mRNA_H-paniculata_contig3183.8574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3183.8574.1
Unique NamemRNA_H-paniculata_contig3183.8574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: A0A6H5KYT8_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYT8_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.030e-74
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL D ER K N G D  FYG PRICYHVD GFL HLT+LYRERIPAGGAVLD+MSSWVSHLPPEV YERVDGHGMN+EEL +NPRLDTKRVWDLNA+PRLPF+D+ YDAVVC VSVQYLQQPE VFAD+ RVL+
Sbjct:   70 VLNDGERTKLNDGPDGLFYGYPRICYHVDEGFLKHLTELYRERIPAGGAVLDMMSSWVSHLPPEVTYERVDGHGMNLEELGRNPRLDTKRVWDLNAEPRLPFEDATYDAVVCTVSVQYLQQPEAVFADVCRVLK 203
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: A0A835YM46_9STRA (Methyltransferase type 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM46_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.540e-55
Identity = 83/134 (61.94%), Postives = 101/134 (75.37%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL +++R K +   D ++Y  PR+ +HVD  F   LTDLYRERIPAGG VLD+MSSWVSHLP +V Y +VDGHG+N EEL +NP+L   RV DLNADP LPF    YDAVVC VSVQYLQQPE++F D+ RVL+
Sbjct:   14 VLSESDRRKYDTAPDAYWYNTPRLVFHVDSSFTSKLTDLYRERIPAGGTVLDMMSSWVSHLPSDVRYAQVDGHGLNREELQRNPQLTDIRVQDLNADPYLPFDSEQYDAVVCAVSVQYLQQPERIFGDVYRVLK 147
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: A0A7S3XX00_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX00_HETAK)

HSP 1 Score: 170 bits (431), Expect = 1.630e-50
Identity = 80/134 (59.70%), Postives = 100/134 (74.63%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL++ ER K +   D FFY  P++CYHVD  F+  LT LY ER+P GG VLD+MSSWVSHLP +  YE V GHG+N EEL +NPRLD  +V +LN + +LPF+ + YDAV C VSVQYLQQPE+VFA++ RVLR
Sbjct:   71 VLQENERKKMDETNDAFFYDYPKLCYHVDTNFVDALTALYAERLPRGGRVLDLMSSWVSHLPGDARYETVHGHGLNREELARNPRLDLFKVQNLNENQQLPFESNFYDAVTCAVSVQYLQQPEKVFAEVGRVLR 204
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: A0A0D3CNC6_BRAOL (Methyltransf_11 domain-containing protein n=7 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CNC6_BRAOL)

HSP 1 Score: 166 bits (421), Expect = 7.760e-49
Identity = 81/134 (60.45%), Postives = 97/134 (72.39%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL +  R K N G D+ FY  PR   HVD GF+  LTDLYR R+ +G  VLD+MSSWVSHLP EV YERV GHG+N +EL +NPRLD   V DLN D +L FQD  +DAV+C V VQYLQQPE+VFA++ RVL+
Sbjct:   50 VLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYERVVGHGLNAQELARNPRLDYFFVKDLNEDQKLEFQDKYFDAVLCSVGVQYLQQPEKVFAEVYRVLK 183
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: H9X9L0_PINTA (Methyltransf_11 domain-containing protein (Fragment) n=3 Tax=Pinus taeda TaxID=3352 RepID=H9X9L0_PINTA)

HSP 1 Score: 162 bits (410), Expect = 8.410e-49
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL +  R K N+ +D+ FY  PR   HVD  F+  LT LYRERIP G  VLD+MSSWVSHLPPE+ Y+RV GHG+N +EL +NPRLD   V DLN D  L  +D ++DAV+C V  QYLQQPE+VFA+I R+LR
Sbjct:   12 VLNNDSRQKLNMSSDRDFYSSPRFVNHVDDSFISALTQLYRERIPPGAEVLDLMSSWVSHLPPEIQYKRVVGHGLNAQELARNPRLDYFFVKDLNEDQTLEAKDCSFDAVLCAVGAQYLQQPEKVFAEIYRILR 145
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: A0A835WG84_9CHLO (Methyltransf_11 domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WG84_9CHLO)

