mRNA_H-paniculata_contig31778.8556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31778.8556.1
Unique NamemRNA_H-paniculata_contig31778.8556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31778.8556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31778contigH-paniculata_contig31778:683..2076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1394
Cds size1392
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.2710674-CDS-H-paniculata_contig31778:682..20741622929978.2710674-CDS-H-paniculata_contig31778:682..2074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31778 683..2074 +
1691481095.2359061-CDS-H-paniculata_contig31778:682..20741691481095.2359061-CDS-H-paniculata_contig31778:682..2074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31778 683..2074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31778.8556.1prot_H-paniculata_contig31778.8556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31778 683..2074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31778.8556.1

>prot_H-paniculata_contig31778.8556.1 ID=prot_H-paniculata_contig31778.8556.1|Name=mRNA_H-paniculata_contig31778.8556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=464bp
AGEGCAAGPGVPEGVVDAISILSSGSDEGWDSDDGGTEKGGSERETCGDG
TDCGYDICDVSDDSSGEEERSEEGSQDLADEEEEEEDDGDADDDDDDNND
DNDDDDHDDERHASYSAGRGRAGTFSAMVGNSSVIDLSGSPPPSARKRMA
TKTKRTSTDALVSTPENERSGADADGIRVAMGAKERSEENPDSHSCVYSD
KPGGSSIVIATAERQRQARMKITKREKRQGEKMETRVLSKRNDYLDVVTI
DATSGKGAIDPPRIPTPPPSLPPLDETDVGAPMSTGRLGSFLRNVAPTPD
LQKLERIDSAAARASNVAAVMKDGVEGKNAAAAPTAAAAAGGGRTGGVAL
EKGLGFFVETRPDPELLKVVAMEAAVVTGGAAIPAAPAGASDAGRHSAKS
LRKPEGKRRERPRGMEDSDAARNAVGYGEDRGGTAEDTRFRHQHPGLEAA
VAAEAAKAAVRAGA
back to top

mRNA from alignment at H-paniculata_contig31778:683..2076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31778.8556.1 ID=mRNA_H-paniculata_contig31778.8556.1|Name=mRNA_H-paniculata_contig31778.8556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-paniculata_contig31778:683..2076+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGGAGGGGTGTGCAGCCGGCCCGGGGGTGCCGGAGGGAGTAGTGGA
CGCTATTTCCATTTTATCTTCAGGGTCTGACGAAGGATGGGATTCTGACG
ACGGGGGAACAGAAAAAGGAGGTTCCGAGCGTGAAACTTGCGGAGATGGT
ACCGATTGTGGTTATGATATTTGCGATGTCTCCGACGATAGTTCCGGGGA
