAGTCGTAATTTTTGTCCGCGTTTTG
ATTTGTTGATTCCTGGGACTACAACCATCGTATTGAATATATTTTGATTA
TTTGATGCATGGCTTGAGTCACCAAATGACGGTAAAGAGCGAACGCCCGT
AAATTTATTGTGAGCCTTTGTGCTAGTGCACTACTGACCGTAGTCCATCA
GATGCGTCATGCATATACTAGTGCCTCCTACAATATACAACACCCAGATG
CTCGTTCTCCAGGCAACCCTCCGGCGTAATTTTGCTCGCACTCCCCTTTA
AGGTCGTACCCCCGTGCGCTTCAAAGGAGAGGTGTGTGAAAAGACAACAT
AGGTGTGTGCAGATCGCAATGGGGTGCGGACCAAAGGAGGCGTGTGGATC
AAGGAGGGTGCCAACTTCGAGGGTGTATTACAGTACATTATCCGCTCAAC
GTGTCGGTCTCTACTCGTGAGATTAAAATTACATGCAGCCGCCGACCTCA
GAAGCTACGCAGAGGTGTTTAAAGTGTCAGTGCTTCTTCCCTATTGACTG
GTAGTGTAGTGTGTTTAGTTTAACGCTATTGCGCCTCAAAATCCTCTATA
CTGTAGCTGTCTGTACTGTGCGTGGTAGGGTAACTATATTTCGTTTAGCA
CTGACTGTCTACTTACTGTACGGTGGAGTCGGCAATGATGCGGCGGACTG
TATGAGATCCATACTATGCGGCGCTTCCTGAAGCTGAGCTGCACTTGTGT
TCGTGTCATCTTTGTAGGTTACCAAATCCGGAGGGTATTGAGCTTACTGT
GCCATGTGTGCCATACGCATGTGTCATGCATGCGATTTGCTTCGCTGAAG
ACTCCCTGCTCTTTTATGCCGTGGTTCATAATGCCTGAGCACTAATGGTA
CCTAATGCGCGATAGTCGATTTCACTAGGAGATCAAAAATATTATTTTTA
GTGCACTGACTGACGATTGACATGTATTTAATTTTCGGACCAGGCGGGCC
GGTAACTCCCAGTTCTTGAGCCATGGCCCAAAAATCGTTTTTAGCCCTAG
AAGAGGGGGGCGGGGTATCCACAAACTGAACCAACAGGGGGGGGGGGGGG
ATGACCCATATATCCCCTCTTTTATACATTTATTATCACTACATACCCCA
TGGCGCAGATAAAATTCAATTCTTATTGAAAGGCGCGGGCTATACGGCAC
TAATGGTGGGAAACAGCAAGCATGTGGCTGCGGGTCTGAGCGGCTAGTTT
GTTGGCAAATCTAATCTCGCCGCGTGCACTAGTGCTTGCATAGCTATCTA
CCCGCTTTTTTTTTCTTCGGCCCCCGGGAGATCTGGAAGGAACCCCTGTC
ATGCACTTATACAATTTTGCTTTCGTGCGCCGCTTTGCCGGTTTCCCAGC
GCGCCCCGCTTTCACCTTATCTTGATCCCTGTGTGGGATGTCATCACAAC
GGTTTCCGAGGACGGGTAGGCACCTAGGCAAGCGCTACTCAGTTCTTACC
CAGGTAGTCTCGAAGTCAAACCTAGTAAACCTCCTGCAAACACTCCCAGG
TTGAGTCTGTACACGAGTCACCCTACCCATTCGGGCGTCGGTCCTCAGCT
ATCTACCCGCTACTTCTGGATAAATCTCATGATATACAGTACAGCATTGT
AGTAAGTGCTCAAATAGGTAGTTATTAATCGTCACTGCCTGCTGCAGGGT
GCTGATAAGCTGACTGTCGGGTCATGTGACCGATGTAGTTTGCTTACGAT
AGCCTCATACTGTCAAAACAGTGCATTGAAAATTAGTCTCAATTAGAGGG
