mRNA_H-paniculata_contig31589.8521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31589.8521.1
Unique NamemRNA_H-paniculata_contig31589.8521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31589.8521.1 vs. uniprot
Match: UPI00092F1DB2 (uncharacterized protein LOC109362714 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F1DB2)

HSP 1 Score: 66.6 bits (161), Expect = 6.860e-9
Identity = 71/299 (23.75%), Postives = 134/299 (44.82%), Query Frame = 1 
Query:    1 RIEEWEEKYETISMKRGEDPMKLFARTDEIVSVLESLGQTVTESSVNRKLVRALTSDYEMEQRTILYKETVTRSEIEHVVRQ------RYMQLPKSRSVGQALVAESQLGRGFGKGKWRXXXXXKKNSNSGENSSGGKQSNRAGTKSETSLVPEDMRGKCRRCKLPGHFWYECKARVIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPSN-DQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLENVAYVPRLKYNLLSL 876
            +++   ++YE + M+ G+   + F +   I + ++  G+ +T++ V RK++R+L   ++     I   + VT  +IE           R ++    + V QAL A  + G      KW+      +   S E S    +  R+          +  + +C  C   GH+ YEC  +    Q++ ++ + T+ E      + L+ +  +     EF        W  DS  + HMT  KE+++D   +N  +V+  D   +  +  G + I+    NG   + + NV YVP++KYNLLS+
Sbjct:   24 KLQSLRKQYELLHMEEGDKVGEYFTKILTITNQMKGYGEAITDTMVIRKIMRSLLPRFDFIVVAIEESKDVTLMKIEEKQSSLEAHELRLIERNPMKKVEQALKAIHKDGDRRKDKKWKGKQSLNRRKTSQEWSESSDKRGRSKLNYNQKKF-DKSKVECFNCHKLGHYSYEC-GKEKNKQSRHKEEALTTQEDSDSEPLNLMVTDAATKSHSEF--------WYLDSGCSNHMTNHKEWLKDFDSTNRSRVKFADDSSLSAKGAGNVVIM--RENGSKAI-VSNVLYVPKMKYNLLSI 309
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BLAST of mRNA_H-paniculata_contig31589.8521.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 64.7 bits (156), Expect = 3.880e-8
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:  460 CRRCKLPGHFWYECKAR----VIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGF-ETWRSDSAATFHMTGSKEYMRD-IRPSNDQVRIGDYQLIDVECVGTLTI-VFPSVNGE--VTLRLENVAYVPRLKYNLLSL 876
            C  CK  GH W  C  R       A+    + + ++ E+ + +   L++SS          L  G  + W  DS A++HM+G KE+  + ++     +R+GD ++++    GT+ I VF   NGE  V + L NV ++P LKYNL S+
Sbjct:  230 CTYCKKTGHLWKSCYKRKNDEADKAKQPKGEVADSTHEEGTFIHELLMASS----------LPKGLSDKWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVF---NGESWVKMSLNNVLFIPELKYNLFSM 364
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BLAST of mRNA_H-paniculata_contig31589.8521.1 vs. uniprot
Match: UPI00092E79E4 (uncharacterized protein LOC109352893 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E79E4)

HSP 1 Score: 63.9 bits (154), Expect = 6.760e-8
Identity = 65/299 (21.74%), Postives = 132/299 (44.15%), Query Frame = 1 
Query:    1 RIEEWEEKYETISMKRGEDPMKLFARTDEIVSVLESLGQTVTESSVNRKLVRALTSDYEMEQRTILYKETVTRSEIEHVVRQ------RYMQLPKSRSVGQALVAESQLGRGFGKGKWRXXXXXKKNSNSGENSSGGKQSNRAGTKSETSLVPEDMRGKCRRCKLPGHFWYECKARVIPAQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPSN-DQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLENVAYVPRLKYNLLSL 876
            +++   ++YE + M+ G+   + F +   I + ++  G+ +T++ +  K++R+L   ++     I   + VT  +IE +         R ++    +   QAL A  +        +W+      +   S E S   + S++ G         +  + +C  C   GH+ YEC           ++A +T  +  S     +++++ + +           E W  DS  + HMT  KE+++D   +   +V+  D   +  E  G++ I+    NG   + + NV YVP++KYNLLS+
Sbjct:   93 KLQSLRKQYELLHMEEGDKVGEYFTKILTITNQMKGYGEAITDTMIIEKIMRSLLPRFDFIVVAIEESKDVTLMKIEELQSSLEAHELRLIERNPRKKAEQALKATHKDNDRRKDKRWKGKQNFNRRKTSQEWS---ESSDKRGRSKFNQKKFDKSKVECFNCHKLGHYSYECSNEKNKQSRHKEEALTTQEDSDSEPLNLMVTNTATRSHS---------ELWYLDSGCSNHMTNHKEWLKDFDSTKKSRVKFADDSSLSAEGAGSVVIM--RKNGSKAI-VSNVLYVPKMKYNLLSI 376
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BLAST of mRNA_H-paniculata_contig31589.8521.1 vs. uniprot
Match: UPI0010172210 (uncharacterized protein LOC114170345 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI0010172210)