GGAAGAACGTTCCGAGGAAGGTTCCCAGGATCTTGCCGATGAGGAGGAGG
AGGAGGAGGATGATGGTGATGCCGATGATGATGATGATGATAATAATGAT
GATAATGATGATGATGATCACGACGACGAGCGGCATGCTTCTTATTCTGC
TGGCCGTGGTAGGGCGGGTACGTTCTCTGCGATGGTGGGTAACTCCTCCG
TGATCGACCTCAGCGGTTCGCCACCACCAAGTGCTAGGAAAAGAATGGCA
ACGAAAACCAAACGAACGTCGACGGATGCGCTTGTCTCGACACCGGAAAA
TGAGCGTAGTGGAGCTGATGCCGACGGAATCCGGGTCGCAATGGGCGCCA
AGGAGCGTTCCGAGGAAAATCCCGATAGTCATTCCTGCGTATATTCGGAC
AAGCCAGGAGGTTCTAGCATTGTCATAGCTACAGCAGAAAGACAACGGCA
AGCGCGAATGAAGATAACGAAAAGAGAGAAAAGGCAGGGTGAGAAAATGG
AGACAAGAGTTCTTTCAAAAAGGAATGATTACCTCGACGTCGTCACAATC
GACGCCACCAGTGGAAAAGGAGCTATAGATCCTCCCCGCATTCCCACCCC
GCCGCCGTCGCTGCCGCCGCTGGACGAGACGGATGTTGGTGCGCCAATGT
CGACGGGACGTCTAGGGTCCTTTCTGCGCAACGTCGCACCTACCCCGGAC
CTGCAGAAACTTGAGAGGATTGATTCAGCGGCAGCGCGAGCAAGCAACGT
TGCCGCTGTGATGAAGGATGGTGTCGAAGGGAAGAATGCGGCGGCTGCTC
CTACTGCGGCCGCGGCGGCGGGGGGGGGAAGAACTGGTGGTGTGGCGCTG
GAGAAGGGCTTAGGTTTCTTTGTCGAAACTAGGCCGGACCCGGAGTTGCT
GAAAGTTGTGGCGATGGAGGCGGCGGTGGTAACCGGGGGGGCGGCGATAC
CAGCGGCACCAGCTGGTGCGAGTGACGCCGGTAGACATTCAGCGAAGTCT
CTTCGCAAGCCGGAGGGCAAGAGGAGAGAAAGGCCGAGGGGGATGGAGGA
TTCAGACGCGGCGAGGAACGCTGTGGGCTATGGTGAAGATAGAGGTGGTA
CAGCGGAAGATACCCGATTTCGGCACCAACATCCGGGTCTGGAGGCGGCC
GTAGCCGCGGAGGCGGCGAAGGCGGCAGTGAGGGCAGGGGCAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31778:683..2076+

>mRNA_H-paniculata_contig31778.8556.1 ID=mRNA_H-paniculata_contig31778.8556.1|Name=mRNA_H-paniculata_contig31778.8556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2784bp|location=Sequence derived from alignment at H-paniculata_contig31778:683..2076+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGGAGGGGTGTGCAGCCGGCCCGGGGGTGCCGGAGGGAGTAGTGGA
CGCTATTTCCATTTTATCTTCAGGGTCTGACGAAGGATGGGATTCTGACG
ACGGGGGAACAGAAAAAGGAGGTTCCGAGCGTGAAACTTGCGGAGATGGT
ACCGATTGTGGTTATGATATTTGCGATGTCTCCGACGATAGTTCCGGGGA
GGAAGAACGTTCCGAGGAAGGTTCCCAGGATCTTGCCGATGAGGAGGAGG
AGGAGGAGGATGATGGTGATGCCGATGATGATGATGATGATAATAATGAT
GATAATGATGATGATGATCACGACGACGAGCGGCATGCTTCTTATTCTGC
TGGCCGTGGTAGGGCGGGTACGTTCTCTGCGATGGTGGGTAACTCCTCCG
TGATCGACCTCAGCGGTTCGCCACCACCAAGTGCTAGGAAAAGAATGGCA
ACGAAAACCAAACGAACGTCGACGGATGCGCTTGTCTCGACACCGGAAAA
TGAGCGTAGTGGAGCTGATGCCGACGGAATCCGGGTCGCAATGGGCGCCA
AGGAGCGTTCCGAGGAAAATCCCGATAGTCATTCCTGCGTATATTCGGAC
