mRNA_H-paniculata_contig31587.8519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31587.8519.1
Unique NamemRNA_H-paniculata_contig31587.8519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: D7FMY4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMY4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.070e-32
Identity = 53/77 (68.83%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSHAAKVIR 231
            +VEPYYCM+WVLTWF+HDL+D  +V+R+YDVLLGAH TL+LYI AAVVI+AR E+L CDC+F++VH+ LSHAAK ++
Sbjct:   23 KVEPYYCMSWVLTWFSHDLQDQKSVSRLYDVLLGAHPTLVLYICAAVVITAREEVLACDCEFSAVHNTLSHAAKGVK 99          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.110e-30
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSHAAKVIR 231
            +VEPYYCM+WVLTWF+HDL+D   V+R+YDVLLGAH TL+LYI AAVVI+AR E+L CDC+F++VH+ LSHAAK ++
Sbjct:  297 KVEPYYCMSWVLTWFSHDLQDQKTVSRLYDVLLGAHPTLVLYICAAVVITAREEVLACDCEFSAVHNTLSHAAKGVK 373          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A1V9ZRE5_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRE5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.070e-18
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    4 VEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSHAA 219
            V+PY+ + WV+TWFAH L+ F  V R+YD+LL +H    LY+SA++V+  R  ILECDCD+A +H+ LS  A
Sbjct:  229 VDPYFALPWVITWFAHHLKTFDQVCRLYDILLCSHPMFSLYLSASLVLHHRKRILECDCDYAEMHTVLSKLA 300          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A6A3MET7_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MET7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.870e-17
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    4 VEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSH 213
            VEPY+ + W++TWFAH LR F  V R+YDV L +H    LY+SAAV+++AR +IL C+ DF ++H  LS+
Sbjct:  229 VEPYFALPWMITWFAHQLRRFRDVVRLYDVFLVSHPLFSLYVSAAVLLNARDKILRCERDFGTMHGMLSN 298          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A3M6VJ51_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ51_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-16
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSH 213
            +VEP++ + W++TWFAH L+ F  V R+YDV L  H    LY+SA+V++ +R +IL C+CDF ++H  LS+
Sbjct:  235 EVEPFFALPWMITWFAHQLKRFEDVARLYDVFLVTHPLFSLYVSASVLLESREKILRCECDFGTMHGMLSN 305          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A7S2UI93_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI93_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.390e-16
Identity = 34/72 (47.22%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISA--RSEILECDCDFASVHSALS 210
            Q+EP++ ++W++TWF+HD+RD   V R++DV + +H  +++Y+S A+++    R EILE DCDFASVH+AL+
Sbjct:  277 QMEPFFALSWIITWFSHDVRDTEMVKRLFDVFIVSHPLMVIYMSVAMILHPVNRIEILETDCDFASVHNALA 348          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: K0T1I1_THAOC (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1I1_THAOC)

HSP 1 Score: 81.6 bits (200), Expect = 2.620e-16
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISA--RSEILECDCDFASVHSALSHAAK 222
            ++EPY+C++W++TWF+HD+RD   + R+YD  + +H  L++Y+S A+++    R E+L  DCDFA VH+AL+   K
Sbjct:  416 EMEPYFCLSWIITWFSHDIRDTSLIKRLYDCFIVSHPLLVVYMSVAMMVHPLNRLEVLGVDCDFACVHNALAELPK 491          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: H3HBN8_PHYRM (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBN8_PHYRM)

HSP 1 Score: 80.5 bits (197), Expect = 4.650e-16
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 VEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALSH 213
            VEP++ + W++TWFAH LR F  V R+YDV L  H    LY+SAAVV+ +R +IL C+ DF ++H  LS+
Sbjct:  212 VEPFFALPWLITWFAHQLRRFQDVARLYDVFLVTHPLFSLYVSAAVVLESREKILRCERDFGTMHGMLSN 281          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A1Y1XWA4_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XWA4_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 4.930e-16
