mRNA_H-paniculata_contig31853.8581.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31853.8581.1
Unique NamemRNA_H-paniculata_contig31853.8581.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: D7G1X2_ECTSI (Hypothetical inner membrane leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X2_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.630e-53
Identity = 87/123 (70.73%), Postives = 107/123 (86.99%), Query Frame = 1
Query:   31 EKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIF-SDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFSISRYT 396
            E+VLNAGTHG+GF+ +I+G+ LLMTEAS+EGKS EHF+ CA+FS SLMFLYLASTL+H    + + S +LCIADHCAIYILIAGSYTPFMLISMHGSSLG+ VII +W+ ALFGC+FS++ Y+
Sbjct:  244 EEVLNAGTHGVGFVAAIIGAFLLMTEASQEGKSPEHFWGCAIFSASLMFLYLASTLYHSFFMLPYVSGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGRTVIIAQWLCALFGCLFSMTSYS 366          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A835ZJF6_9STRA (Inner membrane leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF6_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.230e-37
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   31 EKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIF-SDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFSIS 387
            E+VLN+ +H LGFIMSI+G+ILLM+EAS   +S   F+ACAVFS SLM LYL+STLFH    +   + IL IADH AIY+LIAGSYTPF++I +HGS++G VV++ EWVAAL G +FSIS
Sbjct:  219 EEVLNSLSHALGFIMSIIGTILLMSEASGPERSPVQFWACAVFSTSLMILYLSSTLFHSFFVVPHVAYILQIADHVAIYLLIAGSYTPFLMIGLHGSTIGGVVVVVEWVAALVGSIFSIS 338          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A192H3Y8_9LACO (Hemolysin III n=3 Tax=Loigolactobacillus TaxID=2767889 RepID=A0A192H3Y8_9LACO)

HSP 1 Score: 110 bits (275), Expect = 2.290e-27
Identity = 58/129 (44.96%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 SPCAPKYITVEKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIFS---DILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMF 378
            SP + +Y+ V +VLNA THG+GF++S++G I L+ +A+  G++     A  ++  +LM LYL+STLFH   S+IF+    +  + DHC+IY+LIAGSYTP+ LI++H ++LG V+    WV A+FG +F
Sbjct:    8 SPFSRRYLIVNEVLNAVTHGIGFVLSVVGLIFLLIKANTIGQTV----AYTIYGITLMILYLSSTLFH---SLIFTRAKSVFQVFDHCSIYLLIAGSYTPYCLIALH-NTLGYVLCAVIWVLAIFGVIF 128          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A6V1P304_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P304_HETAK)

HSP 1 Score: 114 bits (284), Expect = 5.550e-27
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   31 EKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESM-IFSDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFSIS 387
            E+VLNA +H +GF+ + +G+  L+ EA   G SA H +ACA++S  LMFLY++STL+H    + + + IL I DHCAIY LIAG+Y+P M+I +  S    VV+I EW+    GC+FSIS
Sbjct:  230 EEVLNAMSHAIGFVAAAIGAATLLGEAYATG-SARHIWACAIYSSCLMFLYISSTLYHSFFMLPLTNKILKICDHCAIYTLIAGTYSPLMMIGLRHSPTAVVVVIMEWLLCFLGCVFSIS 348          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: K8YVT8_NANGC (Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVT8_NANGC)

