mRNA_H-paniculata_contig31771.8555.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31771.8555.1
Unique NamemRNA_H-paniculata_contig31771.8555.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 3.000e-94
Identity = 171/434 (39.40%), Postives = 250/434 (57.60%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSG-KVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGWTQLSKVKVLFDNKGLL 1299
            W     KE+ NL  H V  L+P  SVP     +GT +VFK   D RFKARLVV G  Q+ G D   + APVCR+ S ++   IG   +W    LD   AFLN      VY + APG +  + A+G+P V  L RS+YGL QS  +WN T+D+ L  LG+  T SD CVY   S    ++LT++VDDILITG  + L+   + +   +F +TD+G V  ILGI+V R+   GTL +SQ  YV ++L+ FGM+EANP  +P  G ++      D  L     K Y+++ GS+++  QCTRFD+ ++    ++  +  +Q NM A K +LRYLR  P LPI Y++  F+L  ++D+S+G      +STTG + FLA GL+   +  Q +T  S+ EA++  L+  A++ + +SN + EL +     V +  D+ G L
Sbjct:  201 WKGACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGAL 634          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.970e-94
Identity = 171/434 (39.40%), Postives = 252/434 (58.06%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSG-KVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGWTQLSKVKVLFDNKGLL 1299
            W     KE++NL  H V +L+P  SVP     +GT +VFK K D RFKARLVV G  Q+ G D   + APVCR+ S ++   IG   +W    LD   AFLN      VY + APG +  + A+G+P V  L RS+YGL QS  +WN T+D+ L   G+  T SD CVY   S    ++LT++VDDILITG  + L+   + +   +F +TD+G V  ILGI+V R+   GTL +SQ  YV ++L+ FGM+EANP  +P  G ++      D  L     K Y+++ GS+++  QCTRFD+ ++    ++  +  +Q NM A K +LRYLR  P LPI Y++  F+L  ++D+S+G      +STTG + FLA GL+   +  Q +T  S+ EA++  L+  A++ + +SN + EL +     V +  D+ G L
Sbjct:  357 WKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGAL 790          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 2.020e-92
Identity = 166/426 (38.97%), Postives = 247/426 (57.98%), Query Frame = 1
Query:   25 LNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSG-KVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGWTQLSKVKVLFDNKGLL 1299
            ++NL  H V +L+P  SVP     +GT +VFK K D RFKARLVV G  Q+ G D   + APVCR+ S ++   IG   +W    LD   AFLN      VY + APG +  + A+G+P V  L RS+YGL QS  +WN T+D+ L   G+  T SD CVY   S    ++LT++VDDILITG  + L+   + +   +F +TD+G V  ILGI+V R+   GTL +SQ  YV + L+ FGM+EANP  +   G ++      D  L     K Y+++ GS+++  QCT+FD+ ++    ++  +  +Q NM A K +LRYLR  P LPI Y++  F+L  ++D+S+G      +STTG + FLA GL+   +  Q +T  S+ EA++  L+  A++ + +SN + EL +     V +  D+ G L
Sbjct:    1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGAL 426          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 6.130e-90
Identity = 167/434 (38.48%), Postives = 248/434 (57.14%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSG-KVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGWTQLSKVKVLFDNKGLL 1299
            W     KE++NL  H V +L+P  SVP     +GT +VFK K D RFKA LVV G  Q+ G D  S+ APVCR+ S ++   IG   +W    LD  VAFLN      VY + APG +  + A+G+P V  L RS+YGL QS  +WN T+++ L+  G+  T  D CVY   S    ++LT++VDDILITG  + L +  + +   +F +TD+G V  ILGI+V R+   GTL +SQ  YV ++L+ FGM+EANP  +   G ++      D  L     K Y+++  S+++  QCTRFD+ ++    ++  +  +Q N+ A K +LRYLR  P LPI Y++  F L   +D+S+G      +STTG + FLA GL+   +  Q +T  S+ EA++  L+  A++ I +SN + E  +     V +  D+ G L
Sbjct:   94 WKGECIKEMDNLRKHNVYNLVPLSSVPKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGGDQQL-VDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGAL 526          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.630e-84
Identity = 160/434 (36.87%), Postives = 237/434 (54.61%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSGKVLQ-QTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGWTQLSKVKVLFDNKGLL 1299
