mRNA_H-paniculata_contig315.8503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig315.8503.1
Unique NamemRNA_H-paniculata_contig315.8503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig315.8503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig315contigH-paniculata_contig315:17056..21793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size992
Cds size990
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig315.8503.1prot_H-paniculata_contig315.8503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig315 17057..21793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.7079568-CDS-H-paniculata_contig315:17056..178471622929970.7079568-CDS-H-paniculata_contig315:17056..17847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig315 17057..17847 -
1691481092.0108237-CDS-H-paniculata_contig315:17056..178471691481092.0108237-CDS-H-paniculata_contig315:17056..17847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig315 17057..17847 -
1622929970.7229524-CDS-H-paniculata_contig315:21171..213261622929970.7229524-CDS-H-paniculata_contig315:21171..21326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig315 21172..21326 -
1691481092.0247493-CDS-H-paniculata_contig315:21171..213261691481092.0247493-CDS-H-paniculata_contig315:21171..21326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig315 21172..21326 -
1622929970.7399879-CDS-H-paniculata_contig315:21749..217931622929970.7399879-CDS-H-paniculata_contig315:21749..21793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig315 21750..21793 -
1691481092.0337105-CDS-H-paniculata_contig315:21749..217931691481092.0337105-CDS-H-paniculata_contig315:21749..21793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig315 21750..21793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig315.8503.1

>prot_H-paniculata_contig315.8503.1 ID=prot_H-paniculata_contig315.8503.1|Name=mRNA_H-paniculata_contig315.8503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp
SRISLYNLFWSYIADHIFSNRLQQVRSRSTAKQARQAANEPHWKGELLCR
RSRLGSVLSILRCLGQHCQKLWRGGHELSAMLNSSEGRWRKRLHLPNQKK
RIHPHHQQGGSGSGGSHQNQHHNHNHYEQRRMSQGLLVDANDGKSIISSG
STMLSSVSPGARHPMMLNDPNSQEINNNSSLPQAFHQEALTQQRILPSFS
TTPNHPHASAAPTATGWLIDHPPPPHAGGIMTPPNNIDQSGESGGLGSIS
SSTAMNQSQRGAAAIASLILIYLVTYVLYHISMEALADETGGAWAAHVGT
LLAQHASADRSNNGGGDGGGDGGGQAVGVM