HSP 1 Score: 166 bits (421), Expect = 1.230e-48
Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPR-LPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL   ER K + G D+ FY +PR+  HVD GFL  +T+LYR+RIP GGAVLD+ SSWVSHLPPEV Y +V GHGMN  EL +NPRLD+  V +LN +P      D ++DAVVCCVSVQY+QQPE+VFA++ RVL+
Sbjct:   61 VLTGPERTKLDTGDDRGFYDVPRLVKHVDDGFLDQVTELYRQRIPEGGAVLDLCSSWVSHLPPEVTYSKVVGHGMNAAELARNPRLDSFFVRNLNTNPDGWAAADQSFDAVVCCVSVQYMQQPEKVFAEVYRVLK 195
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: D8QPM9_SELML (Methyltransf_11 domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPM9_SELML)

HSP 1 Score: 165 bits (417), Expect = 2.060e-48
Identity = 82/135 (60.74%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLP-FQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL D  R K N+  D+ FY  PR+  HVD GF+  LTD+YR+RIPAG  VLD+MSSWVSHLPPE  Y+RV GHG+N +EL KN RLD   V DLN DP L      ++DAVVC VSVQYL+QPE++FA+I RVLR
Sbjct:   39 VLTDRNRTKLNIAPDRDFYAFPRLVTHVDDGFIRELTDVYRQRIPAGSEVLDLMSSWVSHLPPEFSYKRVVGHGLNAQELLKNKRLDDFFVKDLNRDPSLSGIAAESFDAVVCAVSVQYLEQPEKIFAEILRVLR 173
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: A0A250WZI7_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZI7_9CHLO)

HSP 1 Score: 165 bits (417), Expect = 2.710e-48
Identity = 81/135 (60.00%), Postives = 99/135 (73.33%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPR-LPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL   +RMK +   D+FFY  PR+  HVD GF+  +T+LYR+RIPAGGAVLD+ SSWVSHLPPEV Y +V GHGMN  EL +N RLD+  V +LN +P      D  YDAV+CCVSVQYLQQPE+VF +I RVL+
Sbjct:   46 VLSKPQRMKIDETEDRFFYDYPRLVKHVDDGFIAQVTELYRQRIPAGGAVLDLCSSWVSHLPPEVEYSKVVGHGMNAAELARNERLDSFFVRNLNREPDGWAVADCTYDAVICCVSVQYLQQPERVFQEIHRVLK 180
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: C1EFC3_MICCC (Methyltransf_11 domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EFC3_MICCC)

HSP 1 Score: 163 bits (413), Expect = 3.230e-48
Identity = 79/134 (58.96%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL  ++R K N   D+ +Y  PR+C HVD  FL  LT LYRERIPAGG VLD+ SSW+SHLPPEV Y  V GHG+N EEL KN RL    V +LN +P    +D  YDAV+CCVSVQYLQ+PE+VFA++ RVL+
Sbjct:    6 VLDRSQRTKINTVDDRNWYSQPRLCTHVDDEFLAQLTQLYRERIPAGGKVLDMCSSWISHLPPEVEYSEVVGHGLNAEELGKNRRLSRFFVKNLNENPTFAAEDQTYDAVLCCVSVQYLQRPEEVFAEVYRVLK 139
[Close]
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Match: D8UCG0_VOLCA (Methyltransf_11 domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UCG0_VOLCA)