            W   +  E+ NL  H+V   +    VP       T +VFK+K D RFKARLV  G  Q+ G       APV RL S ++L  I     W    LD   AFLN      VY + APG    DP +G+  V  L +S+YGL QS ++WN  I+  L   G+  T SD CVY   S     +L ++VDDILITG ++ ++   + + M  F +TD+G V  ++GIEV R+   GTL +SQ  Y   IL+ +GME+ANP  +P  G  L  +   D  L  +  ++++AI GSL++  QCTR+D+ +++    R     +Q +M A K +LRYLR  PDLPI Y+K  F+L  ++D+S+G      +STTG + FL  GL+   +  Q +   ++ EA+L  L+  A++ + +SN + E+G+     V +  D+ G L
Sbjct:  234 WKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGAL 667          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 2.300e-84
Identity = 158/418 (37.80%), Postives = 240/418 (57.42%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSG-KVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGW 1251
            W     KE++NL  H V +L+P  SVP     +GT + FK   D RFKARLVV G  Q+ G D   + APVCR+ S ++   IG   +W    LD   AFLN      VY + APG +  + A+G+P +  L RS+YGL Q   +W  T+D+ L   G+  T SD CVY   S    ++LT++VDDILITG  + L+   + +   +F +TD+G V  ILGI+V R+   GTL +SQ  YV ++L+ FGM+EANP  +P  G ++      D  L     K Y+++ GS+++  QCTRFD+ ++    ++  +  +Q NM A K +LRY R  P LPI  ++ +F+L+  + +S+G      +STTG + FLA GL+   +  Q ++  S+ EA++  L+  A++ + +SN + EL +
Sbjct:  400 WKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFAFKRTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNYATGEPMMYELERSLYGLSQYPALWKDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYRRGNPVLPIVSKRGHFRLVALTGSSFGANPGNGRSTTGYLFFLAGGLISYGAKTQTLSAHSTVEAEIQALSYSAREAVYISNFMTELNF 817          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 2.790e-83
Identity = 153/377 (40.58%), Postives = 218/377 (57.82%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYT-KCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSGKVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLV 1128
            W     KE++NL  H V +L+P  SVP     +GT +VF  K D RFKARLVV G  Q  G D   + APVCR+ S ++   IG   +W    LD   AFLN      VY + APG +  + A+G+P V  L RS+YGL QS  +WN T+D+ L   G+  T SD CVY    S  + ++LT+ VDDILITG  + L+   + +   +F +TD+G V  ILGI+V R+   GTL +SQ   V ++L+ FGM+EANP  +   G  +       Q        Y+++ GS+++  QCTRFD+ ++  P ++  +  +Q NM A K +LRYLR  P LPI Y++  F+L  ++D+S+G      +STTG +SFLA GL+
Sbjct:  300 WKGACSKEMDNLRKHNVYNLVPLSSVPKGEQILGTKFVFTKKLDGRFKARLVVGGHRQAPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNTIVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHNVNTLLERFGMQEANPVSTSGYGAEISTNQPQDQFLGPMVNFYQSMTGSILYVAQCTRFDLSYAALPLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIAYKRGQFRLAAFTDSSFGANPDNGRSTTGYLSFLAGGLI 676          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 7.190e-82
Identity = 164/435 (37.70%), Postives = 244/435 (56.09%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSGKVLQQTA-DDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELGW-TQLSKVKVLFDNKGLL 1299
            W     +E+ +L D +V  L+P  +VPP    I + WVFK K D  FK R+V QGW Q  G+DC ST APVCR++S +++  I    +     +D   AFL   ++E V+ +Q PGF + D   G   VM L +S+YGL QS   W  TID  L  +GF    SD CVY      + I LTL+VDD+L+ G     +  V+    K+F +TDLG  SL+LG+E+ R++ + TL +SQ  Y  SIL+ FG+  + P  +P  G  +     +DT L E+ T++Y+ IVGSL++  Q  R+DI ++    AR M K S+ +M+A K  LRYL    D  I Y+K  F+L  +SD+++       KST+  ++ LA+  +   S LQ +T  S+ EA+LV  A    + +  SN++ ELG+  + +++ V  DN   L
Sbjct: 1166 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATL 1599          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.720e-81
Identity = 143/361 (39.61%), Postives = 221/361 (61.22%), Query Frame = 1
Query:    1 WLETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITGPSETLLIGVRNDFMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSGKVLQQTADDT-QLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETR 1080
