mRNA_H-paniculata_contig31799.8564.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31799.8564.1
Unique NamemRNA_H-paniculata_contig31799.8564.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.110e-54
Identity = 81/132 (61.36%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   13 QILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            Q+L +LQ+LGRGNCFDD+ Q SLMS+  A   FHKFC+HFA EL+ E+I+LP G   +++M  YD+LG TGA+GSTDV HI W  CP +  R+YTG++GF TIAYQ TVDH+GRA+A T GF GATNDK+I+
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIM 134          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.560e-52
Identity = 83/134 (61.94%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    7 SYQILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            S +IL +LQ+LGRGNCFDD+ Q SLMS+  A   FHKFC+HFA EL+ E+I+LP G   +++M  YD+LG TGA+GSTDV HI W  CP +  R+YTG++GF TIAYQ TVDH+GRA+A T GF GATNDK+II
Sbjct:  248 STKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTII 381          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 7.120e-49
Identity = 78/126 (61.90%), Postives = 96/126 (76.19%), Query Frame = 1
Query:   31 QVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            QVLG+GNCFDDV Q S MS+S AQ  FHKFC HFA E++ E+I+LP G  L+++M  + QLG+TGA GSTDV HI W+ CP +  R++TG++GF TIAY  TVDH GR LA T GF GATNDK+II
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTII 167          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.190e-48
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = 1
Query:   10 YQILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQA--LEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            +++LA L +LGRGNCF  + Q S MS  T Q MFHKFC HFA E+Y E I LP  ++  L+ +M +YD+LGFTGAVGS DV HI W  CP + AR+YTG++GF TIAYQ TVDH+GRA+A T+GF G+TNDK+I+
Sbjct:   84 HKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIV 218          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 5.510e-48
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:   13 QILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKG 375
            Q+L +LQ LGRGNCFDD+ Q SLMS+  A   FHKFC+HFA EL+ E+I+LP G   +++M  YD+LG TGA+GSTDV HI W  CP +  R+YTG++GF TIAYQ TVDH+GRA+A T G
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG 123          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.310e-47
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    4 PSYQILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            P  Q+LA LQ+L RGN F D+   S +S  T    FH+FC++FA ELY E ++LP G+ L K+M +YD++GF GAVGSTDV HI W  CP + AR YTG++G  T+A+Q TVDHSGR LA T+GF GATNDK+II
Sbjct:   80 PHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTII 214          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.780e-46
Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   28 LQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            L+VLG+GNCFDDV Q S MSES AQ +FHKFC H A E++ E+I+LP G  L+++M  + QLG TGA GSTDV HI  + CP +  R++TG++GF TIAY+ TVDH+GRALA T GF G TNDK+ I
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTI 263          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 6.260e-46
Identity = 75/132 (56.82%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   13 QILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            ++LA LQ+L RGNCF D+   S +S  TA   FH+F  +FA E+Y E+IFLP G   +K+M +YD+LGF+GA GSTDV HI W  CP + AR+YTG++G+ T+AYQ TVDH+ R LA T GF G+TNDKSII
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSII 289          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.130e-45
Identity = 75/132 (56.82%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   13 QILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            ++LA LQ+L RGN F D+   S +S  T    FH+FC++FA ELY E ++LP G+ L K+M +YD++GF GAVGSTDV HI W  CP + AR YTG++G  T+A+Q TVDHSGR LA T+GF GATNDK+II
Sbjct:  174 KVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTII 305          
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.120e-45
Identity = 73/135 (54.07%), Postives = 100/135 (74.07%), Query Frame = 1
