mRNA_H-paniculata_contig31617.8527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31617.8527.1
Unique NamemRNA_H-paniculata_contig31617.8527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Match: A0A6H5JUU7_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.530e-20
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 IESAWTGAGGVEE-DIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKILQSTNREAVASGKPVPR 198
            +  AW+  GG  + DIVV AFND+VS+ SLRTL  G WLGDEVINLYMK LQ+ NREAVASGK VP+
Sbjct:  315 VRDAWSSQGGAADGDIVVRAFNDMVSKASLRTLRSGEWLGDEVINLYMKSLQARNREAVASGKQVPK 381
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BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Match: D7FMM6_ECTSI (Protease, Ulp1 family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.570e-20
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 IESAWTGAGGVEE-DIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKILQSTNREAVASGKPVPR 198
            +  AW+  GG  + DIVV AFND+VS+ SLRTL  G WLGDEVINLYMK LQ+ NREAVASGK VP+
Sbjct:  566 VRDAWSSQGGAADGDIVVRAFNDMVSKASLRTLRSGEWLGDEVINLYMKSLQARNREAVASGKQVPK 632
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BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Match: A0A6V7PHE6_ANACO (ULP_PROTEASE domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PHE6_ANACO)

HSP 1 Score: 49.3 bits (116), Expect = 3.400e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 IESAWTGAGGVEEDIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKILQSTNR 165
            ++SA  GA   EE +   + N +++R+ L+ L  GAWL DEVINLY+++L+   R
Sbjct:   33 VDSALDGANSREELVTHESSNIVITREILQCLRYGAWLNDEVINLYLELLKERER 87
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BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Match: A0A6V7PGH6_ANACO (ULP_PROTEASE domain-containing protein n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6V7PGH6_ANACO)

HSP 1 Score: 49.3 bits (116), Expect = 3.910e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 IESAWTGAGGVEEDIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKILQSTNR 165
            ++SA  GA   EE +   + N +++R+ L+ L  GAWL DEVINLY+++L+   R
Sbjct:  297 VDSALDGANSREELVTHESSNIVITREILQCLRYGAWLNDEVINLYLELLKERER 351
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BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Match: A0A6V7PGR1_ANACO (ULP_PROTEASE domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PGR1_ANACO)

HSP 1 Score: 49.3 bits (116), Expect = 3.930e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 IESAWTGAGGVEEDIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKILQSTNR 165
            ++SA  GA   EE +   + N +++R+ L+ L  GAWL DEVINLY+++L+   R
Sbjct:  341 VDSALDGANSREELVTHESSNIVITREILQCLRYGAWLNDEVINLYLELLKERER 395
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BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Match: A0A7S2V080_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V080_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.090e-5
Identity = 23/63 (36.51%), Postives = 34/63 (53.97%), Query Frame = 1 
Query:   13 WTGAGGVEEDIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKILQSTNREAVA-SGKPVPR 198
            W   GG    +V    N  + R+ ++ L P  WL DEVINLY+ +L+   +  +A SG+  PR
Sbjct:   47 WAFRGGPPSQVVANLHNVQLQREKIKCLEPTVWLLDEVINLYINLLEDREKRHMAESGRTTPR 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31617.8527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JUU7_9PHAE6.530e-2067.16ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FMM6_ECTSI6.570e-2067.16Protease, Ulp1 family n=1 Tax=Ectocarpus siliculos... [more]
A0A6V7PHE6_ANACO3.400e-541.82ULP_PROTEASE domain-containing protein n=1 Tax=Ana... [more]
A0A6V7PGH6_ANACO3.910e-541.82ULP_PROTEASE domain-containing protein n=3 Tax=Ana... [more]
A0A6V7PGR1_ANACO3.930e-541.82ULP_PROTEASE domain-containing protein n=1 Tax=Ana... [more]
A0A7S2V080_9STRA9.090e-536.51Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31617contigH-paniculata_contig31617:169..369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7FMM6
KEGG koko:K07277,ko:K08592
KEGG TC1.B.33
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009506,GO:0009909,GO:0009911,GO:0009987,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0030054,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0055044,GO:0065007,GO:0070011,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03029,ko04121
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.621082-CDS-H-paniculata_contig31617:168..3691622929974.621082-CDS-H-paniculata_contig31617:168..369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31617 169..369 +
1691481093.7393842-CDS-H-paniculata_contig31617:168..3691691481093.7393842-CDS-H-paniculata_contig31617:168..369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31617 169..369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31617.8527.1prot_H-paniculata_contig31617.8527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31617 169..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31617.8527.1

>prot_H-paniculata_contig31617.8527.1 ID=prot_H-paniculata_contig31617.8527.1|Name=mRNA_H-paniculata_contig31617.8527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
IESAWTGAGGVEEDIVVTAFNDIVSRKSLRTLTPGAWLGDEVINLYMKIL
QSTNREAVASGKPVPR*
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mRNA from alignment at H-paniculata_contig31617:169..369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31617.8527.1 ID=mRNA_H-paniculata_contig31617.8527.1|Name=mRNA_H-paniculata_contig31617.8527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig31617:169..369+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGAGAGCGCATGGACTGGAGCAGGGGGAGTCGAGGAAGACATCGTGGT
GACTGCATTCAATGACATAGTTTCGCGCAAGTCTCTGCGTACCCTCACGC
CTGGGGCATGGCTTGGGGACGAGGTGATTAATCTGTACATGAAGATCTTG
CAGTCGACAAATCGGGAAGCCGTGGCAAGCGGAAAACCTGTCCCAAGGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig31617:169..369+

>mRNA_H-paniculata_contig31617.8527.1 ID=mRNA_H-paniculata_contig31617.8527.1|Name=mRNA_H-paniculata_contig31617.8527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig31617:169..369+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGAGAGCGCATGGACTGGAGCAGGGGGAGTCGAGGAAGACATCGTGGT
GACTGCATTCAATGACATAGTTTCGCGCAAGTCTCTGCGTACCCTCACGC
CTGGGGCATGGCTTGGGGACGAGGTGATTAATCTGTACATGAAGATCTTG
CAGTCGACAAATCGGGAAGCCGTGGCAAGCGGAAAACCTGTCCCAAGGTG
AATTGAGAGCGCATGGACTGGAGCAGGGGGAGTCGAGGAAGACATCGTGG
TGACTGCATTCAATGACATAGTTTCGCGCAAGTCTCTGCGTACCCTCACG
CCTGGGGCATGGCTTGGGGACGAGGTGATTAATCTGTACATGAAGATCTT
GCAGTCGACAAATCGGGAAGCCGTGGCAAGCGGAAAACCTGTCCCAAGGT
GA
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