HSP 1 Score: 163 bits (412), Expect = 5.000e-48
Identity = 82/135 (60.74%), Postives = 96/135 (71.11%), Query Frame = 1 
Query:    1 VLKDAERMKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSWVSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPR-LPFQDSAYDAVVCCVSVQYLQQPEQVFADIRRVLR 402
            VL   ER K + G D  FY +PR   HVD  FL  +T+LYR+RIP G AVLD+ SSWVSHLPPEV Y +V GHGMN  EL +NPRL    V DLN +P   P +D + DAVVCCVSVQYLQQPE+VFA+I RVL+
Sbjct:    7 VLSRPERTKLDGGDDLAFYDVPRFVKHVDADFLDKVTELYRQRIPEGAAVLDLCSSWVSHLPPEVYYSKVVGHGMNPSELARNPRLTAAFVRDLNKEPEGWPLEDRSLDAVVCCVSVQYLQQPERVFAEIYRVLK 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3183.8574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYT8_9PHAE1.030e-7480.60Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A835YM46_9STRA7.540e-5561.94Methyltransferase type 11 n=1 Tax=Tribonema minus ... [more]
A0A7S3XX00_HETAK1.630e-5059.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0D3CNC6_BRAOL7.760e-4960.45Methyltransf_11 domain-containing protein n=7 Tax=... [more]
H9X9L0_PINTA8.410e-4958.21Methyltransf_11 domain-containing protein (Fragmen... [more]
A0A835WG84_9CHLO1.230e-4860.00Methyltransf_11 domain-containing protein n=2 Tax=... [more]
D8QPM9_SELML2.060e-4860.74Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A250WZI7_9CHLO2.710e-4860.00Methyltransf_11 domain-containing protein n=1 Tax=... [more]
C1EFC3_MICCC3.230e-4858.96Methyltransf_11 domain-containing protein n=2 Tax=... [more]
D8UCG0_VOLCA5.000e-4860.74Methyltransf_11 domain-containing protein (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3183contigH-paniculata_contig3183:15261..18696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue5.5e-57
Seed eggNOG ortholog2880.D8LJL7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sterol 24-C-methyltransferase activity
EggNOG OGsCOG0500@1,KOG1269@2759
Ec32 ortholog descriptionSAM-dependent methyltransferases
Ec32 orthologEc-17_002490.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size405
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3183.8574.1prot_H-paniculata_contig3183.8574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3183 15282..18696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.0480697-UTR-H-paniculata_contig3183:15260..152811622929981.0480697-UTR-H-paniculata_contig3183:15260..15281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3183 15261..15281 +
1691481096.2759445-UTR-H-paniculata_contig3183:15260..152811691481096.2759445-UTR-H-paniculata_contig3183:15260..15281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3183 15261..15281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.0707667-CDS-H-paniculata_contig3183:15281..153821622929981.0707667-CDS-H-paniculata_contig3183:15281..15382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 15282..15382 +
1691481096.286283-CDS-H-paniculata_contig3183:15281..153821691481096.286283-CDS-H-paniculata_contig3183:15281..15382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 15282..15382 +
1622929981.0921679-CDS-H-paniculata_contig3183:15735..158051622929981.0921679-CDS-H-paniculata_contig3183:15735..15805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 15736..15805 +
1691481096.2947106-CDS-H-paniculata_contig3183:15735..158051691481096.2947106-CDS-H-paniculata_contig3183:15735..15805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 15736..15805 +
1622929981.1137729-CDS-H-paniculata_contig3183:17692..177701622929981.1137729-CDS-H-paniculata_contig3183:17692..17770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 17693..17770 +
1691481096.3036065-CDS-H-paniculata_contig3183:17692..177701691481096.3036065-CDS-H-paniculata_contig3183:17692..17770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 17693..17770 +
1622929981.131445-CDS-H-paniculata_contig3183:18561..186961622929981.131445-CDS-H-paniculata_contig3183:18561..18696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 18562..18696 +
1691481096.3127284-CDS-H-paniculata_contig3183:18561..186961691481096.3127284-CDS-H-paniculata_contig3183:18561..18696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 18562..18696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3183.8574.1

>prot_H-paniculata_contig3183.8574.1 ID=prot_H-paniculata_contig3183.8574.1|Name=mRNA_H-paniculata_contig3183.8574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MKNNVGADKFFYGIPRICYHVDMGFLGHLTDLYRERIPAGGAVLDIMSSW
VSHLPPEVVYERVDGHGMNMEELNKNPRLDTKRVWDLNADPRLPFQDSAY
DAVVCCVSVQYLQQPEQVFADIRRVLR*
back to top