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mRNA from alignment at H-paniculata_contig315:17056..21793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig315.8503.1 ID=mRNA_H-paniculata_contig315.8503.1|Name=mRNA_H-paniculata_contig315.8503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4738bp|location=Sequence derived from alignment at H-paniculata_contig315:17056..21793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCGCATATCTCTGTACAATCTGTTTTGGAGCTACATAGCAGAGTGAGT
GATTCATGGACACATAGTTACCGCTGACACAAATCCTATAACCTGGCCTA
TCCTAACGTTGGTGTTATTGGGTTGGTGTCTTAGTGTAGGGCAGGCAGTC
AGTACCCGGGGAAATGTGGGTCAGTAGATAATCTCTTTTTTCTCTCTTGA
GGTATGAGTGAAGGCTTGCCTCGTGAAAGGCATGTGTTGTGTTGTATGTA
TGTTATGTTGCCACACCACACTGACTGTTGACAACGCCGCGTGCTTCTGT
TGATGTTGATGATGGGGGCCACCTTATGTTCCACGCTGCGCGTGGGTTTC
GTTGAGTGTTATTTGTAAGCGTTGGCGAGGAATTTGTTCTGAGCAAGGTC
CACATCCTAACCATCTTCAACTGCGGGGCATACCTGATCTGTTACTGCTG
CTCACCTACTCCTACAGTCACATTTTTTCAAACCGACTACAACAAGTTCG
CTCGAGGAGTACGGCGAAGCAAGCACGGCAAGCAGCGAATGAGCCCCATT
GGAAAGGAGAACTCTTGTGTCGTAGAAGTCGCTTGGGTTCCGTGTTGAGC
ATTCTGCGGTGTCTCGGTCAACGTAAGTCCAGCCAGTACAACGACATGAT
GTCACATTGACCTCTTCCAAAATTGAGCATTCTAAAATGATCCAATACCG
TTTTAAAGTACAAGAATAAAGTCAGCCCTGGACAGGGAATACAAACACAC
GACCATATCAATAATCTACAGATCTGAGAATTACCCTGTCGGAAGCTACT
CACGTTTTGTTTTGAGACCTTGACTTATTGATTCAACCAACAAAAGCTGA
CTTGCATAATTTGTGTATGTTTCGTCATGATAATTTTCAAGCACTCAATA
TTCAATATTCCAACACAACACTGCGATTAAGTCAAGTACGATCTAGTATG
TAATACTTATGTTGCCTACTGACTGAGTGCAGTTACTGGCTCAGAGTTTC
AATCATAATTGAGGCAACTGCCGACAACAACGCGTGCATAGTTACTGACG
CGTGGGTGGTTTGATAGCTGGGGATCTTGTGTGTGTGAGATCAAGAGGCT
GTAATTCGATAGAGAGGACAACTGAAGCATGAGCTTTTGAAGCAAGACAA
ATGAAGTCATGAGTGACTGAGGGAATACAAGTGAACGAGCGAAGCTCTTA
AGTATTTCGCGGCTTTACTTCAGAAATACGAAGGCTTCTGCATGCACATG
TGTTTCTGCATGTTTCGTGTCTGTCAACACTGTTTTGTATATATAAATGG
CTTCTTACATCGATCAAACAAACGCGTCCCTCCTTATGGGTACAGTCGGT
TGCTCTATTTTTAGATTACAGTGGCAGACTCGATGTAAAACTACCGATAT
TAGGCAAAAGAGGTATAAGGCCGGGTTTTTGGGTTGCACTCGACCTTTTT
TTAATAAAGCTAGTTTTCGAGTGTGTTCACCCCGAATCCGGGCGTGTGTA
AGACCTTCTCTCACCGGACAAATACTAATACAAGACACGAATAAATACGA
GAAATCTGGAATGAATACTGCTTCTGTTTTGAGTTGGGGAAGATGTCCAC
ATGACTCGAATAATATGCAGTGTTCATGGAGTATCGAAAAGCTTGGGCAG
ATGGAGTTTTAATCTGTACAGTACCATCCAGAAAATAGACAGCACCTGCA
TGTATGTTGTTCGCTGGGTATCCGACCACCTGGTGACCATCTGTCGAGTG
ACTATTCATAGACTTATAACGAAAAAACATCTGTTTACCCAAGACAAATA
ATGATAGTTCGAGATGTAGTGACCAATGGCCGAATGTTTTTTATCGGATT
TTCGGTGAGTTCCCGAATTTGGGTCAAATTCGCTCAAATGTTTTGGAATC
GGAAGATATTGCCATAGCGAATAGTTCGATCATATGGCACGTGTTACGGT
TTTTGAATGCCCTAGCTCTACAAGAGAAACACGTTATATTGGGGACTAAT
CATATTAGATACCACATCCCAAAACACGGTTTACGACTCTAGCACAACGA
GCTTTGAAAATATTCAAAATGTAAACGCTAGGCAGTGTGCGCAATGTGAT
TCGGCACGGGTTAAAAAAAGCAGAAAAGACTCACACAAACAGTTCCGGAT
GTTATTGCAGAGGACCCCCGACGACCGGTAAGCCCTCAACTCCTTCAATT
