mRNA_H-paniculata_contig31497.8501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31497.8501.1
Unique NamemRNA_H-paniculata_contig31497.8501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A0H5B939_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Ralfsia verrucosa TaxID=371971 RepID=A0A0H5B939_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.700e-21
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            ++NV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F
Sbjct:   83 KDNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKAVYGF 153
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A7T7IGN4_9STRA (PsaB (Fragment) n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7T7IGN4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.720e-21
Identity = 56/87 (64.37%), Postives = 61/87 (70.11%), Query Frame = 2 
Query:  155 K*KQNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF*SAFSL*RQSRT 406
            K  +NNV ARMLEHKEAIIS LSWV L LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F +  S    S T
Sbjct:   61 KANKNNVLARMLEHKEAIISHLSWVCLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKALYGFDTLLSSQTSSAT 146
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BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A7T7DA50_9STRA (Photosystem I (Fragment) n=2 Tax=Phaeosacciales TaxID=2797541 RepID=A0A7T7DA50_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.530e-21
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQAGKSSIRF 370
            +NNV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    L+EPVF QFIQA      +
Sbjct:   77 KNNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILIEPVFAQFIQAASGKALY 145
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A7T7IGN1_9STRA (PsaB (Fragment) n=1 Tax=Phaeothamnion wetherbeei TaxID=2569897 RepID=A0A7T7IGN1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.020e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            +NNV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F
Sbjct:  215 KNNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQATSGKALYGF 285
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A7T7DA72_9STRA (Photosystem I (Fragment) n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7T7DA72_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.660e-20
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQAGKSSIRF 370
            +NNV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    L+EPVF QFIQA      +
Sbjct:  218 KNNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILIEPVFAQFIQAASGKALY 286
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A0H5BN93_9PHAE (Photosystem I (Fragment) n=1 Tax=Sporochnus bolleanus TaxID=461143 RepID=A0A0H5BN93_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.360e-20
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            ++NV ARMLEHKEAIIS LSWV L LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F
Sbjct:   21 KDNVLARMLEHKEAIISHLSWVCLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKAIYGF 91
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A0H5B918_9PHAE (Photosystem I (Fragment) n=1 Tax=Dictyopteris prolifera TaxID=157156 RepID=A0A0H5B918_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.600e-20
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            ++NV ARMLEHKEAIIS LSWV+L LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GKS   F
Sbjct:   19 KDNVLARMLEHKEAIISHLSWVALFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKSLYGF 89
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: B7T242_VAULI (Photosystem I P700 chlorophyll a apoprotein A2 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B7T242_VAULI)

HSP 1 Score: 94.7 bits (234), Expect = 7.620e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            +NNV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F
Sbjct:  404 KNNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKAIYGF 474
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A7U0KSS5_OLILU (Photosystem I P700 chlorophyll a apoprotein A2 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KSS5_OLILU)