HSP 1 Score: 113 bits (282), Expect = 1.990e-26
Identity = 60/136 (44.12%), Postives = 91/136 (66.91%), Query Frame = 1
Query:   10 APKYITV-EKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIFS-DILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFSISRYTYTNSN 411
            APK   V E++LN+ THGLGFI S++G++LLM+ AS  G +  H+++C +FS SLM LY++S+L+H    +  + D+L I DH  IY+LIAGSY+P M+I++H S    ++++ EW+ A  G   SI+      SN
Sbjct:  293 APKCNYVFEEILNSLTHGLGFIASVVGTLLLMSAASAPGTTPYHWWSCLLFSLSLMMLYISSSLYHSFFMLPHAKDVLQILDHVGIYLLIAGSYSPIMMIALHHSHRANLLLLLEWLTAFGGICVSIASSGVGVSN 428          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A7S3MG12_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG12_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.180e-24
Identity = 50/118 (42.37%), Postives = 84/118 (71.19%), Query Frame = 1
Query:   31 EKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRR-ESMIFSDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFS 381
            E++LN+ +HGL F+ +++G+ +L+++A+    S+ HF+AC ++SF+LMFL+L+S LFH    S     +L + DH  IY++IAGS TPFML+++H  +  +V+I  EW+AA  G +F+
Sbjct:  213 EEILNSVSHGLAFLGAVVGANILISDAADVQGSSYHFWACVIYSFALMFLFLSSCLFHSFFMSPTTMRVLQVLDHVGIYLVIAGSMTPFMLVALHHHTAARVLICGEWIAAFLGSVFA 330          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: C5BAS8_EDWI9 (Channel forming cytolysin, putative n=11 Tax=Hafniaceae TaxID=1903412 RepID=C5BAS8_EDWI9)

HSP 1 Score: 100 bits (250), Expect = 1.300e-23
Identity = 51/129 (39.53%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    1 SPCAPKYITVEKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIFSDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFSIS 387
            SP  P Y   E+V N+ +HG+GFI+ I+G +LL+ +A   G SA    + +++  S++ L+LASTL+H   +      L + DHCAIY+LIAG+YTPF+L+ +  S L + ++   W+ AL G +F ++
Sbjct:    6 SPLQPGYSLTEEVANSISHGIGFILGIVGLVLLLLQAIGNGASAMAITSYSLYGGSMVLLFLASTLYHAIPNRAAKRWLKVFDHCAIYLLIAGTYTPFLLVGLD-SPLARGLMAVIWILALLGILFKLA 133          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A0R1KA36_9LACO (Hemolysin III n=3 Tax=Companilactobacillus TaxID=2767879 RepID=A0A0R1KA36_9LACO)

HSP 1 Score: 100 bits (250), Expect = 1.300e-23
Identity = 45/134 (33.58%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   16 KYITVEKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIFSDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCM---FSISRYTYTNS 408
            +YI   ++ +A THG+G I++I+G++ L+ +  ++G   E   A  +++F+L FLYL+STLFH         +  I DH +I+++IAG+YTP+ L+++ GS+ G +++ T W+ A+ G +   F++ ++ Y  +
Sbjct:   11 RYIITNEIFSAVTHGIGIILAIIGAVFLLIKGFKQGDPLE-ITAYFIYAFTLFFLYLSSTLFHSLYFTKAKGVFQIFDHSSIFLMIAGTYTPYCLVALRGSAFGIIILSTIWILAILGILYKIFNVGKFKYLET 143          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A1P8Q528_9LACO (Hemolysin III n=4 Tax=Companilactobacillus TaxID=2767879 RepID=A0A1P8Q528_9LACO)

