mRNA_H-paniculata_contig31944.8600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31944.8600.1
Unique NamemRNA_H-paniculata_contig31944.8600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31944.8600.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.690e-20
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:    1 VKDSLHPRGTVAIMVPHPWHLHAGRIYSALVHASVGLHVEDHPLLLQCKGMRAGRTSQNAVNHVRYTAYMMMLAHNDPDDGAGFTCNSSGPI----------RAALPLMNDIPVESAKTDIPPRCCLFLVNR 366
            V+  +HP GT+A++VPHPW  H  R+  A+  A VGL VEDHPL+L       GR    A NH++    M++L HN+   GA FTCN    +            ++ LM D+  E A TDI  R   FL+NR
Sbjct:  384 VRGRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSDASPSMQLMTDVEYEGAATDIVMRPLHFLINR 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31944.8600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE2.690e-2040.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31944contigH-paniculata_contig31944:1533..2240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.0092533-CDS-H-paniculata_contig31944:1532..18191622929984.0092533-CDS-H-paniculata_contig31944:1532..1819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31944 1533..1819 -
1691481097.8037784-CDS-H-paniculata_contig31944:1532..18191691481097.8037784-CDS-H-paniculata_contig31944:1532..1819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31944 1533..1819 -
1622929984.020009-CDS-H-paniculata_contig31944:2158..22401622929984.020009-CDS-H-paniculata_contig31944:2158..2240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31944 2159..2240 -
1691481097.8126569-CDS-H-paniculata_contig31944:2158..22401691481097.8126569-CDS-H-paniculata_contig31944:2158..2240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31944 2159..2240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31944.8600.1prot_H-paniculata_contig31944.8600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31944 1533..2240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31944.8600.1

>prot_H-paniculata_contig31944.8600.1 ID=prot_H-paniculata_contig31944.8600.1|Name=mRNA_H-paniculata_contig31944.8600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
VKDSLHPRGTVAIMVPHPWHLHAGRIYSALVHASVGLHVEDHPLLLQCKG
MRAGRTSQNAVNHVRYTAYMMMLAHNDPDDGAGFTCNSSGPIRAALPLMN
DIPVESAKTDIPPRCCLFLVNR*
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mRNA from alignment at H-paniculata_contig31944:1533..2240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31944.8600.1 ID=mRNA_H-paniculata_contig31944.8600.1|Name=mRNA_H-paniculata_contig31944.8600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at H-paniculata_contig31944:1533..2240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACAGCCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCA
CCCTTGGCATCTGCACGCTGGACGCATCTACAGTGAGTATTTTGTCTTTG
CTGTTTGTGCAACTTTATAAAAAATACGACATTGCTGTAACATGGAAGCC
CATCGACCGCTTCTGTCCACTATACCCAATGGTTTATGGGAGGAGAAAGT
AGCGCGTACAAAGCACAATAGAGTGTGCAACATGATTGCATCAAGGTGTA
ATGTGAACGTGCGATTGGGGTATCACTGGACATCCATTCTACGTTTTTTC
ACATGTTGCACGATAAACTCCGCCTGTTGAGGCATATGAACGACTACGGA
GGTATTGGAGCACACACATATCGGGTGTATTCCAAACATCAACGCATTCC
GTCGACTTACTGTGTTTGCAGGTGCTCTGGTCCATGCATCGGTAGGATTG
CACGTTGAGGATCACCCACTTCTCCTCCAGTGCAAGGGTATGAGGGCCGG
GCGCACATCGCAGAATGCTGTCAATCATGTACGTTACACTGCATACATGA
TGATGTTGGCACACAACGACCCGGATGACGGGGCAGGCTTCACGTGCAAC
AGCAGCGGTCCCATCAGAGCAGCCCTTCCATTGATGAACGACATACCTGT
GGAGAGTGCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTA
ACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31944:1533..2240-

>mRNA_H-paniculata_contig31944.8600.1 ID=mRNA_H-paniculata_contig31944.8600.1|Name=mRNA_H-paniculata_contig31944.8600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig31944:1533..2240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACAGCCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCA
CCCTTGGCATCTGCACGCTGGACGCATCTACAGTGAAAGACAGCCTGCAC
CCCCGTGGGACTGTTGCAATCATGGTACCTCACCCTTGGCATCTGCACGC
TGGACGCATCTACAGTGCTCTGGTCCATGCATCGGTAGGATTGCACGTTG
AGGATCACCCACTTCTCCTCCAGTGCAAGGGTATGAGGGCCGGGCGCACA
TCGCAGAATGCTGTCAATCATGTACGTTACACTGCATACATGATGATGTT
GGCACACAACGACCCGGATGACGGGGCAGGCTTCACGTGCAACAGCAGCG
GTCCCATCAGAGCAGCCCTTCCATTGATGAACGACATACCTGTGGAGAGT
GCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTG
AGTGCTCTGGTCCATGCATCGGTAGGATTGCACGTTGAGGATCACCCACT
TCTCCTCCAGTGCAAGGGTATGAGGGCCGGGCGCACATCGCAGAATGCTG
TCAATCATGTACGTTACACTGCATACATGATGATGTTGGCACACAACGAC
CCGGATGACGGGGCAGGCTTCACGTGCAACAGCAGCGGTCCCATCAGAGC
AGCCCTTCCATTGATGAACGACATACCTGTGGAGAGTGCCAAGACGGATA
TACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTGA
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