mRNA_H-paniculata_contig32015.8624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32015.8624.1
Unique NamemRNA_H-paniculata_contig32015.8624.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: D7G511_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G511_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.150e-30
Identity = 65/101 (64.36%), Postives = 84/101 (83.17%), Query Frame = 3 
Query:  225 DFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDP-TIARTLACERRSKRPHSGRAWQAYATVMERTGNVREAAHAQGLANAYGIGQGGKGAN 524
            +F+  VS+LLPLRYH+ A+GGSK Q DV++LTL+DAALRLP+  T+ARTL CERR +RP SGRAW+A+ATVMER G++R+A  A+ L+  +GIGQGG GAN
Sbjct:  515 EFDEAVSLLLPLRYHLDAIGGSKAQQDVVHLTLLDAALRLPEKATVARTLVCERRLQRPTSGRAWEAFATVMERDGDMRQAFEARKLSFEFGIGQGGVGAN 615
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: A0A1V9ZHB0_9STRA (Tetratricopeptide repeat protein 38 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHB0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.060e-8
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 3 
Query:  219 QEDFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHSGRAWQAYATVMERTGNVREAAHAQGLANAYGIGQGGKGA 521
            ++ ++   ++ L +R  +  LGGSK +H++ ++ LIDAA R  D ++A  +  ER + +P S + W  +ATVME  G+      A+ ++   G+GQ G GA
Sbjct:  407 EQQYQEAANLFLQIRSQIHLLGGSKVEHELYDMLLIDAATRGRDYSLAHLILNERINAKPQSAQYWHTFATVMEGLGDDDAVQGARQMSYVLGLGQAGHGA 507
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: UPI00156F2790 (tetratricopeptide repeat protein n=1 Tax=Streptomyces albus TaxID=1888 RepID=UPI00156F2790)

HSP 1 Score: 60.8 bits (146), Expect = 1.360e-6
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 3 
Query:  219 QEDFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHSGRAWQAYATVMERTGNVREAAHAQGLANAYGIGQGGKGA 521
            Q  +ER + +LLPLR  +   GGS  Q DV+  TL++AALR     +AR L  ER S RP S   W   A + +R G    AA A+  A A  +   G+ A
Sbjct:  371 QGRYERAMELLLPLRGRLQTFGGSHAQRDVVQRTLVEAALRARRWEVARMLLSERLSLRPTSPYNWLGQARLADRLGQAAVAATAR--AKAASLAATGRSA 469
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: A0A7Z0VHV2_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Thiodiazotropha endolucinida TaxID=1655433 RepID=A0A7Z0VHV2_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 2.290e-6
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  222 EDFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHS 404
            ED++R V ++ P+R   +  GGS  Q D++NLTLI+AALR  D  +A  L  ER  KRP S
Sbjct:  365 EDYQRTVELIRPVREIANRFGGSHAQRDILNLTLIEAALRAGDAILANALIAERMEKRPDS 425
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: A0A0A0CWF6_9PROT (Peptidylprolyl isomerase (Fragment) n=1 Tax=Inquilinus limosus MP06 TaxID=1398085 RepID=A0A0A0CWF6_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 3.180e-6
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 3 
Query:  225 DFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHSGRAWQAYATVMERTGN 452
            D+  VV +L+P+R      GGS  Q DV+NLTL++AALR     +ARTLA ER + +P S   W+  A  +   G+
Sbjct:  202 DYATVVELLVPVRAVAHRFGGSHAQRDVLNLTLVEAALRGGQTDVARTLAAERVAAKPGSPFNWRLTARALRLAGD 277