HSP 1 Score: 100 bits (249), Expect = 1.960e-23
Identity = 48/131 (36.64%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   16 KYITVEKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIFSDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCM---FSISRYTY 399
            +YI   ++ +A THG+G I++++GS+ L+ +    G   E   A  +++F+L FLYL+STLFH         +  I DH +I+++IAG+YTPF LI++ GS+ G +++   WV A+FG +   F++ R+ +
Sbjct:   13 RYIIKNEIFSAITHGIGIILAVIGSVFLLIKGFNNGDPLE-ITAYFIYAFTLFFLYLSSTLFHSLYFTKAKHVFQIFDHSSIFLMIAGTYTPFCLIALRGSAFGIIILSVIWVLAIFGILWKIFNVGRFKF 142          
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Match: A0A376D7B1_9GAMM (Hemolysin n=7 Tax=Edwardsiella TaxID=635 RepID=A0A376D7B1_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 2.520e-23
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 SPCAPKYITVEKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYACAVFSFSLMFLYLASTLFHRRESMIFSDILCIADHCAIYILIAGSYTPFMLISMHGSSLGQVVIITEWVAALFGCMFSIS 387
            SP  P Y   E+V N+ +HG+GFI+ I+G +LL+T A   G +A    + +++  S++ L+LASTL+H          L I DHCAIY+LIAG+YTPF+L+ +  S L + +++  W  AL G +F ++
Sbjct:    5 SPPLPSYSLAEEVANSISHGIGFILGIVGLVLLLTHAIDSGANATAITSYSLYGGSMILLFLASTLYHAIPHPAAKRWLKIVDHCAIYLLIAGTYTPFLLVGLD-SPLARGLMVVIWSLALAGIIFKLA 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31853.8581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1X2_ECTSI3.630e-5370.73Hypothetical inner membrane leucine rich repeat pr... [more]
A0A835ZJF6_9STRA3.230e-3762.50Inner membrane leucine rich repeat protein n=1 Tax... [more]
A0A192H3Y8_9LACO2.290e-2744.96Hemolysin III n=3 Tax=Loigolactobacillus TaxID=276... [more]
A0A6V1P304_HETAK5.550e-2748.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8YVT8_NANGC1.990e-2644.12Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S3MG12_9STRA3.180e-2442.37Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
C5BAS8_EDWI91.300e-2339.53Channel forming cytolysin, putative n=11 Tax=Hafni... [more]
A0A0R1KA36_9LACO1.300e-2333.58Hemolysin III n=3 Tax=Companilactobacillus TaxID=2... [more]
A0A1P8Q528_9LACO1.960e-2336.64Hemolysin III n=4 Tax=Companilactobacillus TaxID=2... [more]
A0A376D7B1_9GAMM2.520e-2340.31Hemolysin n=7 Tax=Edwardsiella TaxID=635 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31853contigH-paniculata_contig31853:675..1859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue4e-43
Seed eggNOG ortholog2880.D7G1X2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haemolysin-III related
EggNOG OGs2D5AR@1,2SXY1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.9177697-CDS-H-paniculata_contig31853:674..8941622929981.9177697-CDS-H-paniculata_contig31853:674..894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31853 675..894 -
1691481096.7401714-CDS-H-paniculata_contig31853:674..8941691481096.7401714-CDS-H-paniculata_contig31853:674..894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31853 675..894 -
1622929981.9332798-CDS-H-paniculata_contig31853:1629..18591622929981.9332798-CDS-H-paniculata_contig31853:1629..1859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31853 1630..1859 -
1691481096.7550924-CDS-H-paniculata_contig31853:1629..18591691481096.7550924-CDS-H-paniculata_contig31853:1629..1859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31853 1630..1859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31853.8581.1prot_H-paniculata_contig31853.8581.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31853 675..1859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31853.8581.1

>prot_H-paniculata_contig31853.8581.1 ID=prot_H-paniculata_contig31853.8581.1|Name=mRNA_H-paniculata_contig31853.8581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
SPCAPKYITVEKVLNAGTHGLGFIMSILGSILLMTEASREGKSAEHFYAC
AVFSFSLMFLYLASTLFHRRESMIFSDILCIADHCAIYILIAGSYTPFML
ISMHGSSLGQVVIITEWVAALFGCMFSISRYTYTNSNVGQAICVLIVII*
back to top

