mRNA_H-paniculata_contig31637.8531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31637.8531.1
Unique NamemRNA_H-paniculata_contig31637.8531.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: M5BWJ0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10758 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BWJ0_THACB)

HSP 1 Score: 128 bits (322), Expect = 1.230e-31
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYT 426
            L GFVDAD+  D    +ST+G+IFK+  G+I W  RKQ  ++ S+TEAE+VAA     E ++++G L   GF   G T ++ DN+S + LS+  G H  TKHI V +H IRE +  + + LK++ T +Q+AD+LTK L RVKF T
Sbjct:  590 LVGFVDADYAGDPNTSRSTSGWIFKMTGGSIAWSSRKQPTISLSSTEAEYVAAASAARELIWVRGFLSELGFTQNGPTVVYTDNQSSMALSKNPGNHQNTKHIRVKYHFIREMIELKEIELKFIPTDEQIADMLTKPLGRVKFPT 734          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: UPI000E6FEC59 (uncharacterized protein LOC113305228 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FEC59)

HSP 1 Score: 124 bits (310), Expect = 1.730e-31
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 1
Query:    4 SLEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLRNLL 441
            SL GFVDADW  D+ +++STTGY F +   A+ WC +KQ+ V  S+TEAE+VA+     E ++LK L+G        S P+  DN+S + L+     H R+KHI +  H +RE V  R + L+ + + +Q+AD+ TK L RVKF   RNLL
Sbjct:  165 SLHGFVDADWAGDMNDRRSTTGYCFYMGSAAVSWCSKKQRNVALSSTEAEYVASTMATQECIWLKRLIGDISNKVDYSVPIKCDNQSAMQLAANPVFHARSKHIEIQHHFVREKVIDREIELQNIPSEEQVADVFTKALGRVKFENFRNLL 315          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: UPI001EE6E994 (secreted RxLR effector protein 161-like n=1 Tax=Neodiprion lecontei TaxID=441921 RepID=UPI001EE6E994)

HSP 1 Score: 121 bits (303), Expect = 3.690e-31
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLR 432
            L  + DAD+ ED E ++STTGY+F+L  G I W  ++Q+LVT S TEAE+V A     E ++L+ LL    + C  +T +F DN+S I L      H RTKHI + +H IRE V ++IL ++YVQT  Q  DI TK   R +F  LR
Sbjct:   96 LVDYSDADYAEDAETRRSTTGYVFQLAGGPITWASQRQKLVTLSTTEAEYVVASVTSREAIWLRKLLLDIEYPCADATVIFVDNQSAIRLVRNPEFHKRTKHIDIRYHYIREKVVEKILKIEYVQTKQQKGDIFTKAQPRERFCMLR 242          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901)

HSP 1 Score: 119 bits (298), Expect = 9.700e-31
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLRNLL 441
            +EG+VDAD+ ED+E ++STTGY+F L  GA+ W  ++Q++VT S TEAE+VAA     E ++L+ LL      C  +T +F DN+S + L + S  H RTKHI V  H IRE V    +  K V T  Q AD+ TK L R +F  L  L+
Sbjct:   59 IEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADLFTKALPRDRFKALCQLI 208          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 118 bits (295), Expect = 1.440e-30
Identity = 63/150 (42.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    4 SLEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLRNL 438
            SL G+ DADW  DV+  +STTGYIF++   A+ W  ++Q  V  S  EAE++A      E V+++ L         G T +FEDN+S I++++    H R KHIG+ +H IRE V    + +KY +T D +ADI TKGL   KF  LR+L
Sbjct:   27 SLVGYSDADWGGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: A0A8H7LFQ4_9AGAM (Gag-polypeptide of LTR copia-type n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7LFQ4_9AGAM)