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILECDCDFASVHSALS 210
            +  PY+C++WVLTW +HDL DF  VTR++D  L  +    +Y +A+VV+S + E+L+C+C++A VH+ LS
Sbjct:  199 ETPPYFCLSWVLTWCSHDLNDFSKVTRLFDFFLSVNPLAPVYFAASVVLSRKDELLDCECEYAMVHTFLS 268          
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Match: A0A7S2S3D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3D0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.740e-16
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 QVEPYYCMAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVI--SARSEILECDCDFASVHSALSHAAK 222
            Q+EP++ + W++TWF+HD+RD   V R++DV + +H  + +Y+S A+V+  S R+E+L  +CDFA VH AL+   K
Sbjct:   62 QMEPFFALPWIITWFSHDIRDTDLVKRLFDVFIVSHPLMPIYMSIAMVLHPSNRNEVLNTECDFACVHQALADLPK 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31587.8519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMY4_ECTSI4.070e-3268.83Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JQF1_9PHAE3.110e-3068.83Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A1V9ZRE5_9STRA3.070e-1851.39Rab-GAP TBC domain-containing protein n=1 Tax=Thra... [more]
A0A6A3MET7_9STRA7.870e-1751.43Rab-GAP TBC domain-containing protein n=2 Tax=Phyt... [more]
A0A3M6VJ51_9STRA1.110e-1646.48Rab-GAP TBC domain-containing protein n=2 Tax=Pero... [more]
A0A7S2UI93_9STRA1.390e-1647.22Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0T1I1_THAOC2.620e-1643.42Rab-GAP TBC domain-containing protein (Fragment) n... [more]
H3HBN8_PHYRM4.650e-1650.00Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A1Y1XWA4_9FUNG4.930e-1645.71Rab-GAP TBC domain-containing protein n=1 Tax=Basi... [more]
A0A7S2S3D0_9STRA6.740e-1643.42Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31587contigH-paniculata_contig31587:113..1058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D7FMY4
Preferred nameTBC1D20
KEGG koko:K02332,ko:K20372
KEGG Pathwayko01100,ko04139,map01100,map04139
KEGG ModuleM00294
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0000139,GO:0000902,GO:0000904,GO:0000920,GO:0001654,GO:0001675,GO:0002064,GO:0002088,GO:0002089,GO:0003006,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007423,GO:0007548,GO:0008047,GO:0008150,GO:0008406,GO:0008584,GO:0009653,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010927,GO:0012505,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0019058,GO:0019068,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030173,GO:0030234,GO:0030695,GO:0030855,GO:0031090,GO:0031224,GO:0031228,GO:0031267,GO:0031300,GO:0031301,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032989,GO:0033116,GO:0033363,GO:0034389,GO:0034622,GO:0035023,GO:0035295,GO:0035459,GO:0035821,GO:0042175,GO:0042592,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044788,GO:0044794,GO:0044827,GO:0044829,GO:0045069,GO:0045070,GO:0045137,GO:0046546,GO:0046578,GO:0046661,GO:0046719,GO:0046726,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048524,GO:0048583,GO:0048592,GO:0048593,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0051020,GO:0051049,GO:0051050,GO:0051056,GO:0051179,GO:0051234,GO:0051301,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0060341,GO:0060429,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070306,GO:0070307,GO:0070309,GO:0070925,GO:0071840,GO:0072520,GO:0090110,GO:0090114,GO:0090596,GO:0098588,GO:0098772,GO:0098791,GO:0098827,GO:1902531,GO:1902953,GO:1903900,GO:1903902
EggNOG free text desc.positive regulation of ER to Golgi vesicle-mediated transport
EggNOG OGsKOG2595@1,KOG2595@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko04131
Exons2
Model size237