GTGAAAGGGCGCGGGAGGCACATTCCAAGGGAAAAATTACGGGGCCCCTC
GTTCGGACTGTTTTAGGGGCAAGCATTCCACTGCATACCTTCATCCTGAG
CGAGGCTTAGGATTGATTGGGTGAAGTTTTCTCCGCCTGGTCTCTTCTAG
CTCTCCGCTGTTAGCTCCCCGCTGTATATGGTTTGCACCGTGGTTTTCAT
TGGTGTTCGTTTCATCGATTTGTTTTTCTTCTTTTCGGATAGTTATGCCA
GGTAGTATGCACACAAATAAGTTCTATTTCTACTGTCAGCCGAGGAGTCT
GACGGAAATGCAAACACCCCCTGACACCAGCAAATGACCGTTGCGCCCTA
TCCCGTTGAATTAGGTTGTGGCTTTCCTGCCCCCGGAGAATGGGTCTGAT
ACAAGTAGTGCCGGAACGGAAGCGCCGTCCGCTCCTCAGCAGTGGCTTTT
GTTTGACTCGCACCCACGCCCGCAGCTCGGACTGACTGGAGCAAGCGTTC
AGTCGTTTGAAGCAGAGTCAGCACTTGTGACAGCGCTCAATCTGATTTTC
CCTGTCGTAGACGTCGAGAGCAACAGTTTATTGGCGAGCATGTACAACAT
GCTCGATTGCACTCCGCTGTTTCTCAAACAGCGGGCGACATAAAACATTT
CCGTTGGTCAGGAGATACTTTCGCGTCTTGCATTCCCTACACAGAGTGTC
TGTGGCTGTATATTCTGTTCGCGCCTAGTTGTTAATCGTGGCTACACTTG
GACGTGCGCCTTCAGACTACCCACCGGTTGCGTTACTCGAGTAGAAGTTT
CGAACGACCACTGTATATTTTTGGTGTGGACCTTTTTGTTAAGTTGTGCA
TGTGCGCAAAACAAATTGCCATTTTAAAATGGTGTAAATATAATGCTGAT
CTGAAAAGGACCATCACAACGGTTGTGTATTTGGTACTTTGGTATTTAGT
ATGGCATGCTGAAGTGAGAGGAATGAGGGCAATTGCGTAGGGATTTTGCT
GAGTGCCGAACTTCGTGTCTTGTACGGCAAAAAGTGATCGGAGACAGTCA
GTTGGGTAAGCTACTATACCGGTCAGCACAGTGCGGTACCAATTGTAAGT
TGTAAATGGAGAATAGTCTGCTTATTCAAGAAGGGACCATTCCGTGCCCG
TCCGGTAGTAGGCGAGTATAGCACCTCACAATGGGAGTGTATTCTGCTCG
TTTGAATTTGGAGTCTAGGTGGGGGGGAGGTGAGCTGGACACCTGCGCCA
AAGAGGTGAGGGGAACCAGTTGATTTCTTATTGGTGCATAAGACGATGAC
AAGAGGAAATCATCCTTGTGACCCCCTCTTATCTGTATTGTCATGATCCA
AGTCTGATCAAGCAATCGACACGAAGTTGCTAATGAGAACCTGTCCGAGA
TCAACAAATACTGTTTTCAACATGATATTGGTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3206:1995..13227- >mRNA_H-paniculata_contig3206.8632.1 ID=mRNA_H-paniculata_contig3206.8632.1|Name=mRNA_H-paniculata_contig3206.8632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig3206:1995..13227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGCACTGGAGCAACTTCTGGCCATGGGCTTCCCGGAGGACGCCGC
GAAGAGCTGTTTACAGGCGCACGGTGGAAATGTAGAGGAGGCGATCAATA