HSP 1 Score: 56.2 bits (134), Expect = 1.490e-6
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:  640 GFETWRSDSAATFHMTGSKEYMRDIRPS-NDQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLENVAYVPRLKYNLLS 873
            G E W  D+  + HMTG KE++ +I  S ++++++ D  +I  E VG + I     +G+ T+ +E+V YVP +KYNLLS
Sbjct:   10 GRENWFLDTRCSNHMTGHKEWLSNIDTSRSNKIKLADDNMIRAEGVGNVVI---KKDGKETMVIEDVLYVPGIKYNLLS 85
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BLAST of mRNA_H-paniculata_contig31589.8521.1 vs. uniprot
Match: A0A6D2J390_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J390_9BRAS)

HSP 1 Score: 55.5 bits (132), Expect = 4.370e-5
Identity = 43/146 (29.45%), Postives = 72/146 (49.32%), Query Frame = 1 
Query:  457 KCRRCKLPGHFWYECKARVIP-----AQTQVQDASSTSGEQVSGVSVALISSSGSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPS-NDQVRIGDYQLIDVECVGTLTIVFPSVNGEVTLRLENVAYVPRLKYNLLSL 876
            +C RC   GH+  +C  R++      AQ    +  +   E++    V ++          E   + G   W  D+ A+ HMTG++ Y ++I  S   +VR GD   +D++  G+  I+F S NGE  + L +V ++P LK N+ SL
Sbjct:  223 ECYRCDKYGHYASDCPDRLLKLKLQEAQENEDNNDTQEAEKLMMHEVVMLKERNVKQKDFEANSD-GDNVWYLDNGASNHMTGNRNYFKEIDESMTGKVRFGDDSRLDIKGKGS--ILFYSKNGEKKM-LADVYFIPELKSNITSL 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31589.8521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00092F1DB26.860e-923.75uncharacterized protein LOC109362714 n=1 Tax=Lupin... [more]
UPI001CDB8C503.880e-831.08uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
UPI00092E79E46.760e-821.74uncharacterized protein LOC109352893 n=2 Tax=Lupin... [more]
UPI00101722101.490e-639.24uncharacterized protein LOC114170345 n=1 Tax=Vigna... [more]
A0A6D2J390_9BRAS4.370e-529.45CCHC-type domain-containing protein n=1 Tax=Microt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31589contigH-paniculata_contig31589:1028..1903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size876
Cds size876
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.3169692-CDS-H-paniculata_contig31589:1027..19031622929973.3169692-CDS-H-paniculata_contig31589:1027..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31589 1028..1903 -
1691481093.2756095-CDS-H-paniculata_contig31589:1027..19031691481093.2756095-CDS-H-paniculata_contig31589:1027..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31589 1028..1903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31589.8521.1prot_H-paniculata_contig31589.8521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31589 1028..1903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31589.8521.1

>prot_H-paniculata_contig31589.8521.1 ID=prot_H-paniculata_contig31589.8521.1|Name=mRNA_H-paniculata_contig31589.8521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp
RIEEWEEKYETISMKRGEDPMKLFARTDEIVSVLESLGQTVTESSVNRKL
VRALTSDYEMEQRTILYKETVTRSEIEHVVRQRYMQLPKSRSVGQALVAE
SQLGRGFGKGKWRGRGFGKKNSNSGENSSGGKQSNRAGTKSETSLVPEDM
RGKCRRCKLPGHFWYECKARVIPAQTQVQDASSTSGEQVSGVSVALISSS
GSHNDGDEFGLETGFETWRSDSAATFHMTGSKEYMRDIRPSNDQVRIGDY
QLIDVECVGTLTIVFPSVNGEVTLRLENVAYVPRLKYNLLSL
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mRNA from alignment at H-paniculata_contig31589:1028..1903-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31589.8521.1 ID=mRNA_H-paniculata_contig31589.8521.1|Name=mRNA_H-paniculata_contig31589.8521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at H-paniculata_contig31589:1028..1903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATAGAAGAGTGGGAAGAAAAGTACGAGACAATTTCGATGAAACGGGG
CGAAGATCCCATGAAATTGTTCGCCCGCACAGACGAGATCGTTTCTGTAC
TGGAGTCACTAGGACAGACTGTAACAGAGTCAAGCGTGAATCGGAAGTTA
GTTCGAGCTTTGACATCGGACTATGAGATGGAACAGCGCACAATTCTCTA
CAAAGAGACTGTAACAAGGTCAGAAATTGAGCACGTAGTAAGACAAAGGT
ACATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGAG
TCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGTT
TGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAGA
GTAACCGGGCTGGTACAAAGAGTGAAACTTCATTGGTTCCGGAAGACATG
AGAGGGAAGTGTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGTG
CAAGGCGCGTGTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGCA
CCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTCT
GGGAGTCACAATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGAC
GTGGAGAAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAAGAGT
ATATGAGAGACATACGCCCGTCCAACGACCAGGTCCGAATAGGAGACTAT
CAACTCATTGATGTGGAGTGTGTAGGTACTTTAACTATTGTCTTTCCGAG
TGTGAACGGTGAAGTAACCCTGAGACTGGAAAACGTGGCGTATGTTCCAA
GGTTAAAGTACAATCTGCTGTCTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig31589:1028..1903-