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: A0A1G0IBG1_9GAMM (Peptidylprolyl isomerase (Fragment) n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 TaxID=1798290 RepID=A0A1G0IBG1_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 4.810e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:  219 QEDFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHS 404
            Q DF   V++L  +R+     GGS  Q DV++LTL++AA+R  DP +AR LA ER + RP S
Sbjct:  233 QGDFSTAVTLLRGIRHQAHRFGGSHAQRDVIDLTLVEAAMRSGDPALARGLAAERATLRPRS 294
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: UPI0004021C62 (tetratricopeptide repeat protein n=1 Tax=Azohydromonas australica TaxID=364039 RepID=UPI0004021C62)

HSP 1 Score: 57.8 bits (138), Expect = 1.280e-5
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 3 
Query:  225 DFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHS 404
            D+ R V++L P+R+     GGS  Q D+++LTLI+AALR  D  +AR LA ER + RP S
Sbjct:  367 DYARCVALLRPVRHRAHRFGGSHAQRDLLDLTLIEAALRAGDQALARGLAAERAALRPAS 426
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: A0A0Q7CKQ6_9BURK (Peptidylprolyl isomerase n=1 Tax=Methylibium sp. Root1272 TaxID=1736441 RepID=A0A0Q7CKQ6_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-5
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 3 
Query:  219 QEDFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHS 404
            Q DF R   +L P+R      GGS  Q D+++L+L++AALR  DP +A  LA ER + RPHS
Sbjct:  365 QGDFARCCELLRPIRSRAHRFGGSHAQRDLIDLSLLEAALRGGDPVLAEALAAERVALRPHS 426
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BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: A0A4Z0BT85_9BURK (Tetratricopeptide repeat protein n=1 Tax=Ramlibacter henchirensis TaxID=204072 RepID=A0A4Z0BT85_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 2.280e-5
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 3 
Query:  228 FERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHS 404
            F   V +L PLR++    GGS  Q D+++LTLI+AA+R    +IA  L  ER S+RPHS
Sbjct:  366 FSDTVDLLRPLRHYAHRFGGSHAQRDLIDLTLIEAAIRSGQDSIASALVAERASRRPHS 424
[Close]
BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Match: UPI0012F7284E (tetratricopeptide repeat protein n=1 Tax=Azohydromonas aeria TaxID=2590212 RepID=UPI0012F7284E)

HSP 1 Score: 56.6 bits (135), Expect = 3.050e-5
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  225 DFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAALRLPDPTIARTLACERRSKRPHS 404
            D  R V++L P+R+     GGS  Q D+++LTLI+AALR  D  +AR LA ER + RP S
Sbjct:  367 DHARCVALLRPIRHRAHRFGGSHAQRDLLDLTLIEAALRAGDRALARGLAVERAALRPRS 426
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32015.8624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G511_ECTSI2.150e-3064.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9ZHB0_9STRA1.060e-833.66Tetratricopeptide repeat protein 38 n=1 Tax=Thraus... [more]
UPI00156F27901.360e-639.60tetratricopeptide repeat protein n=1 Tax=Streptomy... [more]
A0A7Z0VHV2_9GAMM2.290e-647.54Uncharacterized protein n=1 Tax=Candidatus Thiodia... [more]