CATTACTCTCAACACCTTGGCCAGAGCAAGAGCAGGCTTCAAGTAAGATG
TCAGCACTGGAGCAACTTCTGGCCATGGGCTTCCCGGAGGACGCCGCGAA
GAGCTGTTTACAGGCGCACGGTGGAAATGTAGAGGAGGCGATCAATACAT
TACTCTCAACACCTTGGCCAGAGCAAGAGCAGGCTTCAAGTAAGGTAGTC
CTGGCTCCCGGAAGTCAGTACGATGTGGACAACGGAAGATCTGCTTGCAG
CTGCATTTGCTTGGAGGCAGCGATCTCAATACTTGGCCAGCTGCGTGGCA
AGAGAGAGTGGACGGGTTCACCGGATGATGTTCAGGTAGTCCTGGCTCCC
GGAAGTCAGTACGATGTGGACAACGGAAGATCTGCTTGCAGCTGCATTTG
CTTGGAGGCAGCGATCTCAATACTTGGCCAGCTGCGTGGCAAGAGAGAGT
GGACGGGTTCACCGGATGATGTTCAGGGTGAAGATGGTGAAAGACTGTAT
GTTGTGGCAGTATATATAGCACGGAGTATAGCACCACCCAGGAGATGGAT
TGCCCTGTTCCATTTTCTTGAAGATGTCGACGATGCACGTACTCACCGGC
GCGTCTTCGAGGCGGTCGCAACAAGTTATCTCCAGATTCCCGGTGCTGCG
CCCTCTTGGTTACGGAAAAAATGTGGCGGGGTGAAGATGGTGAAAGACTG
TATGTTGTGGCAGTATATATAGCACGGAGTATAGCACCACCCAGGAGATG
GATTGCCCTGTTCCATTTTCTTGAAGATGTCGACGATGCACGTACTCACC
GGCGCGTCTTCGAGGCGGTCGCAACAAGTTATCTCCAGATTCCCGGTGCT
GCGCCCTCTTGGTTACGGAAAAAATGTGGCGGATATCGTGACGCGCTGGG
TCTGGCGAGTTCAAGAGGATGTCATCAAAGCCTGCTCAGCTCGGAAACCT
CGTTCTCCAGAATAATGGAAGATATCAGGAACGAGCGGCAGCGGAAGAGC
TGCCCTATCGCGGTCACGATAACAAAGCCACCAGAAACGATATCGTGACG
CGCTGGGTCTGGCGAGTTCAAGAGGATGTCATCAAAGCCTGCTCAGCTCG
GAAACCTCGTTCTCCAGAATAATGGAAGATATCAGGAACGAGCGGCAGCG
GAAGAGCTGCCCTATCGCGGTCACGATAACAAAGCCACCAGAAACGGTTG
TGGCTTTCCTGCCCCCGGAGAATGGGTCTGATACAAGTAGTGCCGGAACG
GAAGCGCCGTCCGCTCCTCAGCAGTGGCTTTTGTTTGACTCGCACCCACG
CCCGCAGCTCGGACTGACTGGAGCAAGCGTTCAGTCGTTTGAAGCAGAGT
CAGCACTTGTGACAGCGCTCAATCTGATTTTCCCTGTCGTAGACGTCGAG
AGCAACAGTTTATTGGCGAGCATGTACAACATGCTCGATTGCACTCCGCT
GTTTCTCAAACAGCGGGCGACATAAGTTGTGGCTTTCCTGCCCCCGGAGA
ATGGGTCTGATACAAGTAGTGCCGGAACGGAAGCGCCGTCCGCTCCTCAG
CAGTGGCTTTTGTTTGACTCGCACCCACGCCCGCAGCTCGGACTGACTGG
AGCAAGCGTTCAGTCGTTTGAAGCAGAGTCAGCACTTGTGACAGCGCTCA
ATCTGATTTTCCCTGTCGTAGACGTCGAGAGCAACAGTTTATTGGCGAGC
ATGTACAACATGCTCGATTGCACTCCGCTGTTTCTCAAACAGCGGGCGAC
ATAA back to top
|