mRNA_H-paniculata_contig316.8523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.420e-34 Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 1
Query: 355 DDDDVVKEVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
DDD + + + M IPDGFR+QAS PA LDN L++RG L+ L MG FGGLITR+SQERT H+YDYR+HL DQS R MKL L+ Y DP+ VG+W+LLE N +QV+
Sbjct: 9 DDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVD 117
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE) HSP 1 Score: 121 bits (304), Expect = 9.050e-32 Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 394 MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
M IPD FR+QA PA LD SL++RG L+GL MG FGG+ITR+SQERT H+YDY +HL DQS RSMKLPL+ Y DP+ VG+W+LLE + +QV+
Sbjct: 10 MEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVD 105
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 129 bits (325), Expect = 5.790e-31 Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1
Query: 352 LDDDDVVKEVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
++ DD ++ M IPDGFR+QAS PA LDNSL++RG L+ L MG FGG+ITR+SQERT H+YDYR+HL D+S RSMKLPL+ Y DP+ VG+W+LLE N +QV+
Sbjct: 543 MESDDEIRA-----MEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVD 647
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.190e-30 Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 349 LLDDDDVVKEVGVVD-MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
L+DDDD ++ + M IPDGFR+QAS PA LD+SL++RG L+ L MG GG+ITR+SQERT H+YDYR+HL DQS RSMKLPL+ Y DP+ V +W+LLE + +QV+
Sbjct: 105 LVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLERSTVEQVD 215
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 118 bits (296), Expect = 4.850e-28 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 346 TLLDDDDVVKEVGVVD-MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLL 654
+L+DDDD ++ + M IPDGF +QA PA +D+SL++RG L+ L MG FGG+ITRKSQERT H+YDYR+HL DQS SMKLPL+ Y P+ VG+W+LL
Sbjct: 250 SLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB97_9PHAE) HSP 1 Score: 107 bits (268), Expect = 4.230e-26 Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query: 307 KRVGE*EICHTHPTLLDDDDVVKEVGVVD----MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
K++G + LLDDDD + D M IP GFR+Q +P LD L +RG L+ L MG FGGLI ++SQ+ T H+YDY + L+ DQS R MKL LD Y+ DP+ AVG+WVLLE
Sbjct: 3 KKIGTSQTQTDELALLDDDDSMDPQDPEDETQGMEIPTGFRIQEVKPVALDRLLFRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLLLDEYTGDPDAAVGSWVLLE 123
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE) HSP 1 Score: 107 bits (267), Expect = 6.130e-26 Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
LLDDDD E + M IP GFR+Q ++P L L++RG L+ L MG FGGLIT++ Q+ T H+YDY + L+ DQS R MKLPLD YS D + AVG+WVLLE
Sbjct: 18 LLDDDDSTDPQNPEDEIQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE 124
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5KMY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY4_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.470e-25 Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
LLDDDD + E + M IP GFR+Q + P LD L++RG L+ L MG FGGLIT++SQ+ T H+YD + L+ DQS R MKLPLD YS D + AVG+WVLLE
Sbjct: 105 LLDDDDSMDPQDPEDEIQGMEIPAGFRIQKATPVALDRLLLRRGVLVRLGMGGFGGLITQQSQKDTRHLYDCCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE 211
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5K0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X8_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.300e-25 Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
LLDDDD + E + M IP GF +Q ++P VL+ L++RG L+ L MG FGGLIT++SQ+ H+YDY + L+ QS R MKLPLD YS D + AVG+WVLLE
Sbjct: 60 LLDDDDSMDPQDPEDEIQGMEIPAGFHIQEAKPVVLERLLLRRGVLVRLGMGWFGGLITQQSQKDIRHLYDYCVQLELHQSTRKMKLPLDKYSGDSDAAVGSWVLLE 166
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JYC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC4_9PHAE) HSP 1 Score: 111 bits (277), Expect = 6.820e-25 Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
L+DDDD + E + M IP GFR+Q + P LD L++RG L+ L MG FGGLIT++SQ+ T HVYDY + L+ DQS R +KLPLD YS D + AVG+WVLLE
Sbjct: 303 LVDDDDSMDPQDPEDEIQGMEIPAGFRIQEANPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHVYDYCVQLELDQSTRKIKLPLDKYSRDSDAAVGSWVLLE 409 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig316.8523.1 >prot_H-paniculata_contig316.8523.1 ID=prot_H-paniculata_contig316.8523.1|Name=mRNA_H-paniculata_contig316.8523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVback to top mRNA from alignment at H-paniculata_contig316:1573..3108- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig316.8523.1 ID=mRNA_H-paniculata_contig316.8523.1|Name=mRNA_H-paniculata_contig316.8523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1536bp|location=Sequence derived from alignment at H-paniculata_contig316:1573..3108- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig316:1573..3108- >mRNA_H-paniculata_contig316.8523.1 ID=mRNA_H-paniculata_contig316.8523.1|Name=mRNA_H-paniculata_contig316.8523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig316:1573..3108- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |