mRNA_H-paniculata_contig314.8485.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig314.8485.1
Unique NamemRNA_H-paniculata_contig314.8485.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig314.8485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig314contigH-paniculata_contig314:41153..41640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.8377254-CDS-H-paniculata_contig314:41152..415571622929967.8377254-CDS-H-paniculata_contig314:41152..41557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig314 41153..41557 +
1691481090.642889-CDS-H-paniculata_contig314:41152..415571691481090.642889-CDS-H-paniculata_contig314:41152..41557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig314 41153..41557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.8640463-UTR-H-paniculata_contig314:41557..416401622929967.8640463-UTR-H-paniculata_contig314:41557..41640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig314 41558..41640 +
1691481090.6538064-UTR-H-paniculata_contig314:41557..416401691481090.6538064-UTR-H-paniculata_contig314:41557..41640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig314 41558..41640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig314.8485.1prot_H-paniculata_contig314.8485.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig314 41153..41557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig314.8485.1

>prot_H-paniculata_contig314.8485.1 ID=prot_H-paniculata_contig314.8485.1|Name=mRNA_H-paniculata_contig314.8485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
GGLVWVCGCRSVAPSVTAPCRKSFLGWLFVRHPFFGIVPARARNVKGRYV
RLGPVGGEQELGVGEWRQARECDAPPMCDLPSLTNKSRNPCLTPCLPSMT
CLPCRDIFGEIFVVCMFSACSRDYPLEDVRVEGG*
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mRNA from alignment at H-paniculata_contig314:41153..41640+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig314.8485.1 ID=mRNA_H-paniculata_contig314.8485.1|Name=mRNA_H-paniculata_contig314.8485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=488bp|location=Sequence derived from alignment at H-paniculata_contig314:41153..41640+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGTTGGTGTGGGTATGTGGGTGCCGCAGTGTAGCACCGTCAGTCAC
TGCTCCGTGTCGCAAGAGCTTTTTGGGGTGGTTATTTGTTCGTCACCCCT
TTTTCGGGATTGTTCCAGCGAGGGCGCGCAATGTCAAGGGCCGTTACGTA
CGTTTAGGTCCGGTGGGTGGAGAGCAGGAGTTGGGGGTTGGAGAGTGGAG
GCAAGCCAGAGAGTGTGATGCCCCGCCGATGTGTGACCTTCCGAGCTTGA
CAAACAAGTCTCGCAATCCCTGCCTGACGCCGTGTTTACCGAGCATGACT
TGCTTGCCGTGCAGGGATATTTTCGGTGAAATATTTGTTGTCTGCATGTT
TTCTGCTTGCTCCAGAGACTATCCTCTTGAGGATGTCCGAGTCGAGGGCG
GGTAGAGTAGGTGGGGTGGTGCAGCAATCTTGAAAAGAAAGGGACGGGGT
GTCTGATGGAAAAAAAGGGGCTAGAGTGCGCGCGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig314:41153..41640+

>mRNA_H-paniculata_contig314.8485.1 ID=mRNA_H-paniculata_contig314.8485.1|Name=mRNA_H-paniculata_contig314.8485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig314:41153..41640+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGTTGGTGTGGGTATGTGGGTGCCGCAGTGTAGCACCGTCAGTCAC
TGCTCCGTGTCGCAAGAGCTTTTTGGGGTGGTTATTTGTTCGTCACCCCT
TTTTCGGGATTGTTCCAGCGAGGGCGCGCAATGTCAAGGGCCGTTACGTA
CGTTTAGGTCCGGTGGGTGGAGAGCAGGAGTTGGGGGTTGGAGAGTGGAG
GCAAGCCAGAGAGTGTGATGCCCCGCCGATGTGTGACCTTCCGAGCTTGA
CAAACAAGTCTCGCAATCCCTGCCTGACGCCGTGTTTACCGAGCATGACT
TGCTTGCCGTGCAGGGATATTTTCGGTGAAATATTTGTTGTCTGCATGTT
TTCTGCTTGCTCCAGAGACTATCCTCTTGAGGATGTCCGAGTCGAGGGCG
GGTAGGGTGGGTTGGTGTGGGTATGTGGGTGCCGCAGTGTAGCACCGTCA
GTCACTGCTCCGTGTCGCAAGAGCTTTTTGGGGTGGTTATTTGTTCGTCA
CCCCTTTTTCGGGATTGTTCCAGCGAGGGCGCGCAATGTCAAGGGCCGTT
ACGTACGTTTAGGTCCGGTGGGTGGAGAGCAGGAGTTGGGGGTTGGAGAG
TGGAGGCAAGCCAGAGAGTGTGATGCCCCGCCGATGTGTGACCTTCCGAG
CTTGACAAACAAGTCTCGCAATCCCTGCCTGACGCCGTGTTTACCGAGCA
TGACTTGCTTGCCGTGCAGGGATATTTTCGGTGAAATATTTGTTGTCTGC
ATGTTTTCTGCTTGCTCCAGAGACTATCCTCTTGAGGATGTCCGAGTCGA
GGGCGGGTAG
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