HSP 1 Score: 118 bits (296), Expect = 1.790e-30
Identity = 61/143 (42.66%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKF 420
            LEG+VDAD+  D    +STTG++F++  G + W  RKQ  ++ S+TEAE+VAA     E ++++  LG       G+T L  DN+S + L+     H  TKHI + +H IRE +  R L L+YV T +Q+AD+LTK L R+KF
Sbjct:   68 LEGYVDADFAGDKNSSRSTTGWVFRIAGGCVAWSLRKQSTISLSSTEAEYVAASSAACELIWIRQFLGKINHRLNGATILHTDNQSSMALARDPSNHQNTKHIRIKYHFIREMIFLRELELRYVPTDEQVADVLTKPLGRLKF 210          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 122 bits (305), Expect = 2.110e-30
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLR 432
            L GFVD+D+  DV+++KST+GY+F L  GA+ W  +KQ +VT S TEAE VAA     + ++L+ +LG  G+     T LF DN S I LS+    H R+KHI V ++ +R+ V + ++ LK+  T DQL+DI+TK +    F  LR
Sbjct:  220 LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: A0A2I0ANN3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ANN3_9ASPA)

HSP 1 Score: 117 bits (292), Expect = 3.750e-30
Identity = 62/150 (41.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLRNLL 441
            L GF D+D+  D++++KST+GY+F +  GAI W  RKQ +VT S TEAE VAA     + ++L+ +L    F   GST ++ DN S I LS+    H R+KHI + +H +R+  R   + L Y ++ DQ+AD+ TK L +  F  LR  L
Sbjct:   37 LIGFTDSDYAGDLDDRKSTSGYVFFMGSGAISWSSRKQSIVTLSTTEAEFVAASACVCQAIWLRNILEEIHFKQEGSTLIYCDNISAIKLSKNPVLHGRSKHIDIKYHFLRDLTRNGTIDLIYCKSEDQVADLFTKALKQAAFLKLRKAL 186          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 124 bits (311), Expect = 4.140e-30
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVK 417
            L G+VDADW  DV +++S +GY F L  GA+ W  +KQ     S+TEAE++AA     E  +L+  LG  G  C+ +T L  DN+S + ++     H RTKHI V +H +RE V    + L+YV TGDQ+AD+LTKGL + K
Sbjct:  983 LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124          
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Match: A0A6P5RP40_PRUAV (Non-specific serine/threonine protein kinase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RP40_PRUAV)

HSP 1 Score: 124 bits (310), Expect = 5.920e-30
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    7 LEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEAEHVAA-----ETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHIGVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLRNLL 441
            LEG+ D+DW  DV+  KST+GY F +  G I W  +KQQ+V  S+TEAE++AA     + V+L+ LLG      +  T ++ DN S I L+     H RTKHI V +H IR+ V  +++ ++Y  TG+Q+ADI TKGL    F  L+ ++
Sbjct: 2100 LEGYTDSDWAGDVDSAKSTSGYAFHIGSGVISWSSKKQQVVALSSTEAEYIAATNSATQAVWLRQLLGDLHHEQKSPTTIYCDNNSAIALARNPVFHGRTKHIPVKFHYIRDLVNDKVVEVQYCPTGEQIADIFTKGLRMDAFMKLKKMM 2249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31637.8531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M5BWJ0_THACB1.230e-3145.52Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
UPI000E6FEC591.730e-3143.05uncharacterized protein LOC113305228 n=1 Tax=Papav... [more]
UPI001EE6E9943.690e-3144.90secreted RxLR effector protein 161-like n=1 Tax=Ne... [more]
UPI00193C89019.700e-3144.67secreted RxLR effector protein 161-like n=1 Tax=So... [more]
A0A1X7SFX4_AMPQE1.440e-3042.00Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A8H7LFQ4_9AGAM1.790e-3042.66Gag-polypeptide of LTR copia-type n=1 Tax=Rhizocto... [more]
A0A6D2JBX5_9BRAS2.110e-3043.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0ANN3_9ASPA3.750e-3041.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y9ZY34_9AGAM4.140e-3044.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6P5RP40_PRUAV5.920e-3042.00Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31637contigH-paniculata_contig31637:433..879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score118.6
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog400682.PAC_15699201
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3AR45@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.090295-CDS-H-paniculata_contig31637:432..8791622929975.090295-CDS-H-paniculata_contig31637:432..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31637 433..879 +
1691481093.9643123-CDS-H-paniculata_contig31637:432..8791691481093.9643123-CDS-H-paniculata_contig31637:432..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31637 433..879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31637.8531.1prot_H-paniculata_contig31637.8531.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31637 433..879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31637.8531.1