A0A0A0CWF6_9PROT3.180e-642.11Peptidylprolyl isomerase (Fragment) n=1 Tax=Inquil... [more]
A0A1G0IBG1_9GAMM4.810e-646.77Peptidylprolyl isomerase (Fragment) n=1 Tax=Gammap... [more]
UPI0004021C621.280e-548.33tetratricopeptide repeat protein n=1 Tax=Azohydrom... [more]
A0A0Q7CKQ6_9BURK1.290e-546.77Peptidylprolyl isomerase n=1 Tax=Methylibium sp. R... [more]
A0A4Z0BT85_9BURK2.280e-547.46Tetratricopeptide repeat protein n=1 Tax=Ramlibact... [more]
UPI0012F7284E3.050e-548.33tetratricopeptide repeat protein n=1 Tax=Azohydrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32015contigH-paniculata_contig32015:182..1791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue4.7e-28
Seed eggNOG ortholog2880.D7G511
KEGG rclassRC02795
KEGG koko:K02325
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
EggNOG OGsKOG2610@1,KOG2610@2759
EC2.7.7.7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size1029
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32015.8624.1prot_H-paniculata_contig32015.8624.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32015 684..1603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.6657815-UTR-H-paniculata_contig32015:181..6831622929987.6657815-UTR-H-paniculata_contig32015:181..683Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32015 182..683 -
1691481099.290622-UTR-H-paniculata_contig32015:181..6831691481099.290622-UTR-H-paniculata_contig32015:181..683Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32015 182..683 -
1622929987.716323-UTR-H-paniculata_contig32015:1603..17911622929987.716323-UTR-H-paniculata_contig32015:1603..1791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32015 1604..1791 -
1691481099.3255253-UTR-H-paniculata_contig32015:1603..17911691481099.3255253-UTR-H-paniculata_contig32015:1603..1791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32015 1604..1791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.6885078-CDS-H-paniculata_contig32015:683..8571622929987.6885078-CDS-H-paniculata_contig32015:683..857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32015 684..857 -
1691481099.3020313-CDS-H-paniculata_contig32015:683..8571691481099.3020313-CDS-H-paniculata_contig32015:683..857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32015 684..857 -
1622929987.7026796-CDS-H-paniculata_contig32015:1438..16031622929987.7026796-CDS-H-paniculata_contig32015:1438..1603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32015 1439..1603 -
1691481099.3151832-CDS-H-paniculata_contig32015:1438..16031691481099.3151832-CDS-H-paniculata_contig32015:1438..1603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32015 1439..1603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32015.8624.1

>prot_H-paniculata_contig32015.8624.1 ID=prot_H-paniculata_contig32015.8624.1|Name=mRNA_H-paniculata_contig32015.8624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MQKLEDVLPLQEDFERVVSILLPLRYHVSALGGSKGQHDVMNLTLIDAAL
RLPDPTIARTLACERRSKRPHSGRAWQAYATVMERTGNVREAAHAQGLAN
AYGIGQGGKGAN*
