mRNA_H-paniculata_contig31925.8597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31925.8597.1
Unique NamemRNA_H-paniculata_contig31925.8597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: D7G1M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M4_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.120e-27
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 ESGWDYSQVVLVVVIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEGDKDSPGGGRR 192
            ESGW +SQV + V I+LW  IYQELW+REEK+IAVKWGT+GFEE EKDRPNFEGDKDSPGGGRR
Sbjct:  512 ESGWTFSQVSMAVGIVLWSVIYQELWDREEKVIAVKWGTSGFEEIEKDRPNFEGDKDSPGGGRR 575
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.250e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 SGWDYSQVVLVVVIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEGD 165
            S  D  Q+ +  +I++WG +YQE WEREEK +AVKWGT GFEE+EKDRP FEGD
Sbjct: 1256 SELDPVQIGVAAMIVVWGAVYQEFWEREEKAVAVKWGTRGFEESEKDRPQFEGD 1309
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: A0A7S3XKI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKI6_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 6.860e-11
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 ESGWDYSQVVLVVVIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEGDKDSP 177
              G +Y QV  V V+ILW  +Y+  W++E  LIAV WGT GFEE E DRP F G  + P
Sbjct:   63 SEGVNYYQVAFVTVVILWTVLYKTHWDQESALIAVAWGTHGFEEEEADRPQFRGWPEEP 121
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: A0A7S3USK5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USK5_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-8
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 ESGWDYSQVVLVVVIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEGDKDSP 177
            E G+ Y    + V+++L  +     W+ EE+ +AVKWGT GFEE EKDRP F+ D++ P
Sbjct:  124 EEGFQYWTAAVCVLVVLQTSAMHVGWKAEEEALAVKWGTEGFEEQEKDRPAFKADENEP 182
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: A0A7S0SY17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SY17_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.210e-7
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 DYSQVVLVVV---IILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEGD 165
            +YS   L V    I +WG I  E W+++EK+ A++WGT G+EE E+DRP+FEG+
Sbjct:  247 NYSASFLPVYAYFISVWGIIMLEYWKQKEKMYAIRWGTVGYEENERDRPDFEGE 300
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: G0QM98_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QM98_ICHMG)

HSP 1 Score: 48.9 bits (115), Expect = 4.820e-5
Identity = 19/41 (46.34%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   40 VIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEG 162
            +II+W T++ E+W+RE+ L ++++G   FEE E +RP FEG
Sbjct:  567 IIIIWSTLFVEMWKREQVLFSIEFGQQDFEEDEAERPEFEG 607
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BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Match: A0A662XJH4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJH4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.110e-5
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 1 
Query:   13 DYSQVVLVVVIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRPNFEGDK 168
             Y  V   + ++LW +++ E+W+R+  L+   WG  GF+E    RP F G K
Sbjct: 1773 SYILVAFAIFVVLWSSLFSEIWKRKNGLLGALWGLHGFQETSHYRPQFRGTK 1824
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31925.8597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G1M4_ECTSI2.120e-2779.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL56_9STRA1.250e-1562.96Calcium-activated chloride channel-domain-containi... [more]
A0A7S3XKI6_HETAK6.860e-1150.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3USK5_HETAK2.500e-844.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0SY17_9STRA1.210e-748.15Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
G0QM98_ICHMG4.820e-546.34Uncharacterized protein n=1 Tax=Ichthyophthirius m... [more]
A0A662XJH4_9STRA9.110e-534.62Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31925contigH-paniculata_contig31925:1741..2682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.8e-23
Seed eggNOG ortholog2880.D7G1M4
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-26_000980.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons3
Model size194
Cds size192
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31925.8597.1prot_H-paniculata_contig31925.8597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31925 1741..2680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.6902006-CDS-H-paniculata_contig31925:1740..17641622929983.6902006-CDS-H-paniculata_contig31925:1740..1764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31925 1741..1764 +
1691481097.6089523-CDS-H-paniculata_contig31925:1740..17641691481097.6089523-CDS-H-paniculata_contig31925:1740..1764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31925 1741..1764 +
1622929983.7046208-CDS-H-paniculata_contig31925:2105..22271622929983.7046208-CDS-H-paniculata_contig31925:2105..2227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31925 2106..2227 +
1691481097.6203136-CDS-H-paniculata_contig31925:2105..22271691481097.6203136-CDS-H-paniculata_contig31925:2105..2227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31925 2106..2227 +
1622929983.7237296-CDS-H-paniculata_contig31925:2634..26801622929983.7237296-CDS-H-paniculata_contig31925:2634..2680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31925 2635..2680 +
1691481097.6290245-CDS-H-paniculata_contig31925:2634..26801691481097.6290245-CDS-H-paniculata_contig31925:2634..2680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31925 2635..2680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31925.8597.1