AAGCCAGGAGGTTCTAGCATTGTCATAGCTACAGCAGAAAGACAACGGCA
AGCGCGAATGAAGATAACGAAAAGAGAGAAAAGGCAGGGTGAGAAAATGG
AGACAAGAGTTCTTTCAAAAAGGAATGATTACCTCGACGTCGTCACAATC
GACGCCACCAGTGGAAAAGGAGCTATAGATCCTCCCCGCATTCCCACCCC
GCCGCCGTCGCTGCCGCCGCTGGACGAGACGGATGTTGGTGCGCCAATGT
CGACGGGACGTCTAGGGTCCTTTCTGCGCAACGTCGCACCTACCCCGGAC
CTGCAGAAACTTGAGAGGATTGATTCAGCGGCAGCGCGAGCAAGCAACGT
TGCCGCTGTGATGAAGGATGGTGTCGAAGGGAAGAATGCGGCGGCTGCTC
CTACTGCGGCCGCGGCGGCGGGGGGGGGAAGAACTGGTGGTGTGGCGCTG
GAGAAGGGCTTAGGTTTCTTTGTCGAAACTAGGCCGGACCCGGAGTTGCT
GAAAGTTGTGGCGATGGAGGCGGCGGTGGTAACCGGGGGGGCGGCGATAC
CAGCGGCACCAGCTGGTGCGAGTGACGCCGGTAGACATTCAGCGAAGTCT
CTTCGCAAGCCGGAGGGCAAGAGGAGAGAAAGGCCGAGGGGGATGGAGGA
TTCAGACGCGGCGAGGAACGCTGTGGGCTATGGTGAAGATAGAGGTGGTA
CAGCGGAAGATACCCGATTTCGGCACCAACATCCGGGTCTGGAGGCGGCC
GTAGCCGCGGAGGCGGCGAAGGCGGCAGTGAGGGCAGGGGCAGCGGGGGA
GGGGTGTGCAGCCGGCCCGGGGGTGCCGGAGGGAGTAGTGGACGCTATTT
CCATTTTATCTTCAGGGTCTGACGAAGGATGGGATTCTGACGACGGGGGA
ACAGAAAAAGGAGGTTCCGAGCGTGAAACTTGCGGAGATGGTACCGATTG
TGGTTATGATATTTGCGATGTCTCCGACGATAGTTCCGGGGAGGAAGAAC
GTTCCGAGGAAGGTTCCCAGGATCTTGCCGATGAGGAGGAGGAGGAGGAG
GATGATGGTGATGCCGATGATGATGATGATGATAATAATGATGATAATGA
TGATGATGATCACGACGACGAGCGGCATGCTTCTTATTCTGCTGGCCGTG
GTAGGGCGGGTACGTTCTCTGCGATGGTGGGTAACTCCTCCGTGATCGAC
CTCAGCGGTTCGCCACCACCAAGTGCTAGGAAAAGAATGGCAACGAAAAC
CAAACGAACGTCGACGGATGCGCTTGTCTCGACACCGGAAAATGAGCGTA
GTGGAGCTGATGCCGACGGAATCCGGGTCGCAATGGGCGCCAAGGAGCGT
TCCGAGGAAAATCCCGATAGTCATTCCTGCGTATATTCGGACAAGCCAGG
AGGTTCTAGCATTGTCATAGCTACAGCAGAAAGACAACGGCAAGCGCGAA
TGAAGATAACGAAAAGAGAGAAAAGGCAGGGTGAGAAAATGGAGACAAGA
GTTCTTTCAAAAAGGAATGATTACCTCGACGTCGTCACAATCGACGCCAC
CAGTGGAAAAGGAGCTATAGATCCTCCCCGCATTCCCACCCCGCCGCCGT
CGCTGCCGCCGCTGGACGAGACGGATGTTGGTGCGCCAATGTCGACGGGA
CGTCTAGGGTCCTTTCTGCGCAACGTCGCACCTACCCCGGACCTGCAGAA
ACTTGAGAGGATTGATTCAGCGGCAGCGCGAGCAAGCAACGTTGCCGCTG
TGATGAAGGATGGTGTCGAAGGGAAGAATGCGGCGGCTGCTCCTACTGCG
GCCGCGGCGGCGGGGGGGGGAAGAACTGGTGGTGTGGCGCTGGAGAAGGG
CTTAGGTTTCTTTGTCGAAACTAGGCCGGACCCGGAGTTGCTGAAAGTTG
TGGCGATGGAGGCGGCGGTGGTAACCGGGGGGGCGGCGATACCAGCGGCA
CCAGCTGGTGCGAGTGACGCCGGTAGACATTCAGCGAAGTCTCTTCGCAA
GCCGGAGGGCAAGAGGAGAGAAAGGCCGAGGGGGATGGAGGATTCAGACG
CGGCGAGGAACGCTGTGGGCTATGGTGAAGATAGAGGTGGTACAGCGGAA
GATACCCGATTTCGGCACCAACATCCGGGTCTGGAGGCGGCCGTAGCCGC
GGAGGCGGCGAAGGCGGCAGTGAGGGCAGGGGCA
back to top