mRNA_H-paniculata_contig31550.8515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31550.8515.1
Unique NamemRNA_H-paniculata_contig31550.8515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.160e-22
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    7 QVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            +VEEYLAKVVQLFSYLTDKDLFAEIYRNQLA+RLLN RSASDDMERLMIG+L  K  + F +   G +N + +
Sbjct:  414 EVEEYLAKVVQLFSYLTDKDLFAEIYRNQLARRLLNSRSASDDMERLMIGKLKLKCGSQFTSKMEGMMNDLAI 486          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.560e-21
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    7 QVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            +VEEYL KVVQLFSYLTDKDLFAE+YR QLAKRLLNQRSASDD ERLMIG+L  K  + F +   G +N + +
Sbjct:  416 EVEEYLGKVVQLFSYLTDKDLFAEMYRQQLAKRLLNQRSASDDAERLMIGKLKLKCGSQFTSKMEGMMNDLAI 488          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: D7FJN2_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 9.870e-21
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   10 VEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            VEEYLAKVVQLFSYL DKDLFA+IYRNQLA+RLLN RSASDDMERLMIG+L  K  + F     G +N + +
Sbjct:  148 VEEYLAKVVQLFSYLADKDLFAKIYRNQLARRLLNSRSASDDMERLMIGKLKLKCGSQFTFKMEGMMNDLAI 219          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 2.300e-20
Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            + VE YL K VQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDD ERLMIG+L  +  + F     G +N + +
Sbjct:  411 EDVESYLEKTVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAERLMIGKLKLRCGSQFTGKMEGMLNDLAI 484          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.860e-20
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            +++E YL K VQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDD E+LMIG+L  +  + F     G +N + +
Sbjct:  411 EEIEAYLEKTVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAEKLMIGKLKLRCGSQFTGKMEGMLNDLAI 484          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: A0A8J2SP16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP16_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.090e-19
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            + VE +L K VQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDD ERLMIG+L  +  + F     G +N + +
Sbjct:  415 EDVEAFLEKTVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAERLMIGKLKLRCGSQFTGKMEGMLNDLAI 488          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: M4BNM2_HYAAE (CULLIN_2 domain-containing protein n=26 Tax=Peronosporaceae TaxID=4777 RepID=M4BNM2_HYAAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.790e-19
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            +QVE+YL KVV +FSYLTDKDLFAEIYRNQLAKRLLNQRSASDD E LMIG+L  +    F     G +N + +
Sbjct:  407 EQVEDYLEKVVFVFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAEVLMIGKLKLRCGAQFTGKMEGMMNDLAI 480          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: A0A7S3ZYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYF8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.510e-19
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGEL 162
            + VE +L K VQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDD ERLMIG+L
Sbjct:  415 EDVEAFLEKTVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAERLMIGKL 467          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: A0A7S2WAA5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAA5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-18
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITL 225
            ++VE +L K VQLFSYL DKDLFAEIYRNQLAKRLLNQRSASDD ERLMI +L  +  + F     G +N + +
Sbjct:  410 EEVETFLEKTVQLFSYLVDKDLFAEIYRNQLAKRLLNQRSASDDHERLMISKLKQRCGSQFTGKMEGMLNDLAI 483          
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Match: F0WS96_9STRA (Putative cullin putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WS96_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-18
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    4 KQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLMIGELTGKVLTIFCNSDIGRVNAITLDT 231
            +QVE YL KVV +FSY+ DKDLFAEIYRNQLAKRLLNQRSAS D E LMIG+L  +    F +   G +N +T+ T
Sbjct:  414 EQVETYLEKVVSVFSYMIDKDLFAEIYRNQLAKRLLNQRSASTDAELLMIGKLKLRCGAQFTSKMEGMMNDLTIGT 489          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31550.8515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE1.160e-2271.23CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YLK2_9STRA3.560e-2168.49Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
D7FJN2_ECTSI9.870e-2169.44CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
F0XVV7_AURAN2.300e-2066.22CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S3JSF7_9STRA5.860e-2063.51Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2SP16_9STRA1.090e-1964.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
M4BNM2_HYAAE3.790e-1964.86CULLIN_2 domain-containing protein n=26 Tax=Perono... [more]
A0A7S3ZYF8_9STRA4.510e-1984.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WAA5_9STRA1.320e-1862.16Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0WS96_9STRA1.320e-1861.84Putative cullin putative n=1 Tax=Albugo laibachii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31550contigH-paniculata_contig31550:1808..2068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue5.2e-19
Seed eggNOG ortholog2880.D7FY17
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons1
Model size261
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.3876414-CDS-H-paniculata_contig31550:1807..20681622929972.3876414-CDS-H-paniculata_contig31550:1807..2068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31550 1808..2068 +
1691481092.7983565-CDS-H-paniculata_contig31550:1807..20681691481092.7983565-CDS-H-paniculata_contig31550:1807..2068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31550 1808..2068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31550.8515.1prot_H-paniculata_contig31550.8515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31550 1808..2068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31550.8515.1

>prot_H-paniculata_contig31550.8515.1 ID=prot_H-paniculata_contig31550.8515.1|Name=mRNA_H-paniculata_contig31550.8515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MKQVEEYLAKVVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDMERLM
IGELTGKVLTIFCNSDIGRVNAITLDTFCLCFVIQE*
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mRNA from alignment at H-paniculata_contig31550:1808..2068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31550.8515.1 ID=mRNA_H-paniculata_contig31550.8515.1|Name=mRNA_H-paniculata_contig31550.8515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig31550:1808..2068+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGGTGGAGGAATACCTCGCAAAGGTGGTGCAGCTATTCTCGTA CCTGACAGACAAAGATCTGTTCGCGGAGATCTACCGCAATCAGCTGGCGA AGCGGCTGCTTAACCAACGTTCGGCTTCGGATGATATGGAGAGGCTGATG ATCGGTGAGTTAACAGGGAAGGTGTTGACTATATTTTGTAATTCGGATAT AGGTAGAGTTAATGCGATAACACTCGACACTTTTTGCCTATGTTTTGTTA TACAGGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31550:1808..2068+

>mRNA_H-paniculata_contig31550.8515.1 ID=mRNA_H-paniculata_contig31550.8515.1|Name=mRNA_H-paniculata_contig31550.8515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig31550:1808..2068+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGGTGGAGGAATACCTCGCAAAGGTGGTGCAGCTATTCTCGTA
CCTGACAGACAAAGATCTGTTCGCGGAGATCTACCGCAATCAGCTGGCGA
AGCGGCTGCTTAACCAACGTTCGGCTTCGGATGATATGGAGAGGCTGATG
ATCGGTGAGTTAACAGGGAAGGTGTTGACTATATTTTGTAATTCGGATAT
AGGTAGAGTTAATGCGATAACACTCGACACTTTTTGCCTATGTTTTGTTA
TACAGGAGTGAATGAAACAGGTGGAGGAATACCTCGCAAAGGTGGTGCAG
CTATTCTCGTACCTGACAGACAAAGATCTGTTCGCGGAGATCTACCGCAA
TCAGCTGGCGAAGCGGCTGCTTAACCAACGTTCGGCTTCGGATGATATGG
AGAGGCTGATGATCGGTGAGTTAACAGGGAAGGTGTTGACTATATTTTGT
AATTCGGATATAGGTAGAGTTAATGCGATAACACTCGACACTTTTTGCCT
ATGTTTTGTTATACAGGAGTGA
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