>prot_H-paniculata_contig31925.8597.1 ID=prot_H-paniculata_contig31925.8597.1|Name=mRNA_H-paniculata_contig31925.8597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
ESGWDYSQVVLVVVIILWGTIYQELWEREEKLIAVKWGTAGFEEAEKDRP
NFEGDKDSPGGGRR
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mRNA from alignment at H-paniculata_contig31925:1741..2682+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31925.8597.1 ID=mRNA_H-paniculata_contig31925.8597.1|Name=mRNA_H-paniculata_contig31925.8597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=942bp|location=Sequence derived from alignment at H-paniculata_contig31925:1741..2682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATCCGGATGGGACTACTCGCAGGTGATTGGTTGCCTCGAGACGCTGAC
CCGTCTCGACTTGACGGGGTATTTCGTTGCCCGCTGCAGAGCTTCTCAGT
GTGGCCTATAGTTCCAGGTTTAATAGCGCATGTGGGATTTGACGGGTTGA
GAGAGAGAACATGAGATAACTGACCTGATGAGCCTCCCTTATACACACTT
CTGTTCATATAAAAATCGATAATATTCGGGTGAGCCGTTGTTCATAGTAA
CGGCATGCAATAACTTACGCCGCTACACACTATGTTTCCATTCGGATATA
CTCTTAAAAAGCAACAGTAACACCTTCCTGTTGGCATTCGGAAATACCTG
TTATACCTTATTCAGGTGGTATTGGTGGTCGTGATAATCTTGTGGGGAAC
GATATACCAGGAGCTATGGGAGCGAGAGGAAAAACTAATCGCGGTAAAGT
GGGGGACCGCCGGCTTTGAGGAGGCCGAGAAAGACAGGTACAACCGTCCT
CATGATAAGGGTATATATTTTACCGAGAACACTGCCAGATCATACGGTCA
TTCTCTTGAGGATAGTTCGTTCCGCACGTTGGTGCCCCCTTGTATTATAG
CGCACAATCGGGTATTTCAATGAAGTGATGAACGACTGTACCGCGTCAGG
AGCTTTGCATATCAATCCCCCAGCGCTGCTATTGCGTTAATATCCTGTTT
ACTGTGTGGTCACATCTAACTAGCTATTCTACCACATTCAACGTTGAGAG
CGCAAATACGGAGTGCAGCGTATATGCAAGGCGGTGGATCAGCCAGGGGT
TTATCTTCGTTTCAATATCACCCAGACCTGGACACATTGCGCGCTCGAGC
CACAAACCGAAGTCAACTATTTTCGTCCTCTTGTCATAATACAGACCAAA
CTTCGAGGGCGACAAAGATAGCCCTGGGGGAGGGCGGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig31925:1741..2682+

>mRNA_H-paniculata_contig31925.8597.1 ID=mRNA_H-paniculata_contig31925.8597.1|Name=mRNA_H-paniculata_contig31925.8597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig31925:1741..2682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATCCGGATGGGACTACTCGCAGGAATCCGGATGGGACTACTCGCAGGT
GGTATTGGTGGTCGTGATAATCTTGTGGGGAACGATATACCAGGAGCTAT
GGGAGCGAGAGGAAAAACTAATCGCGGTAAAGTGGGGGACCGCCGGCTTT
GAGGAGGCCGAGAAAGACAGGTGGTATTGGTGGTCGTGATAATCTTGTGG
GGAACGATATACCAGGAGCTATGGGAGCGAGAGGAAAAACTAATCGCGGT
AAAGTGGGGGACCGCCGGCTTTGAGGAGGCCGAGAAAGACAGACCAAACT
TCGAGGGCGACAAAGATAGCCCTGGGGGAGGGCGGCGGACCAAACTTCGA
GGGCGACAAAGATAGCCCTGGGGGAGGGCGGCGG
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