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mRNA from alignment at H-paniculata_contig32015:182..1791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32015.8624.1 ID=mRNA_H-paniculata_contig32015.8624.1|Name=mRNA_H-paniculata_contig32015.8624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1610bp|location=Sequence derived from alignment at H-paniculata_contig32015:182..1791- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTAATTTTCGTGGTAAATACGCCAATAATTCGTACTTTTACGAGGG
GTGAATATTTTCGACCGAAGTCGGCATTTTCATCTGTTGCTCTGATTGAT
CAAATTTGCGTAGTCAGTCACAAGACGTCAGGCTAGCGAAGAAACATTAC
ACCGACCGGAAATTCGCCTTGATTCACTGGACGATTGAATGCAAAAACTT
GAAGACGTGTTGCCCCTGCAGGAAGACTTTGAGCGGGTGGTATCTATTCT
TCTTCCGCTGAGATACCATGTGAGCGCTCTCGGCGGGAGCAAGGGACAAC
ACGATGTGATGAATCTCACTCTAATCGATGCAGCTTTACGTCTTCCTGAT
CCGGTAAGATGCAGGATATAGGGGGGGGCCTAGAGGGGCTGTAGGGGCCA
ACACTTGACTTTTCCATTTCCGTGGCTGTTATCGCATATGAGTCTATCAG
ATTTCAGCTTTCCAACGATTCTAATCGCAACCTCTGAACAGATTTGGATC
TGGAGATATAATCTGCCAAGTACAACTGACTTTACTAATGGCACAGAAGG
AGGTACTGTACTCCGGTAGATGTCATGCGGAATATTCACGGACATGGTGT
AAGAGATTGGGATGCAAGGACTTTGTCACGCACATCTCGCTTGACCAGCT
AGCTCAAAGCTCTCACACTAGGTTTAGCTGAGTCCCAGCTAAGCAGCGCC
ATCTTGCCCACTCCCTCCATGATTCGCTAGTGCCTAGTAGTATAGATTCA
CGCTGACCTCACCGTGACAAGCACACCCCTCCCCCCCCCAAATATTATAT
GGATCAGCAGACACGCGGCTTGCTTGTCGAGTTTTGTTTCACGTTTGCTG
CTCCTGGTGCATTTAACCCCCCCCCTCCCCTCCCTACCTGCCCCCCCTCC
CGATGCCGGCCTTCCGGCCCCTCGCTCGCGTTAGACTATCGCGAGGACGT
TGGCGTGCGAACGGCGAAGCAAGAGGCCACATAGCGGTCGTGCATGGCAG
GCGTACGCAACTGTTATGGAGAGAACGGGTAACGTGCGAGAGGCGGCGCA
CGCTCAGGGTCTAGCAAACGCTTATGGCATCGGCCAAGGCGGGAAGGGAG
CCAACTGATACTTTATTGTCGAGTTGTAGCACTCAATCGTGTTTTGGTGT
TAGTTTCCTATTCTTCGATATGTCAGTGTTGAGTCTTGAGAGGAGATCGA
TTCATTACTTGGAGAGAAGGCGTGTAACTAACGTACATGTGGAAGAAAAG
AGCCTAAGACGACGTAAACCCAAGTTTTCACGTTTGTGTTCCCTGCTTCG
TCTGTCTCGCTTCTTTTTCTTTTTTTTTCCTTGAAAGGAGGGGAGGAAAC
CTTTGCCTAACACGTACCCCGAAAACGGGTTCGTGTGTCGAAGGCCTGAG
TAGGTCCGTAGATCATGTGGGGACGGCACCCCGAGCGTTTGCAAGACTTT
GCTCAGGGTAGTGCGGGACTCTCACCCAATATAACCCCCCAATGTTGACC
GTCAACCTGGCGCGGTTACGCGCCGCCCTACTCGAACGAGCTTCGGCCCT
GGGAGTGCGTCTAGCTGGTTGTCCTCCGTCCCTCACTTCATCCAACTTGC
GACGTTTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32015:182..1791-

>mRNA_H-paniculata_contig32015.8624.1 ID=mRNA_H-paniculata_contig32015.8624.1|Name=mRNA_H-paniculata_contig32015.8624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig32015:182..1791- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAACTTGAAGACGTGTTGCCCCTGCAGGAAGACTTTGAGCGGGT
GGTATCTATTCTTCTTCCGCTGAGATACCATGTGAGCGCTCTCGGCGGGA
GCAAGGGACAACACGATGTGATGAATCTCACTCTAATCGATGCAGCTTTA
CGTCTTCCTGATCCGATGCAAAAACTTGAAGACGTGTTGCCCCTGCAGGA
AGACTTTGAGCGGGTGGTATCTATTCTTCTTCCGCTGAGATACCATGTGA
GCGCTCTCGGCGGGAGCAAGGGACAACACGATGTGATGAATCTCACTCTA
ATCGATGCAGCTTTACGTCTTCCTGATCCGACTATCGCGAGGACGTTGGC
GTGCGAACGGCGAAGCAAGAGGCCACATAGCGGTCGTGCATGGCAGGCGT
ACGCAACTGTTATGGAGAGAACGGGTAACGTGCGAGAGGCGGCGCACGCT
CAGGGTCTAGCAAACGCTTATGGCATCGGCCAAGGCGGGAAGGGAGCCAA
CTGAACTATCGCGAGGACGTTGGCGTGCGAACGGCGAAGCAAGAGGCCAC
ATAGCGGTCGTGCATGGCAGGCGTACGCAACTGTTATGGAGAGAACGGGT
AACGTGCGAGAGGCGGCGCACGCTCAGGGTCTAGCAAACGCTTATGGCAT
CGGCCAAGGCGGGAAGGGAGCCAACTGA
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