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31587.8519.1prot_H-paniculata_contig31587.8519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31587 134..1058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.1332948-UTR-H-paniculata_contig31587:112..1331622929973.1332948-UTR-H-paniculata_contig31587:112..133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31587 113..133 +
1691481093.1964867-UTR-H-paniculata_contig31587:112..1331691481093.1964867-UTR-H-paniculata_contig31587:112..133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31587 113..133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.1500943-CDS-H-paniculata_contig31587:133..2501622929973.1500943-CDS-H-paniculata_contig31587:133..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 134..250 +
1691481093.2120228-CDS-H-paniculata_contig31587:133..2501691481093.2120228-CDS-H-paniculata_contig31587:133..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 134..250 +
1622929973.1722314-CDS-H-paniculata_contig31587:959..10581622929973.1722314-CDS-H-paniculata_contig31587:959..1058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 960..1058 +
1691481093.220452-CDS-H-paniculata_contig31587:959..10581691481093.220452-CDS-H-paniculata_contig31587:959..1058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 960..1058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31587.8519.1

>prot_H-paniculata_contig31587.8519.1 ID=prot_H-paniculata_contig31587.8519.1|Name=mRNA_H-paniculata_contig31587.8519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MAWVLTWFAHDLRDFHAVTRIYDVLLGAHATLILYISAAVVISARSEILE
CDCDFASVHSALSHAAKVIRR*
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mRNA from alignment at H-paniculata_contig31587:113..1058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31587.8519.1 ID=mRNA_H-paniculata_contig31587.8519.1|Name=mRNA_H-paniculata_contig31587.8519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=946bp|location=Sequence derived from alignment at H-paniculata_contig31587:113..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGAGCCATACTACTGTATGGCGTGGGTGCTAACGTGGTTCGCGCA CGATCTGAGGGATTTCCATGCTGTGACCAGGATTTATGATGTGCTCCTTG GAGCACATGCCACTCTTATCCTTTACATTTCGGCAGCGGTGAGAGGTTTT TGACGCCTTTATGTTTCATGCTGTATGAAGATAAAAATGGAACAAGACGT CATGTGTTATTAATTCGTTCTGTGAGATTATGGTCTAATGGTCTTGGTAG TCGTTTTTGAATAGTTATCGATTCTGTGCCTGACTATCCCCTAAAAAATG GATCTTTATGCGAGCGAAGCGAGTCCGTGGGTGTGTCAGGGACGAACGCG AACTGCATGGGCGTATTAGCTATAGCCTCGGTTCTACTAAAAGTATATAT ATATAGAGAGAGATGATCTATTTATCTTGTTAGCGATTAGAGCGTCTTCA CACACGGCTGAGTTGGATGCTTCCATCGACAAACATTTTAGCAAGAGTAG TTCATGATCGGACAAAATTTCGGAAGGATGTTTTGTCTGTTGAGCGAGAG ATACATACTATTCGACAAAGGTTCGCAGGGTCATGCATGCTCCTCGCAAT ATCCGTGTAGACTCGATTTTACAAATTTAGCTACTTGAGCGAAGATGTGA AAAACCGACCCGGAATAAATGAACAGTTTCGATATGACACGTATTCCAAT AGCCTTCCGAATGTATTGTTCTGCTGGTGCTGGATTCCGTCAAAGCTCTG ATTCTCTCTCCATGTCCTTTTGATTTATTCTTGCCCTCCCTCCTACCCCT CTCGTGCCATTCCGTTTTGTGTGTGTGTGTGTGTGTGTGTTTCGCAGGTG GTGATTTCTGCGCGGAGTGAAATTTTGGAGTGTGACTGCGACTTCGCTTC TGTACATAGTGCCCTTTCACACGCGGCAAAGGTAATTAGAAGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31587:113..1058+

>mRNA_H-paniculata_contig31587.8519.1 ID=mRNA_H-paniculata_contig31587.8519.1|Name=mRNA_H-paniculata_contig31587.8519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig31587:113..1058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTGGGTGCTAACGTGGTTCGCGCACGATCTGAGGGATTTCCATGC
TGTGACCAGGATTTATGATGTGCTCCTTGGAGCACATGCCACTCTTATCC
TTTACATTTCGGCAGCGATGGCGTGGGTGCTAACGTGGTTCGCGCACGAT
CTGAGGGATTTCCATGCTGTGACCAGGATTTATGATGTGCTCCTTGGAGC
ACATGCCACTCTTATCCTTTACATTTCGGCAGCGGTGGTGATTTCTGCGC
GGAGTGAAATTTTGGAGTGTGACTGCGACTTCGCTTCTGTACATAGTGCC
CTTTCACACGCGGCAAAGGTAATTAGAAGATAGGTGGTGATTTCTGCGCG
GAGTGAAATTTTGGAGTGTGACTGCGACTTCGCTTCTGTACATAGTGCCC
TTTCACACGCGGCAAAGGTAATTAGAAGATAG
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