mRNA from alignment at H-paniculata_contig3183:15261..18696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3183.8574.1 ID=mRNA_H-paniculata_contig3183.8574.1|Name=mRNA_H-paniculata_contig3183.8574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3436bp|location=Sequence derived from alignment at H-paniculata_contig3183:15261..18696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGAAGGACGCGGAGCGGATGAAGAACAACGTCGGGGCCGACAAGTT
CTTCTACGGCATCCCGCGCATCTGCTACCACGTCGATATGGGTTTTCTCG
GCCACCTTACGGACTTATACCGGTCAGTGGAGTTAGAATTGACCCCGCAC
TTTGCAGGTGTATTACGAAAAATGTCACCCCATGGTGGCGACTTTATCAA
AAATCTATTTTCTATTAAAAACAGAATGTGACAGATCGCCAGGCGAATGA
ACAGTTTGCCCAGAGTTCGTGCGTAGCGATGTGTGTCTTCTTCTCTTTGT
CATGGTTCATTACTGCATCATGCTTCATGTCTGGTCATTCCATACACGTG
AGTGATATAGTTGTATTCCTGTTCGATTGCAGTAGGTAGTCAACGTGCTG
TTTCCGTTCCAAGCGATCCTATGACGGGTACCCAGTACCCCGCACGATGA
ACACCTCCCCATACCTGCGCGGCAGGGAACGTATTCCAGCGGGTGGTGCA
GTTCTCGACATAATGTCATCTTGGGTCAGCCACCTTCCCCCCGAGGTGAG
CGTCGCCGTATAGACATGTGCGTGCTCGGTTTGAGAAAGGCCAGAAAAAA
ACGCATGCCTTGGTGTACAGCATGTAACGAACACGTTGGATGTAGCGGTC
TTTGTGGCTCGATGTTCTCAATAAGTACGATGACTATCGTATTGCCTTGG
CACATGAACGTTGTGTTGAATTGAAAGGCCTCGTGAGGTCTGTGCGTGTC
CGATGGACGGACCTCTTTCGAAGGTGTGGGGGCTACCTTATTGAAAACGT
TTCGGGGTTCGGAGAACGTTGTTTTATCTTTCCTACGTATTTTAAGACCG
CAGTATAGTCGATTAGTTCGCACCGAAGAGCTAGACCTGACTAAAGTAGG
TAACAACGAGCCCGAGGGACCCCCAAGAATCTGACGTCGGCCGAACTTGA
CCCGCTGAAAGCGTGTCTCGCACGACCGAGCGAGAACCAACCCACACATT
CACAATGGCCGAATCAGAATTAGCTCTTGTTTTTGGCTGAATATGTGCTG
CTTTTCGTCAAGACTGCTCAACAAATGTCCGAGGGCTGTCTCTACCAGTA
GGTACACATCCGAAATGCTTTTATGCCTATCACTGCCGTGCTTCTGCTTA
CGTGGCCCAGCTACGTAAGATCGCCCCAACATGTTACATACAATGTGACG
AACAGCTCTAAGTTTCGCTAAAAACAAAAAGAAATATTAGCTGGTTGTTG
TGGTCGTGTGGACAGCACGTTCATCACGCTCTTGGGATTCCTGAACCCCT
GTCACCTACACAGCATCTGCTGGCATTCATTTGCCACCCTCCGAACGGCC
TTCCGCTGCTTTTAACCCTGGATGACGAACTCGTCTTTGTACAACACAGA
GTACTCGTAACCATGTGCGTGATGTGCACTACGTCCCAAAACTTGAATTT
TACGACCAATCCGCAGTGTCGTTCCCTCGAGAACCAGTTCCTATATATCG
TGTTGGCGCCGTACTCTCATTTGGTGTCGCCGGTAGGAATCTGTTTGCAA
CCTGTGTCGTAATGTTCTGAGGACATGCTTTAGCGTGCAAATCGTAAACA
TCTTCCCACCTCCGTGCCCCCTCAAAACGAACGCGATAGCGATTGTTGGG
GATAGAAAACTTTGCTGACAGGGAGGACTATCGTGGATGGGATAAGAGGT
ACACATTCTTGAGCCACCTTCGAAAAGGAAGCGACTGGCCGTCGGAGGTT
GCTCTCATAGGAACGAGTTGCCGTCCTCTCGATGATGCGTTCGGTGGTCA
ATGGCCTAACCACAAGGCGCGTAAAGTATGAGTACCCCCTCCTCTCGCCC
AGTTTGATCAGTATGTGGATAATAACATAATTAAATAGTAATCCAGCAGC
TTGAAGATGCTAAGCACGCCTCCATGTGGGGGGTAAGGAGAGAAAGAAAG
ACAGAGACAAAGACAAAGACAAAGACAAAGACAAAGAGAGAGACAGAGAG
AGAGACCCCCGCTCCATATCTCCCTTCTAGTTACCACCTTTTTAATCCCC
TCCGTATACTTATCTCGTTCGTGGGTTCGATGATCGATTGGTATGTGACA
AACGATGGGGGGGGTTGTCGGCCCAAATACTCGGGATTAACCTGTCGCAT
GTACATATTCGTGCCTATGAGAGAATAACAGTATTCTGTATACTAACGCG
AATAACGGAGCTACGGTGAGCGCAGTGAGTCCGTGTGCGTAAGTCTCATC
GAAGACAGAATACGTACTGTACGAGTTTAGCCGCGGCGCTCTTACTAGTG
CGTGTTGAAGCGCCCCAAGGCGAGAGGTTTTGTCGCGAGCACCAGCTGAA
TATGATTTGTAGTAGGTTGGAATCATGAAAGCGAGAAAATATCCATATTC
AACGGCGTTATTGGTTGTGTCTGTGCATCCAGGTTGTGTACGAACGTGTG
GACGGGCACGGCATGAACATGGAAGAGCTCAACAAGAATCCTCGGCTGGA
CACTAAGAGGGTGAGACCCCAATTAAGAAAGAGGAGAAGGGAGGGGAGGC
GTTCTCATGGTTCGCATGCCTTAACTGCTAGACCATTGACCACCAAGCGC
GTCCTCGAGTCGAGGTGACGAGGCTTCGTTCCTGCAAGAGCAACCTGCGG
TAGCCAATGGCTCCTTGCTACCATGCCAGACGTGACTCAGAAAGGTTTCA
TTTACCCCCTAGTAGTGGAGCCACGGCTATGGCCACGCAGTTGGTGCTTT
TCCTCGGCCCACGGACTCGCTGCACTCGTATGGAGATCCGTTTTTCAGGA
CGTTTTTGCCGACAGAGTTGAAATACTGTGGACGGACCATAACCCAAACG
GGTAGGATAACCCATGTACTGGGCGAATCTAGAGGGCATCCGAAGGGTTG
TAATGCGTACGGGTATCATTCATTCTTGACGCAAGTCCCACATTGCCTGT
GCGTTTGGTAGCGGTACATGGGCGCCTAAGTTGCGAGTAATTCCCTCCAA
CGCCCCAATCTGTAGAGATCCGGATATCGGGTAACATATGATGAAAACAT
CGTCATTGAACCGGCGTACGAGAGCTGCGACTTAAACCGTCCATTATATG
TATCAGAAAAGGCTATTTTCATGTGATAAACTCAAAACACCTATCTTAAA
ATGAAAAACCGCCTTATAATATGATCGCATTGTCATATAAGGAAAAGTGT
GCCGGATTAGTTTTTGTGACAAGCCAAGTTAACCCGCGGTCAATCTAATA
GCACCTTGGTAATGACTGCCTTAAATGCTGATACCCATTATATATCGATA
GGTGTGGGATTTGAACGCCGACCCCCGCCTACCGTTCCAAGACTCGGCGT
ACGACGCCGTAGTGTGCTGCGTGTCGGTGCAGTACCTGCAGCAGCCGGAG
CAGGTTTTCGCAGATATACGTAGGGTGCTGAGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3183:15261..18696+