mRNA from alignment at H-paniculata_contig31853:675..1859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31853.8581.1 ID=mRNA_H-paniculata_contig31853.8581.1|Name=mRNA_H-paniculata_contig31853.8581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-paniculata_contig31853:675..1859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCGTGCGCGCCTAAATATATAACCGTCGAGAAGGTGTTGAACGCCGG GACTCACGGACTGGGGTTCATCATGTCGATCCTAGGGAGCATTCTGTTGA TGACGGAGGCATCACGGGAGGGTAAAAGCGCGGAGCACTTCTATGCGTGT GCCGTGTTTTCTTTCAGCCTTATGTTTCTCTACCTGGCGTCTACCCTGTT CCACAGGCGAGAGAGTATGATATTCTCCGAGTATATATATATATATATAT AGAGAGAGAGAGAGAGAATGACGAAACTATAGGCGGGTGTACTCTAGATG ATGATGATGGAGTGACTCCCTCTGTTTGAGGCGTCCCTCGATAGCGGGGG GGCGGTATTATTGACTTTTGGAACATGACATGACATTTTTGACATTCTAG ACAGACTGTTTTACTGTTTGATGGTTGGACTAGAGCTACTGTAGACAGCT CCAAATGACTAAGGGTCCTTTCCCCCCAAATGCGAGAGAGCTCTAGTTAA CCAGAGATTGTTAATTCTTTCGTCCAAACACGGCTAGTTCGCCTTTATAT GGCACCTCCCGTCATTCGCATTGCTCGTCCATGTTCGTTTTTTTTTTTTT TTCTGTCACTTTTGTAATATTCTCCTTAACGTAAGTATTGGGCTCTTTTT TATAAGGCAGGACGCATAAGTCACTACAGTCACTTGATTCTAGTATGCTA AGTGGTGGGCTCGATTCTAGCCTAGATGGAGTTTTTGCTGTTTTCTCTGG CGGGACATTACAGTCAGCAGAGTAGCTGCCTGAAATCGGGTAGGTCCACT GCTGTACCTTTTTTCTCCTCTTCCATTCCTCTTTTTTTTTTTTAATATAT TAATATATATATTTCTCACTTTGTCTGTTTCTCCTCCTTTTTTTTTGTGT GTTGTACTGTTTGTTGTTGTGGTGATGGTGGTGTGCAGTTTCTTCATGCT CCCGTACGTGAGCAGCATCTTGTGCATCGCTGACCACTGCGCCATCTACA TCCTCATCGCCGGTAGCTACACCCCATTCATGCTCATCTCCATGCACGGG TCCAGCCTCGGGCAGGTGGTGATCATCACCGAGTGGGTAGCGGCTCTGTT CGGCTGCATGTTCAGTATCTCAAGGTATACATACACTAATAGTAATGTAG GACAAGCTATATGTGTCCTTATTGTCATTATTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31853:675..1859-

>mRNA_H-paniculata_contig31853.8581.1 ID=mRNA_H-paniculata_contig31853.8581.1|Name=mRNA_H-paniculata_contig31853.8581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig31853:675..1859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCGTGCGCGCCTAAATATATAACCGTCGAGAAGGTGTTGAACGCCGG
GACTCACGGACTGGGGTTCATCATGTCGATCCTAGGGAGCATTCTGTTGA
TGACGGAGGCATCACGGGAGGGTAAAAGCGCGGAGCACTTCTATGCGTGT
GCCGTGTTTTCTTTCAGCCTTATGTTTCTCTACCTGGCGTCTACCCTGTT
CCACAGGCGAGAGAGTATGATATTCTCCGATCTCCGTGCGCGCCTAAATA
TATAACCGTCGAGAAGGTGTTGAACGCCGGGACTCACGGACTGGGGTTCA
TCATGTCGATCCTAGGGAGCATTCTGTTGATGACGGAGGCATCACGGGAG
GGTAAAAGCGCGGAGCACTTCTATGCGTGTGCCGTGTTTTCTTTCAGCCT
TATGTTTCTCTACCTGGCGTCTACCCTGTTCCACAGGCGAGAGAGTATGA
TATTCTCCGACATCTTGTGCATCGCTGACCACTGCGCCATCTACATCCTC
ATCGCCGGTAGCTACACCCCATTCATGCTCATCTCCATGCACGGGTCCAG
CCTCGGGCAGGTGGTGATCATCACCGAGTGGGTAGCGGCTCTGTTCGGCT
GCATGTTCAGTATCTCAAGGTATACATACACTAATAGTAATGTAGGACAA
GCTATATGTGTCCTTATTGTCATTATTTAACATCTTGTGCATCGCTGACC
ACTGCGCCATCTACATCCTCATCGCCGGTAGCTACACCCCATTCATGCTC
ATCTCCATGCACGGGTCCAGCCTCGGGCAGGTGGTGATCATCACCGAGTG
GGTAGCGGCTCTGTTCGGCTGCATGTTCAGTATCTCAAGGTATACATACA
CTAATAGTAATGTAGGACAAGCTATATGTGTCCTTATTGTCATTATTTAA
back to top