mRNA_H-paniculata_contig31780.8561.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig31780.8561.1
Unique Name	mRNA_H-paniculata_contig31780.8561.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.700e-27
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:   16 RPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 126

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.900e-26
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:   93 RPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 203

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.330e-26
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS D   F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:   56 RPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 166

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.600e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = -2

Query:  273 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAAR*CSITVFSY 614
            R GHVS D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A   S   FS+
Sbjct:  214 RPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENTRTRSTSDQPTPTLWGWSVDA---SYNAFSF 331

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.350e-25
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS D   ++LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:   54 RPGHVSFDEGSYKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 164

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.000e-25
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHV+ D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:  174 RPGHVAFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLFQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 284

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BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.010e-24
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:  282 RPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 392

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.560e-24
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct:  321 RPGHVSFDERSFKLTSLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 431

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5JU10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU10_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.310e-24
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = -2

Query:  330 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRS 614
            R GHVS D R F+LT LAVESFGRLG+ G E ++ +A+   G ++G  +S KGV  ER+ +++SV TQVAISRRVQ Y+LALRGRQ+A     RS
Sbjct:   32 RPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDGGTMSLKGVFKERLPRIVSVATQVAISRRVQRYKLALRGRQDAENRRTRS 126

[Close]

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.710e-24
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = -2

Query:  303 RRGHVSVDGRCFELTPLAVESFGRLGKRGEELLERVASSMVGEQEGDEVSQKGVLLERIKQVISVTTQVAISRRVQIYRLALRGRQEAAEGALRSRA-------WGWNLAA 614
            R GHVS+D R F+LT LAVESFGRLG+ G E ++ +A+  VG ++G  ++ KGV  ER+ Q++SV TQVAISRRVQ Y+LALRGRQ+A     RS +       WGW++ A
Sbjct: 1127 RPGHVSLDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 1237

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig31780.8561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K2J3_9PHAE	3.700e-27	53.15	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAD2_9PHAE	5.900e-26	53.15	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JL29_9PHAE	6.330e-26	52.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN7_9PHAE	2.600e-25	51.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN4_9PHAE	3.350e-25	51.35	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKF1_9PHAE	7.000e-25	52.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	1.010e-24	53.15	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEF8_9PHAE	1.560e-24	53.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU10_9PHAE	2.310e-24	56.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMQ2_9PHAE	2.710e-24	53.15	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig31780	contig	H-paniculata_contig31780:1581..2201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	621
Cds size	333
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929978.7770863-UTR-H-paniculata_contig31780:1580..1868	1622929978.7770863-UTR-H-paniculata_contig31780:1580..1868	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig31780 1581..1868 +
1691481095.473568-UTR-H-paniculata_contig31780:1580..1868	1691481095.473568-UTR-H-paniculata_contig31780:1580..1868	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig31780 1581..1868 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929978.788033-CDS-H-paniculata_contig31780:1868..2201	1622929978.788033-CDS-H-paniculata_contig31780:1868..2201	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig31780 1869..2201 +
1691481095.4842527-CDS-H-paniculata_contig31780:1868..2201	1691481095.4842527-CDS-H-paniculata_contig31780:1868..2201	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig31780 1869..2201 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig31780.8561.1	prot_H-paniculata_contig31780.8561.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig31780 1869..2201 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig31780:1581..2201+
coding sequence from alignment at H-paniculata_contig31780:1581..2201+

protein sequence of mRNA_H-paniculata_contig31780.8561.1

>prot_H-paniculata_contig31780.8561.1 ID=prot_H-paniculata_contig31780.8561.1|Name=mRNA_H-paniculata_contig31780.8561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MEHYRAAKFHPHARERRAPSAASCLPRRASLYICTRLEIATCVVTEMTCF
ILSSNTPFCETSSPSCSPTMLDATRSSNSSPRFPRRPKLSTARGVSSKQR
PSTDTCPLRG*

mRNA from alignment at H-paniculata_contig31780:1581..2201+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig31780.8561.1 ID=mRNA_H-paniculata_contig31780.8561.1|Name=mRNA_H-paniculata_contig31780.8561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig31780:1581..2201+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACTCAGAACTGGCTTCGGGAATCTTCAAAGGTAAGCTCACAAACCAAA
AAAAAGAAAAAGGAACTGCAGACGAAACAAGAAAAAATCAAACCTAATAA
TAACCACGCCTTGTACTCGAATACCCGATCTACAGAAAAACCCTCCTGGG
CGAAAAACTGTTGTCCCTCACTTTAGCACTAGAAACGTGTAACTGACGCT
TACCAGTTCAAAACATTCCGAATAGCGAAATCCCTCCGCTAACTAACGGA
ATAACGTATGTAAACTCGAAAAATAAGAAAACACCGTGATGGAACACTAC
CGCGCCGCTAAATTCCATCCCCACGCTCGAGAACGGAGGGCCCCTTCTGC
TGCTTCTTGCCTTCCCCGGAGAGCCAGTCTATATATCTGCACCCGTCTCG
AGATAGCCACCTGTGTAGTCACCGAAATGACCTGTTTTATCCTCTCCAGC
AATACTCCTTTCTGCGAAACCTCGTCGCCCTCCTGTTCCCCCACCATGCT
GGATGCCACCCGCTCAAGCAACTCCTCTCCGCGCTTTCCCAGACGCCCAA
AGCTTTCCACCGCGAGGGGGGTAAGTTCGAAACAACGCCCGTCGACGGAC
ACGTGTCCTCTTCGAGGCTAG

Coding sequence (CDS) from alignment at H-paniculata_contig31780:1581..2201+

>mRNA_H-paniculata_contig31780.8561.1 ID=mRNA_H-paniculata_contig31780.8561.1|Name=mRNA_H-paniculata_contig31780.8561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig31780:1581..2201+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACTACCGCGCCGCTAAATTCCATCCCCACGCTCGAGAACGGAG
GGCCCCTTCTGCTGCTTCTTGCCTTCCCCGGAGAGCCAGTCTATATATCT
GCACCCGTCTCGAGATAGCCACCTGTGTAGTCACCGAAATGACCTGTTTT
ATCCTCTCCAGCAATACTCCTTTCTGCGAAACCTCGTCGCCCTCCTGTTC
CCCCACCATGCTGGATGCCACCCGCTCAAGCAACTCCTCTCCGCGCTTTC
CCAGACGCCCAAAGCTTTCCACCGCGAGGGGGGTAAGTTCGAAACAACGC
CCGTCGACGGACACGTGTCCTCTTCGAGGCTAGATGGAACACTACCGCGC
CGCTAAATTCCATCCCCACGCTCGAGAACGGAGGGCCCCTTCTGCTGCTT
CTTGCCTTCCCCGGAGAGCCAGTCTATATATCTGCACCCGTCTCGAGATA
GCCACCTGTGTAGTCACCGAAATGACCTGTTTTATCCTCTCCAGCAATAC
TCCTTTCTGCGAAACCTCGTCGCCCTCCTGTTCCCCCACCATGCTGGATG
CCACCCGCTCAAGCAACTCCTCTCCGCGCTTTCCCAGACGCCCAAAGCTT
TCCACCGCGAGGGGGGTAAGTTCGAAACAACGCCCGTCGACGGACACGTG
TCCTCTTCGAGGCTAG