mRNA_H-paniculata_contig3191.8595.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3191.8595.1
Unique NamemRNA_H-paniculata_contig3191.8595.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3191.8595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3191contigH-paniculata_contig3191:9638..10153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3191.8595.1prot_H-paniculata_contig3191.8595.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3191 9789..10127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.5552418-UTR-H-paniculata_contig3191:9637..97881622929983.5552418-UTR-H-paniculata_contig3191:9637..9788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3191 9638..9788 +
1691481097.542089-UTR-H-paniculata_contig3191:9637..97881691481097.542089-UTR-H-paniculata_contig3191:9637..9788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3191 9638..9788 +
1622929983.595422-UTR-H-paniculata_contig3191:10127..101531622929983.595422-UTR-H-paniculata_contig3191:10127..10153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3191 10128..10153 +
1691481097.5675888-UTR-H-paniculata_contig3191:10127..101531691481097.5675888-UTR-H-paniculata_contig3191:10127..10153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3191 10128..10153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.57656-CDS-H-paniculata_contig3191:9788..101271622929983.57656-CDS-H-paniculata_contig3191:9788..10127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3191 9789..10127 +
1691481097.5540657-CDS-H-paniculata_contig3191:9788..101271691481097.5540657-CDS-H-paniculata_contig3191:9788..10127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3191 9789..10127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3191.8595.1

>prot_H-paniculata_contig3191.8595.1 ID=prot_H-paniculata_contig3191.8595.1|Name=mRNA_H-paniculata_contig3191.8595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MLLSSFSSSVPSSPPFGFLANVSETSFAALVMEVGVCPFPCTTSSCSDSS
MMMCTSSHWARCSVRIVRYFLPNVCLHHLWSSLPSKLSVNPQILKHSDQI
GWYLVPDLLDPR*
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mRNA from alignment at H-paniculata_contig3191:9638..10153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3191.8595.1 ID=mRNA_H-paniculata_contig3191.8595.1|Name=mRNA_H-paniculata_contig3191.8595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig3191:9638..10153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGACCAACAAAACTTACTTGACGCGGTCCTGTTCCTTCAGCCTATTGG
AATGGCTGCGTGCTGAACGAGCACACGACAACAACCGACCCTATAGTAGT
TCGACATCGGAATCGGAGTCATTTCCCAATTTAATAACATCGAACGCCTC
GATGTTGCTCTCATCGTTCTCGTCGTCCGTGCCTTCGTCCCCGCCCTTCG
GGTTCTTGGCTAACGTCTCTGAAACATCCTTCGCCGCGTTGGTGATGGAG
GTGGGGGTCTGTCCATTTCCCTGTACAACGAGTAGCTGTAGCGACTCCAG
TATGATGATGTGTACATCCTCCCACTGGGCCCGCTGCTCCGTCAGGATCG
TGCGGTACTTCTTGCCGAACGTATGCTTGCACCACTTGTGGTCCTCGCTA
CCGTCGAAGCTGAGCGTGAATCCGCAGATCTTGAAGCACTCCGACCAGAT
CGGCTGGTATTTGGTCCCAGACCTCCTTGACCCACGTTGACACCGCGACC
CTCACGAGGGGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3191:9638..10153+

>mRNA_H-paniculata_contig3191.8595.1 ID=mRNA_H-paniculata_contig3191.8595.1|Name=mRNA_H-paniculata_contig3191.8595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig3191:9638..10153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTCTCATCGTTCTCGTCGTCCGTGCCTTCGTCCCCGCCCTTCGG
GTTCTTGGCTAACGTCTCTGAAACATCCTTCGCCGCGTTGGTGATGGAGG
TGGGGGTCTGTCCATTTCCCTGTACAACGAGTAGCTGTAGCGACTCCAGT
ATGATGATGTGTACATCCTCCCACTGGGCCCGCTGCTCCGTCAGGATCGT
GCGGTACTTCTTGCCGAACGTATGCTTGCACCACTTGTGGTCCTCGCTAC
CGTCGAAGCTGAGCGTGAATCCGCAGATCTTGAAGCACTCCGACCAGATC
GGCTGGTATTTGGTCCCAGACCTCCTTGACCCACGTTGAATGTTGCTCTC
ATCGTTCTCGTCGTCCGTGCCTTCGTCCCCGCCCTTCGGGTTCTTGGCTA
ACGTCTCTGAAACATCCTTCGCCGCGTTGGTGATGGAGGTGGGGGTCTGT
CCATTTCCCTGTACAACGAGTAGCTGTAGCGACTCCAGTATGATGATGTG
TACATCCTCCCACTGGGCCCGCTGCTCCGTCAGGATCGTGCGGTACTTCT
TGCCGAACGTATGCTTGCACCACTTGTGGTCCTCGCTACCGTCGAAGCTG
AGCGTGAATCCGCAGATCTTGAAGCACTCCGACCAGATCGGCTGGTATTT
GGTCCCAGACCTCCTTGACCCACGTTGA
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