>prot_H-paniculata_contig31637.8531.1 ID=prot_H-paniculata_contig31637.8531.1|Name=mRNA_H-paniculata_contig31637.8531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
HSLEGFVDADWVEDVEEQKSTTGYIFKLNVGAIRWCPRKQQLVTWSNTEA
EHVAAETVYLKGLLGSTGFGCRGSTPLFEDNKSGINLSERSGAHCRTKHI
GVPWHGIREWVRQRILALKYVQTGDQLADILTKGLNRVKFYTLRNLLM*
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mRNA from alignment at H-paniculata_contig31637:433..879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31637.8531.1 ID=mRNA_H-paniculata_contig31637.8531.1|Name=mRNA_H-paniculata_contig31637.8531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig31637:433..879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATAGTCTGGAAGGATTCGTTGATGCCGATTGGGTAGAAGATGTCGAGGA GCAAAAGTCCACAACAGGATACATTTTCAAGCTGAACGTTGGTGCGATAC GTTGGTGCCCCAGAAAGCAACAGTTAGTCACGTGGTCCAATACAGAGGCA GAGCACGTTGCTGCAGAGACGGTATATCTTAAGGGTTTACTAGGGTCGAC AGGTTTCGGATGCAGGGGGAGCACGCCATTATTTGAGGACAATAAGTCAG GTATCAATCTCAGTGAGAGATCTGGCGCACACTGCAGGACAAAACACATC GGAGTGCCCTGGCACGGAATTCGAGAGTGGGTTCGGCAAAGAATATTGGC GTTGAAATACGTGCAGACAGGCGACCAACTTGCTGACATTCTAACGAAAG GACTGAACAGAGTAAAGTTTTATACACTGAGAAATTTACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31637:433..879+

>mRNA_H-paniculata_contig31637.8531.1 ID=mRNA_H-paniculata_contig31637.8531.1|Name=mRNA_H-paniculata_contig31637.8531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig31637:433..879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATAGTCTGGAAGGATTCGTTGATGCCGATTGGGTAGAAGATGTCGAGGA
GCAAAAGTCCACAACAGGATACATTTTCAAGCTGAACGTTGGTGCGATAC
GTTGGTGCCCCAGAAAGCAACAGTTAGTCACGTGGTCCAATACAGAGGCA
GAGCACGTTGCTGCAGAGACGGTATATCTTAAGGGTTTACTAGGGTCGAC
AGGTTTCGGATGCAGGGGGAGCACGCCATTATTTGAGGACAATAAGTCAG
GTATCAATCTCAGTGAGAGATCTGGCGCACACTGCAGGACAAAACACATC
GGAGTGCCCTGGCACGGAATTCGAGAGTGGGTTCGGCAAAGAATATTGGC
GTTGAAATACGTGCAGACAGGCGACCAACTTGCTGACATTCTAACGAAAG
GACTGAACAGAGTAAAGTTTTATACACTGAGAAATTTACTCATGTGACAT
AGTCTGGAAGGATTCGTTGATGCCGATTGGGTAGAAGATGTCGAGGAGCA
AAAGTCCACAACAGGATACATTTTCAAGCTGAACGTTGGTGCGATACGTT
GGTGCCCCAGAAAGCAACAGTTAGTCACGTGGTCCAATACAGAGGCAGAG
CACGTTGCTGCAGAGACGGTATATCTTAAGGGTTTACTAGGGTCGACAGG
TTTCGGATGCAGGGGGAGCACGCCATTATTTGAGGACAATAAGTCAGGTA
TCAATCTCAGTGAGAGATCTGGCGCACACTGCAGGACAAAACACATCGGA
GTGCCCTGGCACGGAATTCGAGAGTGGGTTCGGCAAAGAATATTGGCGTT
GAAATACGTGCAGACAGGCGACCAACTTGCTGACATTCTAACGAAAGGAC
TGAACAGAGTAAAGTTTTATACACTGAGAAATTTACTCATGTGA
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