HSP 1 Score: 94.7 bits (234), Expect = 7.620e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            +NNV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F
Sbjct:  404 KNNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKTVYGF 474
[Close]
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Match: A0A1Z4F594_9PHAE (Photosystem I (Fragment) n=38 Tax=Phaeophyceae TaxID=2870 RepID=A0A1Z4F594_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.670e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  164 QNNVSARMLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNN-LVEPVFGQFIQA--GKSSIRF 370
            Q+NV ARMLEHKEAIIS LSWVSL LGFH TL LY+H+DTVVAFGQP    LVEPVF QFIQA  GK+   F
Sbjct:  390 QDNVLARMLEHKEAIISHLSWVSLFLGFH-TLGLYIHNDTVVAFGQPEKQILVEPVFAQFIQAASGKAVYGF 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31497.8501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5B939_9PHAE3.700e-2172.22Photosystem I P700 apoprotein A2 (Fragment) n=1 Ta... [more]
A0A7T7IGN4_9STRA5.720e-2164.37PsaB (Fragment) n=2 Tax=Ochrophyta TaxID=2696291 R... [more]
A0A7T7DA50_9STRA7.530e-2170.00Photosystem I (Fragment) n=2 Tax=Phaeosacciales Ta... [more]
A0A7T7IGN1_9STRA1.020e-2073.61PsaB (Fragment) n=1 Tax=Phaeothamnion wetherbeei T... [more]
A0A7T7DA72_9STRA4.660e-2070.00Photosystem I (Fragment) n=3 Tax=Ochrophyta TaxID=... [more]
A0A0H5BN93_9PHAE5.360e-2070.83Photosystem I (Fragment) n=1 Tax=Sporochnus bollea... [more]
A0A0H5B918_9PHAE7.600e-2072.22Photosystem I (Fragment) n=1 Tax=Dictyopteris prol... [more]
B7T242_VAULI7.620e-2073.61Photosystem I P700 chlorophyll a apoprotein A2 n=2... [more]
A0A7U0KSS5_OLILU7.620e-2073.61Photosystem I P700 chlorophyll a apoprotein A2 n=1... [more]
A0A1Z4F594_9PHAE9.670e-2073.61Photosystem I (Fragment) n=38 Tax=Phaeophyceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31497contigH-paniculata_contig31497:74..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue9.7e-15
Seed eggNOG ortholog2880.D1J7A4
Preferred namepsaB
KEGG koko:K02690
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0016168,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.chlorophyll binding
EggNOG OGs28JJ8@1,2QRYE@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size435
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31497.8501.1prot_H-paniculata_contig31497.8501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31497 258..446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.6414654-UTR-H-paniculata_contig31497:73..2571622929970.6414654-UTR-H-paniculata_contig31497:73..257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31497 74..257 +
1691481091.9714463-UTR-H-paniculata_contig31497:73..2571691481091.9714463-UTR-H-paniculata_contig31497:73..257Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31497 74..257 +
1622929970.6715276-UTR-H-paniculata_contig31497:446..5081622929970.6715276-UTR-H-paniculata_contig31497:446..508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31497 447..508 +
1691481091.9988093-UTR-H-paniculata_contig31497:446..5081691481091.9988093-UTR-H-paniculata_contig31497:446..508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31497 447..508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.6530335-CDS-H-paniculata_contig31497:257..4461622929970.6530335-CDS-H-paniculata_contig31497:257..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31497 258..446 +
1691481091.9880767-CDS-H-paniculata_contig31497:257..4461691481091.9880767-CDS-H-paniculata_contig31497:257..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31497 258..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31497.8501.1

>prot_H-paniculata_contig31497.8501.1 ID=prot_H-paniculata_contig31497.8501.1|Name=mRNA_H-paniculata_contig31497.8501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MLEHKEAIISRLSWVSLLLGFHNTLRLYVHSDTVVAFGQPGNNLVEPVFG
QFIQAGKSSIRF*
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mRNA from alignment at H-paniculata_contig31497:74..508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31497.8501.1 ID=mRNA_H-paniculata_contig31497.8501.1|Name=mRNA_H-paniculata_contig31497.8501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig31497:74..508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAAAAAATATTAGAAGAAGCAGGTGCTTTTATGGCAGAAGATTTTAC
AATTCAAGCCGCGTTACATACTCATCACCAATATATAGCAGGATTTTTGA
TGATGGGAGCATTTGCTCATGAATCGATATTTTTCGTTCGAGATTACGAT
CCAGAAATAAAAACAAAATAATGTTTCAGCAAGAATGCTAGAACATAAAG
AAGCAATTATTTCTCGTTTAAGTTGGGTTAGTTTACTTTTGGGTTTTCAT
AATACATTGAGATTATATGTTCATAGTGATACTGTAGTAGCTTTTGGTCA
ACCTGGAAACAACTTAGTTGAACCTGTTTTTGGGCAATTTATTCAAGCAG
GGAAAAGCTCTATACGGTTTTGATCTGCTTTTAGCCTCTAAAGACAGTCC
AGGACCTGCTAGTTTAGCAGGTAGCGAAATTCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig31497:74..508+

>mRNA_H-paniculata_contig31497.8501.1 ID=mRNA_H-paniculata_contig31497.8501.1|Name=mRNA_H-paniculata_contig31497.8501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig31497:74..508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGAACATAAAGAAGCAATTATTTCTCGTTTAAGTTGGGTTAGTTT
ACTTTTGGGTTTTCATAATACATTGAGATTATATGTTCATAGTGATACTG
TAGTAGCTTTTGGTCAACCTGGAAACAACTTAGTTGAACCTGTTTTTGGG
CAATTTATTCAAGCAGGGAAAAGCTCTATACGGTTTTGAATGCTAGAACA
TAAAGAAGCAATTATTTCTCGTTTAAGTTGGGTTAGTTTACTTTTGGGTT
TTCATAATACATTGAGATTATATGTTCATAGTGATACTGTAGTAGCTTTT
GGTCAACCTGGAAACAACTTAGTTGAACCTGTTTTTGGGCAATTTATTCA
AGCAGGGAAAAGCTCTATACGGTTTTGA
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