mRNA_H-paniculata_contig31543.8513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31543.8513.1
Unique NamemRNA_H-paniculata_contig31543.8513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31543.8513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31543contigH-paniculata_contig31543:1951..2439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.1581817-CDS-H-paniculata_contig31543:1950..22881622929972.1581817-CDS-H-paniculata_contig31543:1950..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31543 1951..2288 -
1691481092.6809685-CDS-H-paniculata_contig31543:1950..22881691481092.6809685-CDS-H-paniculata_contig31543:1950..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31543 1951..2288 -
1622929972.175293-CDS-H-paniculata_contig31543:2333..24391622929972.175293-CDS-H-paniculata_contig31543:2333..2439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31543 2334..2439 -
1691481092.6923976-CDS-H-paniculata_contig31543:2333..24391691481092.6923976-CDS-H-paniculata_contig31543:2333..2439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31543 2334..2439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31543.8513.1prot_H-paniculata_contig31543.8513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31543 1951..2439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31543.8513.1

>prot_H-paniculata_contig31543.8513.1 ID=prot_H-paniculata_contig31543.8513.1|Name=mRNA_H-paniculata_contig31543.8513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
AESQPGRGSGRKKWRGRGSGKKNSNSGEHSTDSKQNMKEKCRRCDLPGHF
WFECKARVISAQTQVQDASSTSGEQVSGVSVALINSSGSHNDGDEFGLET
GFETWRSDSAATFNMTGSKEYVSNARPSNDHVRIGDYQRIDVEFVGN*
back to top

mRNA from alignment at H-paniculata_contig31543:1951..2439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31543.8513.1 ID=mRNA_H-paniculata_contig31543.8513.1|Name=mRNA_H-paniculata_contig31543.8513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig31543:1951..2439- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGAGTCACAGCCGGGGCGTGGTTCTGGAAGAAAGAAATGGCGCGGCAG
AGGGTCTGGGAAAAAGAACAGCAATAGCGGAGAACATTCCACGGATAGTA
AGCAGAGTAGCGGGGATGGTGCAAAGAGTGAAACTTCATCGGTTCCGGAA
GACATGAAAGAGAAGTGTAGAAGATGCGATCTGCCGGGGCATTTTTGGTT
CGAGTGCAAGGCGCGTGTCATCTCTGCGCAGACTCAGGTGCAAGATGCAT
CAAGCACCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAAC
AGTTCTGGGAGTCACAATGATGGCGATGAATTTGGGCTAGAGACGGGATT
CGAGACGTGGAGAAGTGATAGTGCTGCTACGTTTAATATGACCGGTTCAA
AAGAGTACGTGAGTAACGCACGCCCATCTAACGACCATGTCCGAATAGGA
GACTATCAACGCATTGATGTGGAGTTTGTAGGTAATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31543:1951..2439-

>mRNA_H-paniculata_contig31543.8513.1 ID=mRNA_H-paniculata_contig31543.8513.1|Name=mRNA_H-paniculata_contig31543.8513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig31543:1951..2439- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGAGTCACAGCCGGGGCGTGGTTCTGGAAGAAAGAAATGGCGCGGCAG
AGGGTCTGGGAAAAAGAACAGCAATAGCGGAGAACATTCCACGGATAGTA
AGCAGAGCCGAGTCACAGCCGGGGCGTGGTTCTGGAAGAAAGAAATGGCG
CGGCAGAGGGTCTGGGAAAAAGAACAGCAATAGCGGAGAACATTCCACGG
ATAGTAAGCAGAACATGAAAGAGAAGTGTAGAAGATGCGATCTGCCGGGG
CATTTTTGGTTCGAGTGCAAGGCGCGTGTCATCTCTGCGCAGACTCAGGT
GCAAGATGCATCAAGCACCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTG
CGTTGATTAACAGTTCTGGGAGTCACAATGATGGCGATGAATTTGGGCTA
GAGACGGGATTCGAGACGTGGAGAAGTGATAGTGCTGCTACGTTTAATAT
GACCGGTTCAAAAGAGTACGTGAGTAACGCACGCCCATCTAACGACCATG
TCCGAATAGGAGACTATCAACGCATTGATGTGGAGTTTGTAGGTAATTGA
ACATGAAAGAGAAGTGTAGAAGATGCGATCTGCCGGGGCATTTTTGGTTC
GAGTGCAAGGCGCGTGTCATCTCTGCGCAGACTCAGGTGCAAGATGCATC
AAGCACCAGCGGTGAGCAAGTGTCTGGTGTCTCTGTTGCGTTGATTAACA
GTTCTGGGAGTCACAATGATGGCGATGAATTTGGGCTAGAGACGGGATTC
GAGACGTGGAGAAGTGATAGTGCTGCTACGTTTAATATGACCGGTTCAAA
AGAGTACGTGAGTAACGCACGCCCATCTAACGACCATGTCCGAATAGGAG
ACTATCAACGCATTGATGTGGAGTTTGTAGGTAATTGA
back to top