            W   + KE+ +L DH VADL+P  S+PP    IG+ W++K+K     KARL+VQGW Q+HGIDC  T APV R  SQ +L+ I A R +    +D   AFL   ++E VY +QA G+ + D  +G P VM L++S+YGL+QS   +     K ++ +GFT  +SD CVY   +  +Y +L ++VDD  + G + +++  ++     KF +TD G   L+LG+E++++   G + +SQHKYV++IL  + M +  PA +P SG  ++Q  ++   L E+  K Y+ IVGSL+F T  TR++I +++    R MNK +  +M+  KR+LRYLR  PD+P+K+R+  + L  Y DAS+     R
Sbjct:  905 WKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQS--DGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSER 1263          
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 1.860e-80
Identity = 165/446 (37.00%), Postives = 245/446 (54.93%), Query Frame = 1
Query:    7 ETLRKELNNLDDHQVADLIPAHSVPPTHSSIGTCWVFKLKTDRRFKARLVVQGWAQQHGIDCDSTLAPVCRLESQQLLLVIGASRHWNNLVLDGQVAFLNGTLKESVYCKQAPGFAMMDPASGQPYVMSLRRSIYGLRQSLNVWNFTIDKELRSLGFTPTVSDSCVYTKCSR*SYIMLTLFVDDILITG----------PSETLLIGVRND---FMKKFAITDLGNVSLILGIEVTRNKTSGTLELSQHKYVLSILK*FGMEEANPAKSPTSGKVLQQTA-DDTQLHEQGTKQYRAIVGSLIFFTQCTRFDICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGYSDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLATCAKQGICLSNLLMELG-WTQLSKVKVLFDNKGLL 1299
            + L++E+ +L + +V  L+P  +VPP    I + WVFK K D  FK R+V QGW Q  G+DC ST APVCR++S +++  I    +     +D   AFL   ++E V+ +Q PGF + D   G   VM L +S+YGL QS   W  TID  L  +GF    SD CVY      + I LTL+VDD+L+ G           S   L G+        K+F +TDLG  S  LG+++ R++ + TL +SQ  Y  SIL+ FGM  + P  +P  G  +     +DT L E+ T++Y+ IVGSL++  Q  R+DI ++    AR M K S+ +M+A K  LRYL    D  I Y+K  F+L  +SD+++       KST+  ++ LA+  +   S LQ +T  S+ EA+LV  A   K+ +  SN++ ELG   + +++ V  DN   L
Sbjct:  147 QPLKREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATL 591          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31771.8555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF89_9PHAE3.000e-9439.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE3.970e-9439.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE2.020e-9238.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE6.130e-9038.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.630e-8436.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7T8_9PHAE2.300e-8437.80Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KS50_9PHAE2.790e-8340.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE7.190e-8237.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE1.720e-8139.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.860e-8037.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31771contigH-paniculata_contig31771:1222..2520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score94.0
Seed ortholog evalue8e-17
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size1299
Cds size552
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.1958873-UTR-H-paniculata_contig31771:1221..19681622929978.1958873-UTR-H-paniculata_contig31771:1221..1968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31771 1222..1968 +
1691481095.2165918-UTR-H-paniculata_contig31771:1221..19681691481095.2165918-UTR-H-paniculata_contig31771:1221..1968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31771 1222..1968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.2218218-CDS-H-paniculata_contig31771:1968..25201622929978.2218218-CDS-H-paniculata_contig31771:1968..2520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31771 1969..2520 +
1691481095.2254815-CDS-H-paniculata_contig31771:1968..25201691481095.2254815-CDS-H-paniculata_contig31771:1968..2520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31771 1969..2520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31771.8555.1prot_H-paniculata_contig31771.8555.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31771 1969..2520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31771.8555.1