>mRNA_H-paniculata_contig3183.8574.1 ID=mRNA_H-paniculata_contig3183.8574.1|Name=mRNA_H-paniculata_contig3183.8574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig3183:15261..18696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAACAACGTCGGGGCCGACAAGTTCTTCTACGGCATCCCGCGCAT
CTGCTACCACGTCGATATGGGTTTTCTCGGCCACCTTACGGACTTATACC
GATGAAGAACAACGTCGGGGCCGACAAGTTCTTCTACGGCATCCCGCGCA
TCTGCTACCACGTCGATATGGGTTTTCTCGGCCACCTTACGGACTTATAC
CGGGAACGTATTCCAGCGGGTGGTGCAGTTCTCGACATAATGTCATCTTG
GGTCAGCCACCTTCCCCCCGAGGGAACGTATTCCAGCGGGTGGTGCAGTT
CTCGACATAATGTCATCTTGGGTCAGCCACCTTCCCCCCGAGGTTGTGTA
CGAACGTGTGGACGGGCACGGCATGAACATGGAAGAGCTCAACAAGAATC
CTCGGCTGGACACTAAGAGGGTTGTGTACGAACGTGTGGACGGGCACGGC
ATGAACATGGAAGAGCTCAACAAGAATCCTCGGCTGGACACTAAGAGGGT
GTGGGATTTGAACGCCGACCCCCGCCTACCGTTCCAAGACTCGGCGTACG
ACGCCGTAGTGTGCTGCGTGTCGGTGCAGTACCTGCAGCAGCCGGAGCAG
GTTTTCGCAGATATACGTAGGGTGCTGAGGTGAGTGTGGGATTTGAACGC
CGACCCCCGCCTACCGTTCCAAGACTCGGCGTACGACGCCGTAGTGTGCT
GCGTGTCGGTGCAGTACCTGCAGCAGCCGGAGCAGGTTTTCGCAGATATA
CGTAGGGTGCTGAGGTGA
back to top