TTAAGTGCTCGAAAGAATTTCCCACACCATTCTTTGCATAATACTAATTT
TTAGTGTCTGAAAATTGGGGATAAAACGTAGACGCTGATACAACGTAAAG
CCCCTAAAAAACAAACATCTCGAGTGATCGAACAGGGTCGTGACAAAGCG
GTCAAGTATCGTCAAAAACATGTTTTTTCGACTTTAGCGCAACGACATTT
TTGAACATTCAAAACGTGAAAGCTAGGCATTGTGCGCAATGTAATTCGGC
ATGGGTTAAAAAAGAAAAAAAACGCAAGCTATTACGGAGTTTGTTGACAT
AGGACCCCCAACGACCGGTAAACCCTTATCTCGGTTAATGTTGAGCGCTG
AAAAAAAAATCGACATAATCTTTTGAATCACACTAATTTCGATTGTCCCT
GAAAGTTGGGGGGAAAACGTCGACGCTTGTACAACACATTGTCCCAAAAA
ATGCAAAAAATCATAAAAACAAACCGTCCGTTGACCACTGTAGTTGCGAA
TACTCCGTTTGTATTTGTCCGGGGAGTGAAAACCTGCCAGCCTATGTAAG
ACCCTAGCACCCCTCCCTCAAGGCCCGGCGCGAGCAGCTACTCCCATACA
ACGTCACATGGCCTTATACCCAGTTCAAGGCTAAAATATACTATGCCGAT
TTTCTTCACGCGAACTAGGCAGCCTAAATCGGACCCACTACACGAGCTCT
GTCGTCGTTTACCCTGCCGGTGGGGCCACAAAAAAAAAACATACGGTACT
TAGCCGTATTGCCGCCCGACCCTACCTTATGCTCATCTAGTCCCTGAACA
TCATCATGACAGGTGAAAACGAAGGACATGGCATGATCACGAAGATAGGG
AACCGCGGCTGTTCGGCCAGACAGTTCGCTACATATAGCAAGTACGTATA
GTTAGCATGGTCTCTTTCCCATGGTGACTACAGGGCGCTCGACATTCATC
GTCATACGCGATTTTTGTTCTGAAACTGCACATGGGGTAAAACGGTTGTT
TAATCCTTCGGGCATCGATCTACACAACTCTCACTGATCTCTCCAAAATT
CCCACCTCATTTAATATCGACTTAAAAAAAACCCAGGAAAACATGAAAGC
TTTGACTCTTGACAGGATTACGGAGATAGAATCTGCCGCTGCCCAGGCAA
CTAGTGGAGTGCAATACGGTCATGACATGCAGCACACAGACAGGAAATTA
GTTGGCATGGTTGTGCGCAAGAACGAACGACGGCATTTACTCACCTGTTA
TAATTCATTTTTATTCCGCAACAGCCTTTTCCGGGTAATTCGGTGCCTGA
AGGGTGGTCAAGATATTTGTTTTTTTCCCACACCGTTTTTTTTACCGTAT
TTTACTTTCGTGTTAAATGTGATTGTTCTTGTTCCATGTATGATACGCAT
CGTTCATCTCTTTTCAGCGTACTTGGAGTATGTCACTGACCAGAAGAATA
AAACCCAGTAACCGTTCTTGGTGCAACCGGTACTTTGGGTTAGCCGGTTG
CCGGCTATCGGTTTTCTCCGCCAGTGCCCCCAAGTCTAGATAGACGCCGC
CTGGGAAGGATCTACGACACATATGAGAAGTGCTCGCCGCAGGAGGGCAT
GCCTGCAGAGTTTGTAATCATGTTTACAAAGCCAATCGATTGTGTGTGTG
CACCAATTTCAACATGAGCGAGTCACGACTACAAGGATTAACCCCTCTCG
GTGCGAATTACGCCATAATTCCTCCTTATGCATCCCCGCACTGTAGATTG
CCAAAAATTGTGGCGTGGCGGACACGAACTTTCAGCCATGCTCAATTCGT
CGGAGGGTCGCTGGCGCAAGCGGCTTCACCTGCCAAACCAAAAAAAACGC
ATCCACCCTCATCATCAGCAAGGGGGAAGTGGTAGTGGCGGAAGTCATCA
AAACCAACACCACAACCACAACCACTACGAACAACGACGGATGTCACAAG
GTCTTCTCGTCGATGCGAACGACGGCAAGAGTATCATATCATCCGGCTCG
ACGATGTTATCTTCGGTGTCTCCTGGAGCAAGGCATCCCATGATGCTCAA
CGACCCCAATAGTCAAGAGATCAACAACAACAGCAGCCTCCCTCAGGCCT
TCCACCAAGAAGCTTTAACGCAACAGCGAATACTCCCATCCTTTTCCACA
ACGCCCAACCATCCCCACGCTTCAGCCGCACCCACGGCCACGGGCTGGTT
AATAGACCACCCCCCTCCCCCGCACGCCGGGGGCATAATGACGCCTCCGA
ACAACATCGATCAATCAGGAGAAAGCGGAGGACTCGGCAGCATCTCGTCT
AGCACGGCGATGAACCAGTCCCAGCGCGGCGCGGCTGCAATCGCCTCGCT
CATTCTCATCTACCTAGTCACGTACGTCCTTTATCATATATCCATGGAAG
CCCTTGCAGACGAGACGGGCGGCGCCTGGGCGGCTCACGTAGGCACTCTT
