mRNA_H-paniculata_contig31587.8519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: D7FMY4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMY4_ECTSI) HSP 1 Score: 120 bits (302), Expect = 4.070e-32 Identity = 53/77 (68.83%), Postives = 69/77 (89.61%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSHAAKVIR 231
+VEPYYCM+WVLTWF+HDL+D +V+R+YDVLLGAH TL+LYI AAVVI+AR E+L CDC+F++VH+ LSHAAK ++
Sbjct: 23 KVEPYYCMSWVLTWFSHDLQDQKSVSRLYDVLLGAHPTLVLYICAAVVITAREEVLACDCEFSAVHNTLSHAAKGVK 99
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE) HSP 1 Score: 120 bits (301), Expect = 3.110e-30 Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSHAAKVIR 231
+VEPYYCM+WVLTWF+HDL+D V+R+YDVLLGAH TL+LYI AAVVI+AR E+L CDC+F++VH+ LSHAAK ++
Sbjct: 297 KVEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVVITAREEVLACDCEFSAVHNTLSHAAKGVK 373
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A1V9ZRE5_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRE5_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.070e-18 Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 4 VEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSHAA 219
V+PY+ + WV+TWFAH L+ F V R+YD+LL +H LY+SA++V+ R ILECDCD+A +H+ LS A
Sbjct: 229 VDPYFALPWVITWFAHHLKTFDQVCRLYDILLCSHPMFSLYLSASLVLHHRKRILECDCDYAEMHTVLSKLA 300
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A6A3MET7_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MET7_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.870e-17 Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 4 VEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSH 213
VEPY+ + W++TWFAH LR F V R+YDV L +H LY+SAAV+++AR +IL C+ DF ++H LS+
Sbjct: 229 VEPYFALPWMITWFAHQLRRFRDVVRLYDVFLVSHPLFSLYVSAAVLLNARDKILRCERDFGTMHGMLSN 298
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A3M6VJ51_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ51_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.110e-16 Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSH 213
+VEP++ + W++TWFAH L+ F V R+YDV L H LY+SA+V++ +R +IL C+CDF ++H LS+
Sbjct: 235 EVEPFFALPWMITWFAHQLKRFEDVARLYDVFLVTHPLFSLYVSASVLLESREKILRCECDFGTMHGMLSN 305
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A7S2UI93_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI93_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.390e-16 Identity = 34/72 (47.22%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISA--RSEILECDCDFASVHSALS 210
Q+EP++ ++W++TWF+HD+RD V R++DV + +H +++Y+S A+++ R EILE DCDFASVH+AL+
Sbjct: 277 QMEPFFALSWIITWFSHDVRDTEMVKRLFDVFIVSHPLMVIYMSVAMILHPVNRIEILETDCDFASVHNALA 348
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: K0T1I1_THAOC (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1I1_THAOC) HSP 1 Score: 81.6 bits (200), Expect = 2.620e-16 Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISA--RSEILECDCDFASVHSALSHAAK 222
++EPY+C++W++TWF+HD+RD + R+YD + +H L++Y+S A+++ R E+L DCDFA VH+AL+ K
Sbjct: 416 EMEPYFCLSWIITWFSHDIRDTSLIKRLYDCFIVSHPLLVVYMSVAMMVHPLNRLEVLGVDCDFACVHNALAELPK 491
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: H3HBN8_PHYRM (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBN8_PHYRM) HSP 1 Score: 80.5 bits (197), Expect = 4.650e-16 Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 4 VEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSH 213
VEP++ + W++TWFAH LR F V R+YDV L H LY+SAAVV+ +R +IL C+ DF ++H LS+
Sbjct: 212 VEPFFALPWLITWFAHQLRRFQDVARLYDVFLVTHPLFSLYVSAAVVLESREKILRCERDFGTMHGMLSN 281
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A1Y1XWA4_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XWA4_9FUNG) HSP 1 Score: 80.5 bits (197), Expect = 4.930e-16 Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALS 210
+ PY+C++WVLTW +HDL DF VTR++D L + +Y +A+VV+S + E+L+C+C++A VH+ LS
Sbjct: 199 ETPPYFCLSWVLTWCSHDLNDFSKVTRLFDFFLSVNPLAPVYFAASVVLSRKDELLDCECEYAMVHTFLS 268
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A7S2S3D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3D0_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 6.740e-16 Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVI--SARSEILECDCDFASVHSALSHAAK 222
Q+EP++ + W++TWF+HD+RD V R++DV + +H + +Y+S A+V+ S R+E+L +CDFA VH AL+ K
Sbjct: 62 QMEPFFALPWIITWFSHDIRDTDLVKRLFDVFIVSHPLMPIYMSIAMVLHPSNRNEVLNTECDFACVHQALADLPK 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig31587.8519.1 >prot_H-paniculata_contig31587.8519.1 ID=prot_H-paniculata_contig31587.8519.1|Name=mRNA_H-paniculata_contig31587.8519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp MAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILEback to top mRNA from alignment at H-paniculata_contig31587:113..1058+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig31587.8519.1 ID=mRNA_H-paniculata_contig31587.8519.1|Name=mRNA_H-paniculata_contig31587.8519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=946bp|location=Sequence derived from alignment at H-paniculata_contig31587:113..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig31587:113..1058+ >mRNA_H-paniculata_contig31587.8519.1 ID=mRNA_H-paniculata_contig31587.8519.1|Name=mRNA_H-paniculata_contig31587.8519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig31587:113..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |