|
|
Homology
BLAST of mRNA_H-paniculata_contig3147.8498.1 vs. uniprot
Match: A0A7S0M620_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M620_9CRYP) HSP 1 Score: 57.0 bits (136), Expect = 5.840e-6 Identity = 50/180 (27.78%), Postives = 74/180 (41.11%), Query Frame = 1
Query: 127 RTLKRPSALVPPHAVLEHVLISLRVPDFPTDGYGLMQA---------FLFSALDQEVSRGP-------------VDYR-------RDWTDSDELSPRYLDKPSFDAVTKNVLGFLVGMSAFSVTGAPIFSEDDHHVTLPVRVIPDEHSSALRSVSVDFRLGRVREGSYKDCWLVERIVER 579
R K+PSAL+PPH V++ L +L++ D+P + G A FLF ++ + P VD + W ++ L D+ SF A K L+G +AF P F T+ RV D +F L RV +G+YKDCW+ + R
Sbjct: 7 RHYKQPSALLPPHRVVQIQLEALQMNDWPEEDGGCKHAYRFAVRASNFLFGSVGKPFMMQPGKTDPSVHADRIYVDPHFENRHIVKSWLGTERLE----DEASFIATVKRHFAPLLGAAAFEWAAPPRFDPAGAACTIAARVRTDGGPRLF-----EFDLVRVPDGAYKDCWMTAAVRPR 177
BLAST of mRNA_H-paniculata_contig3147.8498.1 vs. uniprot
Match: A0A0U9HRN3_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HRN3_KLENI) HSP 1 Score: 54.3 bits (129), Expect = 5.000e-5 Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1
Query: 133 LKRPSALVPPHAVLEHVLISLRVPDFPTDGYGLMQAFLFSALD--QEVSRGP----VDYRRDWTDSDELSPRYLDKPSFDAVTKNVL-GFLVGMSAFSVTGAPIF-SEDDHH------VTLPVRVIPDEHSSALRSVSVDFRLGRVREGSYKDCWL 558
++RP+AL+PP AV+ + +L+ D+P G+ AF F+ +E + G V R W E S RYL F+ + + + L+ +++ ++ A F D+ VT PV E S+ R+ S F + R+ G+YK CWL
Sbjct: 8 VRRPTALLPPTAVIRAQMEALQRNDYPEVNAGIKVAFDFAKPQGVEEFTMGKGQPVVKACRTW----EASERYLSMDGFELMLRQPMYSALINCTSWEISSALKFHGRGDNRAVQAVKVTAPVEAAGKEPSA--RTYSYTFCMERIETGAYKGCWL 157
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-25_002650.1 |
| Exons | 5 |
| Model size | 1323 |
| Cds size | 597 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3147.8498.1 >prot_H-paniculata_contig3147.8498.1 ID=prot_H-paniculata_contig3147.8498.1|Name=mRNA_H-paniculata_contig3147.8498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MDSCSDSGSSAEGDDFMARFMGEVNQREGLRRKEGVRTLKRPSALVPPHA
VLEHVLISLRVPDFPTDGYGLMQAFLFSALDQEVSRGPVDYRRDWTDSDE
LSPRYLDKPSFDAVTKNVLGFLVGMSAFSVTGAPIFSEDDHHVTLPVRVI
PDEHSSALRSVSVDFRLGRVREGSYKDCWLVERIVERGREGPPDVPMF* back to topmRNA from alignment at H-paniculata_contig3147:12845..16554- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3147.8498.1 ID=mRNA_H-paniculata_contig3147.8498.1|Name=mRNA_H-paniculata_contig3147.8498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3710bp|location=Sequence derived from alignment at H-paniculata_contig3147:12845..16554- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCAAGTCGGATCCTATGGACAGCTGCAGCGATTCGGGGAGCAGTGC
AGAGGGGGATGATTTCATGGCACGATTCATGGGCGAGGTTCGTGACAAAA
GGTGTCGTGATTGATGTTACTACTGCTACACAGATACCTAGGCTCTTTGT
TGTGCTCCGTAATACAAATTTTCTGAGTCGGCGGTGCCGGCTGCCCACTG
TTTCAGTTTAGCGATGACAATGCAGCCGTCATGGGATCTTGTCTTACATG
TACCGTTCTATCGCATGGTTCCGTAATACCGGTCAAACCTGTACATTTGG
AAGTATATTTTTATGGAAACAATTGTGCCTGACTTCTAGAGAAAACGTTG
CGTCTGTAGGTTTTACGCAAGGCTTCAAAGCAGTAGAACATTCTCATCTT
GTAGCAAAAACGTGTGTGCTACTTGATTTTACGTCAAACTTTCCCGACCG
CCTCATTTGTCCTCTATTTTTTTGTGTAGGTGAATCAGCGGGAGGGGCTG
CGACGAAAGGAGGGGGTGCGTACTCTTAAGCGGCCGTCTGCGCTTGTTCC
TCCGCACGCAGTACTAGAGCATGTTTTGATATCACTACGGGTGCCGGATT
TTCCTACCGATGGCTATGGCTTGATGCAGGCGAGTGGCCATATGCCCCGT
TTCGTAATTCGTTTAGTTGCTTTCCTGTTATTTGGTCGGACTCGACGCGA
CTACATTCTGTGAGTTGTAATCACGTAAGCCAAAGGGCCAATTACTATTT
ACTCGGGCTCGACGCGGCTGCGTACTGCAACTACTGATCAAGGAAGACGA
AGTAAGACCTACATTTCGCTGCGAATAGTGGACATAACGAATGCAACGGG
CGTCATTTTCATGGGTGCATCTATCGTAGAGTTTTCTCGCCTCTGCTGCC
TCCAGAGTCGCAAGAACGTTGGCATCAGTCGACTCTTGCATAGAATTCGG
TGCGACGCTCCCTGCAGCCGTACAGTTAATCATGAAAATTTGGTGGAGTC
CAACGCCCAATCTGTTCACTACTTGATCAACAGCGCCCTTCGTTCTAGAG
TGGAGACGTGTACCCGCTAGTCGGGTCCTGCGCAGGCTATTATCGTATCG
TTGTTTTCATCGTCAAAATGCAGGTCGTGTCTGCGAACGCCTTTGTGCGC
CATTCCGCATGCGCGATCACTCGAAAATGTGCAAGATGGGTAGTGCCCCA
GGACCAACTACTTGCGCCTGATATCAGTCGATATGTGAAAACGCTTCTGT
TGAATCAGTCCGCCTTCTTTTTTCTGCAGGCGTTCCTGTTCAGTGCGCTG
GACCAGGAAGTTAGTCGAGGACCTGTGGATTACCGACGGGACTGGACGGA
TTCTGACGAACTATCGCCAAGGTCGGTTCCGCTTCTCTCTCGCCTTGATT
TAAGTACGAGGAATTGGCCACGCTACGCCCGTGTAGTCGATGTCTTGTCA
ACGTACACATCGATGAACACATATACATGTTCCACGTATAGCGGCTGGCT
TCGCCTATCGATTTGTGCAGAACGAGAGTTAAAACGCTCGAACAACGTCC
GAGAACTGTTCGGACAAGTAAGACATCCCAATGATAAAGCATAAAAACCG
CAACGCAACGTGAAGCGAATGCACGGAGGGAAACGCTTCGATTCTAGAGA
CCCTACGGAAGTCTGTCTTGAAGCGTTTAACTTCCAACAGTCCCAGGGCC
TAATGTAGATCCAAATCCTACCGTACTTTCACAGGGTATGTTACCCCCCT
TGATATTGATGTACCAGTTTGATTTTCTTGAGTTCTAGGGTGCTTGTGAC
ACCGAAAAATGTATCGTGAGTAATATTTCATCGATATCTGTCATTAGACA
GATGTCCTCTTCCCACACTGTAGTCTACTTCTCTTCGAGAAATGACGAGC
TTGATAAAAGCTATGACCCAGCGTCATAGAATCTGAACCTGGCGGTTGGT
GTTTGAGATGTGGCACAGAGTGTTCACCTGCTAATCCACCCTCCCACACC
CGCCTACCACAAACTAATCAGATACCTTGATAAGCCGTCTTTCGACGCCG
TCACGAAAAACGTTCTGGGATTTCTCGTCGGGATGTCTGCCTTCTCGGTG
ACAGGCGCGCCGATTTTCTCCGAAGATGATCATCACGTCACTTTACCGGT
GAGAAACGTGGACCGCAACCAACGTAAGGTTAAGGTTTGTAACCCCCGGA
AGGTTAGGGTTAGTGCCGTGATCACCGAGCCCCCCCTCTGGACTTGGACA
CGACACCGCTTGTTCAGCAATGTCTGAGGGGCGTCTCTAGTATCGTGCTT
GTTTGTGTTGAAGGTGCACAGGGTATGGGCTGTCCTATCACTTGAAATTT
AGCCATGGACTTGGAAATCGTTTGTTTTACGTCGTGCAAATCTCGGAGAC
GGCTGAAATCCAGACACTGAGATGGTCATTATTTTCCCCACTTTTGGTCG
TTGCTCCTTGGTAATGTGTGGAGAAAACACTGATGTGTCTATCGATGGCG
TTGCCATTAGTGTAAGGCCAGCTCATGAACGCTAGAAACCTCGTGTAGCC
AATTTCTCAGTAACCGATTATAAATCCTCTCCCAACATAGCGTGTATGCT
ACGTTTGGAAACGTGAAATTGAACATTACGCATTTGCTCGTTCATGCTTA
ACATAATTTCTCTATCGACTATATAAATAGTACTTTAAAGTATGTAGCAT
GTATTTCCCTCCTCCTCTCTCATACCTGCTTGTTTATTTTTATCTTCTTT
GTTCCGTTGCTTGATTAAAGATTGTCTTGTTTCCGTCGTTACCGTTTGCT
TTCCCTCTCAATAATGGTTTCACCCGGTATATTTCTCACACAGGTGCGTG
TCATACCCGACGAACACTCATCAGCGCTACGATCGGTGTCCGTAGATTTT
CGACTAGGCCGCGTGAGGGAGGGGAGCTACAAAGATTGCTGGCTCGTGGA
AAGAATCGTGGAGAGGGGCAGAGAGGGACCGCCCGATGTGCCCATGTTTT
GAGAATAAAATATTTTGCGAATAAGTGGTTTTTAAACTGAGAGAATCGGT
ATACAGTATTATCGCTTCACATATGGCAAGAGGATACCTTGTGTGTACGT
TGTTGCGAGTATTACAAGGTCCCCACATTGCATGAGGTTGACGAAGTGCA
TAAAGCATATTTTTTTTACATTGCATGTACATTGTCAACCTCATGAACAC
TCTCTTAACACGTTGTGTAGACACTGCCAACCTCACCACAGGGTGGGTAT
TGCAATATCCGGAACAAGGTACCCCTCTGGCCACATGTGTTTCACGACTT
GTCAAAGTGTTAACACGTTGGACGTGTTGTCTAGGCGCGTCCATGAAGTT
GGTAGCTTACTTTGTTTTTTAAGGGATCCCCACGAACTACAGAGAGAGCA
GTTTGACCAAAAACCACTGAGAGCGCTGGACCCTATGCTGTTTACTTGAG
CGATAGAGAGAGTTCCCCATCTCTCTCCTTGTTTACGTAGCAACTAGTCT
ACCCTGATCTCGTAGGTTAACTGTTATCGCACATGTGAACCTTACTTGGG
CATTGTAGGTAGCGAGAATGAAGCGCCAGCGGGTGGGCGAAACGTTGATG
CCAACGCACCGCGCGCAACCGAAATATCGAAAACTGAGGGGAAATTGAGC
GATGTTGTATTTGCTTTTCGAAGAGGGGAAAATTAAACGAAAAAGTACTT
GCACTTCAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig3147:12845..16554- >mRNA_H-paniculata_contig3147.8498.1 ID=mRNA_H-paniculata_contig3147.8498.1|Name=mRNA_H-paniculata_contig3147.8498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig3147:12845..16554- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGCTGCAGCGATTCGGGGAGCAGTGCAGAGGGGGATGATTTCAT
GGCACGATTCATGGGCGAGATGGACAGCTGCAGCGATTCGGGGAGCAGTG
CAGAGGGGGATGATTTCATGGCACGATTCATGGGCGAGGTGAATCAGCGG
GAGGGGCTGCGACGAAAGGAGGGGGTGCGTACTCTTAAGCGGCCGTCTGC
GCTTGTTCCTCCGCACGCAGTACTAGAGCATGTTTTGATATCACTACGGG
TGCCGGATTTTCCTACCGATGGCTATGGCTTGATGCAGGTGAATCAGCGG
GAGGGGCTGCGACGAAAGGAGGGGGTGCGTACTCTTAAGCGGCCGTCTGC
GCTTGTTCCTCCGCACGCAGTACTAGAGCATGTTTTGATATCACTACGGG
TGCCGGATTTTCCTACCGATGGCTATGGCTTGATGCAGGCGTTCCTGTTC
AGTGCGCTGGACCAGGAAGTTAGTCGAGGACCTGTGGATTACCGACGGGA
CTGGACGGATTCTGACGAACTATCGCCAAGGCGTTCCTGTTCAGTGCGCT
GGACCAGGAAGTTAGTCGAGGACCTGTGGATTACCGACGGGACTGGACGG
ATTCTGACGAACTATCGCCAAGATACCTTGATAAGCCGTCTTTCGACGCC
GTCACGAAAAACGTTCTGGGATTTCTCGTCGGGATGTCTGCCTTCTCGGT
GACAGGCGCGCCGATTTTCTCCGAAGATGATCATCACGTCACTTTACCGA
TACCTTGATAAGCCGTCTTTCGACGCCGTCACGAAAAACGTTCTGGGATT
TCTCGTCGGGATGTCTGCCTTCTCGGTGACAGGCGCGCCGATTTTCTCCG
AAGATGATCATCACGTCACTTTACCGGTGCGTGTCATACCCGACGAACAC
TCATCAGCGCTACGATCGGTGTCCGTAGATTTTCGACTAGGCCGCGTGAG
GGAGGGGAGCTACAAAGATTGCTGGCTCGTGGAAAGAATCGTGGAGAGGG
GCAGAGAGGGACCGCCCGATGTGCCCATGTTTTGAGTGCGTGTCATACCC
GACGAACACTCATCAGCGCTACGATCGGTGTCCGTAGATTTTCGACTAGG
CCGCGTGAGGGAGGGGAGCTACAAAGATTGCTGGCTCGTGGAAAGAATCG
TGGAGAGGGGCAGAGAGGGACCGCCCGATGTGCCCATGTTTTGA back to top
|