Query:   10 YQILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYGENIFLPIGQ--ALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTGRKGFATIAYQATVDHSGRALAATKGFPGATNDKSII 408
            +++LA L +LGRGNCF  + Q S MS  T Q MFHKFC+HFA E+Y E+I+LP  Q   L+ +M +YD+LGF+GA+GS DV HI W  CP + AR+YTG++G  T+ YQ TV+H+GRA+A T+GF  +TNDK+ +
Sbjct:   97 HKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31799.8564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH50_9PHAE4.110e-5461.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.560e-5261.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE7.120e-4961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.190e-4859.26DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N4_9PHAE5.510e-4860.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.310e-4757.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE1.780e-4659.84DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE6.260e-4656.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.130e-4556.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE3.120e-4554.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31799contigH-paniculata_contig31799:593..1000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.129133-CDS-H-paniculata_contig31799:592..10001622929979.129133-CDS-H-paniculata_contig31799:592..1000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31799 593..1000 +
1691481095.61023-CDS-H-paniculata_contig31799:592..10001691481095.61023-CDS-H-paniculata_contig31799:592..1000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31799 593..1000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31799.8564.1prot_H-paniculata_contig31799.8564.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31799 593..1000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31799.8564.1

>prot_H-paniculata_contig31799.8564.1 ID=prot_H-paniculata_contig31799.8564.1|Name=mRNA_H-paniculata_contig31799.8564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
SPSYQILASLQVLGRGNCFDDVSQFSLMSESTAQVMFHKFCEHFALELYG
ENIFLPIGQALEKLMHEYDQLGFTGAVGSTDVAHIKWDCCPCSFARTYTG
RKGFATIAYQATVDHSGRALAATKGFPGATNDKSII
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mRNA from alignment at H-paniculata_contig31799:593..1000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31799.8564.1 ID=mRNA_H-paniculata_contig31799.8564.1|Name=mRNA_H-paniculata_contig31799.8564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig31799:593..1000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCCTCGTACCAGATTCTCGCTTCCCTTCAGGTACTGGGTAGGGGGAA CTGCTTTGACGACGTCTCCCAGTTCTCACTCATGAGCGAGTCAACGGCAC AAGTCATGTTCCACAAGTTCTGCGAGCATTTTGCGTTGGAGCTGTATGGT GAAAACATCTTCCTCCCTATCGGGCAGGCTCTCGAGAAGCTCATGCATGA GTATGACCAGTTGGGATTCACCGGGGCAGTCGGCTCAACCGATGTTGCCC ACATCAAATGGGATTGCTGCCCGTGCTCCTTTGCCCGTACCTACACGGGC AGAAAAGGATTCGCGACGATCGCATACCAAGCGACGGTCGACCATAGCGG CCGCGCCCTTGCCGCCACGAAGGGCTTTCCTGGCGCTACCAATGACAAGT CAATCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig31799:593..1000+

>mRNA_H-paniculata_contig31799.8564.1 ID=mRNA_H-paniculata_contig31799.8564.1|Name=mRNA_H-paniculata_contig31799.8564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig31799:593..1000+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCCTCGTACCAGATTCTCGCTTCCCTTCAGGTACTGGGTAGGGGGAA
CTGCTTTGACGACGTCTCCCAGTTCTCACTCATGAGCGAGTCAACGGCAC
AAGTCATGTTCCACAAGTTCTGCGAGCATTTTGCGTTGGAGCTGTATGGT
GAAAACATCTTCCTCCCTATCGGGCAGGCTCTCGAGAAGCTCATGCATGA
GTATGACCAGTTGGGATTCACCGGGGCAGTCGGCTCAACCGATGTTGCCC
ACATCAAATGGGATTGCTGCCCGTGCTCCTTTGCCCGTACCTACACGGGC
AGAAAAGGATTCGCGACGATCGCATACCAAGCGACGGTCGACCATAGCGG
CCGCGCCCTTGCCGCCACGAAGGGCTTTCCTGGCGCTACCAATGACAAGT
CAATCATCTCTCCCTCGTACCAGATTCTCGCTTCCCTTCAGGTACTGGGT
AGGGGGAACTGCTTTGACGACGTCTCCCAGTTCTCACTCATGAGCGAGTC
AACGGCACAAGTCATGTTCCACAAGTTCTGCGAGCATTTTGCGTTGGAGC
TGTATGGTGAAAACATCTTCCTCCCTATCGGGCAGGCTCTCGAGAAGCTC
ATGCATGAGTATGACCAGTTGGGATTCACCGGGGCAGTCGGCTCAACCGA
TGTTGCCCACATCAAATGGGATTGCTGCCCGTGCTCCTTTGCCCGTACCT
ACACGGGCAGAAAAGGATTCGCGACGATCGCATACCAAGCGACGGTCGAC
CATAGCGGCCGCGCCCTTGCCGCCACGAAGGGCTTTCCTGGCGCTACCAA
TGACAAGTCAATCATC
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