>prot_H-paniculata_contig31771.8555.1 ID=prot_H-paniculata_contig31771.8555.1|Name=mRNA_H-paniculata_contig31771.8555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MEEANPAKSPTSGKVLQQTADDTQLHEQGTKQYRAIVGSLIFFTQCTRFD
ICHSMSPAARFMNKFSQDNMIAVKRILRYLRWQPDLPIKYRKNNFQLMGY
SDASYGTEETRTKSTTGSMSFLASGLVHISSSLQRITPTSSTEADLVTLA
TCAKQGICLSNLLMELGWTQLSKVKVLFDNKGLL
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mRNA from alignment at H-paniculata_contig31771:1222..2520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31771.8555.1 ID=mRNA_H-paniculata_contig31771.8555.1|Name=mRNA_H-paniculata_contig31771.8555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1299bp|location=Sequence derived from alignment at H-paniculata_contig31771:1222..2520+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTTGAAACCCTGAGAAAGGAGCTCAACAACCTCGACGATCATCAGGT CGCCGATCTCATTCCAGCTCACTCTGTGCCACCCACTCACTCCAGTATTG GGACTTGCTGGGTGTTTAAGCTGAAAACAGATAGACGATTCAAAGCGCGG CTTGTCGTGCAAGGATGGGCACAACAACATGGCATTGATTGCGACAGCAC GTTGGCACCTGTATGCAGACTGGAGAGTCAACAACTGCTGCTGGTTATTG GGGCTTCAAGGCATTGGAACAATCTGGTCCTTGATGGGCAAGTGGCATTC CTAAATGGCACCCTGAAAGAAAGCGTCTACTGCAAGCAAGCACCAGGGTT CGCCATGATGGATCCAGCATCCGGTCAACCTTATGTGATGAGTTTACGGC GCTCTATCTATGGACTGCGCCAATCACTAAACGTGTGGAACTTCACCATC GACAAGGAACTTCGGAGCTTGGGTTTCACACCGACTGTTTCAGATTCTTG CGTTTACACAAAATGCAGCCGCTAGAGCTATATCATGCTCACACTCTTTG TTGACGATATTCTCATCACCGGACCTTCGGAGACACTGCTGATTGGGGTA CGCAACGACTTCATGAAGAAATTTGCCATCACTGACTTAGGAAACGTCTC ACTAATACTGGGCATCGAGGTAACTCGCAACAAGACGTCTGGTACGCTGG AACTATCTCAACACAAGTACGTACTTTCTATTCTGAAATGATTTGGAATG GAAGAGGCTAATCCAGCCAAAAGTCCAACATCAGGAAAGGTTCTGCAGCA AACCGCTGACGACACCCAGCTGCACGAGCAAGGAACCAAGCAGTATCGAG CTATCGTGGGGAGCCTTATCTTCTTCACTCAATGCACACGGTTTGATATC TGCCATAGCATGAGCCCAGCAGCTCGCTTCATGAACAAGTTTTCTCAGGA CAACATGATCGCGGTAAAGAGGATTTTACGGTACCTACGGTGGCAACCAG ATCTGCCCATCAAATACCGCAAAAACAATTTTCAGCTAATGGGATACTCA GACGCCTCTTATGGAACAGAGGAGACACGAACAAAGTCGACTACCGGTTC AATGTCCTTCTTGGCAAGTGGACTGGTACACATTTCTTCAAGCCTTCAAC GCATCACACCAACCTCAAGCACTGAGGCAGATCTAGTGACATTAGCTACA TGTGCAAAGCAGGGTATTTGCCTGTCAAATTTGCTGATGGAGCTTGGATG GACGCAGCTCTCCAAAGTTAAAGTGCTCTTCGACAATAAGGGCCTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig31771:1222..2520+

>mRNA_H-paniculata_contig31771.8555.1 ID=mRNA_H-paniculata_contig31771.8555.1|Name=mRNA_H-paniculata_contig31771.8555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig31771:1222..2520+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAGGCTAATCCAGCCAAAAGTCCAACATCAGGAAAGGTTCTGCA
GCAAACCGCTGACGACACCCAGCTGCACGAGCAAGGAACCAAGCAGTATC
GAGCTATCGTGGGGAGCCTTATCTTCTTCACTCAATGCACACGGTTTGAT
ATCTGCCATAGCATGAGCCCAGCAGCTCGCTTCATGAACAAGTTTTCTCA
GGACAACATGATCGCGGTAAAGAGGATTTTACGGTACCTACGGTGGCAAC
CAGATCTGCCCATCAAATACCGCAAAAACAATTTTCAGCTAATGGGATAC
TCAGACGCCTCTTATGGAACAGAGGAGACACGAACAAAGTCGACTACCGG
TTCAATGTCCTTCTTGGCAAGTGGACTGGTACACATTTCTTCAAGCCTTC
AACGCATCACACCAACCTCAAGCACTGAGGCAGATCTAGTGACATTAGCT
ACATGTGCAAAGCAGGGTATTTGCCTGTCAAATTTGCTGATGGAGCTTGG
ATGGACGCAGCTCTCCAAAGTTAAAGTGCTCTTCGACAATAAGGGCCTGC
TGATGGAAGAGGCTAATCCAGCCAAAAGTCCAACATCAGGAAAGGTTCTG
CAGCAAACCGCTGACGACACCCAGCTGCACGAGCAAGGAACCAAGCAGTA
TCGAGCTATCGTGGGGAGCCTTATCTTCTTCACTCAATGCACACGGTTTG
ATATCTGCCATAGCATGAGCCCAGCAGCTCGCTTCATGAACAAGTTTTCT
CAGGACAACATGATCGCGGTAAAGAGGATTTTACGGTACCTACGGTGGCA
ACCAGATCTGCCCATCAAATACCGCAAAAACAATTTTCAGCTAATGGGAT
ACTCAGACGCCTCTTATGGAACAGAGGAGACACGAACAAAGTCGACTACC
GGTTCAATGTCCTTCTTGGCAAGTGGACTGGTACACATTTCTTCAAGCCT
TCAACGCATCACACCAACCTCAAGCACTGAGGCAGATCTAGTGACATTAG
CTACATGTGCAAAGCAGGGTATTTGCCTGTCAAATTTGCTGATGGAGCTT
GGATGGACGCAGCTCTCCAAAGTTAAAGTGCTCTTCGACAATAAGGGCCT
GCTG
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