CTAGCTCAGCATGCCTCCGCTGACAGGAGCAACAATGGCGGTGGCGACGG
CGGTGGCGACGGCGGTGGTCAAGCGGTCGGGGTGATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig315:17056..21793-

>mRNA_H-paniculata_contig315.8503.1 ID=mRNA_H-paniculata_contig315.8503.1|Name=mRNA_H-paniculata_contig315.8503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig315:17056..21793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCGCATATCTCTGTACAATCTGTTTTGGAGCTACATAGCAGATCTCGC
ATATCTCTGTACAATCTGTTTTGGAGCTACATAGCAGATCACATTTTTTC
AAACCGACTACAACAAGTTCGCTCGAGGAGTACGGCGAAGCAAGCACGGC
AAGCAGCGAATGAGCCCCATTGGAAAGGAGAACTCTTGTGTCGTAGAAGT
CGCTTGGGTTCCGTGTTGAGCATTCTGCGGTGTCTCGGTCAACTCACATT
TTTTCAAACCGACTACAACAAGTTCGCTCGAGGAGTACGGCGAAGCAAGC
ACGGCAAGCAGCGAATGAGCCCCATTGGAAAGGAGAACTCTTGTGTCGTA
GAAGTCGCTTGGGTTCCGTGTTGAGCATTCTGCGGTGTCTCGGTCAACAT
TGCCAAAAATTGTGGCGTGGCGGACACGAACTTTCAGCCATGCTCAATTC
GTCGGAGGGTCGCTGGCGCAAGCGGCTTCACCTGCCAAACCAAAAAAAAC
GCATCCACCCTCATCATCAGCAAGGGGGAAGTGGTAGTGGCGGAAGTCAT
CAAAACCAACACCACAACCACAACCACTACGAACAACGACGGATGTCACA
AGGTCTTCTCGTCGATGCGAACGACGGCAAGAGTATCATATCATCCGGCT
CGACGATGTTATCTTCGGTGTCTCCTGGAGCAAGGCATCCCATGATGCTC
AACGACCCCAATAGTCAAGAGATCAACAACAACAGCAGCCTCCCTCAGGC
CTTCCACCAAGAAGCTTTAACGCAACAGCGAATACTCCCATCCTTTTCCA
CAACGCCCAACCATCCCCACGCTTCAGCCGCACCCACGGCCACGGGCTGG
TTAATAGACCACCCCCCTCCCCCGCACGCCGGGGGCATAATGACGCCTCC
GAACAACATCGATCAATCAGGAGAAAGCGGAGGACTCGGCAGCATCTCGT
CTAGCACGGCGATGAACCAGTCCCAGCGCGGCGCGGCTGCAATCGCCTCG
CTCATTCTCATCTACCTAGTCACGTACGTCCTTTATCATATATCCATGGA
AGCCCTTGCAGACGAGACGGGCGGCGCCTGGGCGGCTCACGTAGGCACTC
TTCTAGCTCAGCATGCCTCCGCTGACAGGAGCAACAATGGCGGTGGCGAC
GGCGGTGGCGACGGCGGTGGTCAAGCGGTCGGGGTGATGATTGCCAAAAA
TTGTGGCGTGGCGGACACGAACTTTCAGCCATGCTCAATTCGTCGGAGGG
TCGCTGGCGCAAGCGGCTTCACCTGCCAAACCAAAAAAAACGCATCCACC
CTCATCATCAGCAAGGGGGAAGTGGTAGTGGCGGAAGTCATCAAAACCAA
CACCACAACCACAACCACTACGAACAACGACGGATGTCACAAGGTCTTCT
CGTCGATGCGAACGACGGCAAGAGTATCATATCATCCGGCTCGACGATGT
TATCTTCGGTGTCTCCTGGAGCAAGGCATCCCATGATGCTCAACGACCCC
AATAGTCAAGAGATCAACAACAACAGCAGCCTCCCTCAGGCCTTCCACCA
AGAAGCTTTAACGCAACAGCGAATACTCCCATCCTTTTCCACAACGCCCA
ACCATCCCCACGCTTCAGCCGCACCCACGGCCACGGGCTGGTTAATAGAC
CACCCCCCTCCCCCGCACGCCGGGGGCATAATGACGCCTCCGAACAACAT
CGATCAATCAGGAGAAAGCGGAGGACTCGGCAGCATCTCGTCTAGCACGG
CGATGAACCAGTCCCAGCGCGGCGCGGCTGCAATCGCCTCGCTCATTCTC
ATCTACCTAGTCACGTACGTCCTTTATCATATATCCATGGAAGCCCTTGC
AGACGAGACGGGCGGCGCCTGGGCGGCTCACGTAGGCACTCTTCTAGCTC
AGCATGCCTCCGCTGACAGGAGCAACAATGGCGGTGGCGACGGCGGTGGC
GACGGCGGTGGTCAAGCGGTCGGGGTGATG
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