>mRNA_H-paniculata_contig31589.8521.1 ID=mRNA_H-paniculata_contig31589.8521.1|Name=mRNA_H-paniculata_contig31589.8521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig31589:1028..1903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATAGAAGAGTGGGAAGAAAAGTACGAGACAATTTCGATGAAACGGGG
CGAAGATCCCATGAAATTGTTCGCCCGCACAGACGAGATCGTTTCTGTAC
TGGAGTCACTAGGACAGACTGTAACAGAGTCAAGCGTGAATCGGAAGTTA
GTTCGAGCTTTGACATCGGACTATGAGATGGAACAGCGCACAATTCTCTA
CAAAGAGACTGTAACAAGGTCAGAAATTGAGCACGTAGTAAGACAAAGGT
ACATGCAGCTCCCAAAATCTAGGAGTGTGGGTCAGGCTCTTGTAGCCGAG
TCACAGCTGGGACGTGGTTTTGGAAAAGGAAAATGGCGCGGCAGAGGGTT
TGGGAAAAAGAACAGCAATAGCGGAGAAAATTCCTCGGGTGGTAAGCAGA
GTAACCGGGCTGGTACAAAGAGTGAAACTTCATTGGTTCCGGAAGACATG
AGAGGGAAGTGTAGACGATGCAAGCTGCCGGGACATTTTTGGTACGAGTG
CAAGGCGCGTGTCATCCCTGCGCAGACTCAGGTGCAAGATGCATCAAGCA
CCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAGCAGTTCT
GGGAGTCACAATGATGGTGATGAATTTGGGCTAGAGACGGGTTTTGAGAC
GTGGAGAAGTGATAGTGCAGCTACGTTTCACATGACCGGTTCAAAAGAGT
ATATGAGAGACATACGCCCGTCCAACGACCAGGTCCGAATAGGAGACTAT
CAACTCATTGATGTGGAGTGTGTAGGTACTTTAACTATTGTCTTTCCGAG
TGTGAACGGTGAAGTAACCCTGAGACTGGAAAACGTGGCGTATGTTCCAA
GGTTAAAGTACAATCTGCTGTCTCTGCGGATAGAAGAGTGGGAAGAAAAG
TACGAGACAATTTCGATGAAACGGGGCGAAGATCCCATGAAATTGTTCGC
CCGCACAGACGAGATCGTTTCTGTACTGGAGTCACTAGGACAGACTGTAA
CAGAGTCAAGCGTGAATCGGAAGTTAGTTCGAGCTTTGACATCGGACTAT
GAGATGGAACAGCGCACAATTCTCTACAAAGAGACTGTAACAAGGTCAGA
AATTGAGCACGTAGTAAGACAAAGGTACATGCAGCTCCCAAAATCTAGGA
GTGTGGGTCAGGCTCTTGTAGCCGAGTCACAGCTGGGACGTGGTTTTGGA
AAAGGAAAATGGCGCGGCAGAGGGTTTGGGAAAAAGAACAGCAATAGCGG
AGAAAATTCCTCGGGTGGTAAGCAGAGTAACCGGGCTGGTACAAAGAGTG
AAACTTCATTGGTTCCGGAAGACATGAGAGGGAAGTGTAGACGATGCAAG
CTGCCGGGACATTTTTGGTACGAGTGCAAGGCGCGTGTCATCCCTGCGCA
GACTCAGGTGCAAGATGCATCAAGCACCAGCGGTGAGCAAGTGTCTGGTG
TCTCTGTTGCGTTGATTAGCAGTTCTGGGAGTCACAATGATGGTGATGAA
TTTGGGCTAGAGACGGGTTTTGAGACGTGGAGAAGTGATAGTGCAGCTAC
GTTTCACATGACCGGTTCAAAAGAGTATATGAGAGACATACGCCCGTCCA
ACGACCAGGTCCGAATAGGAGACTATCAACTCATTGATGTGGAGTGTGTA
GGTACTTTAACTATTGTCTTTCCGAGTGTGAACGGTGAAGTAACCCTGAG
ACTGGAAAACGTGGCGTATGTTCCAAGGTTAAAGTACAATCTGCTGTCTC
TG
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