mRNA_H-paniculata_contig3138.8475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3138.8475.1
Unique NamemRNA_H-paniculata_contig3138.8475.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3138.8475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3138contigH-paniculata_contig3138:10104..12284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size455
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.7618685-CDS-H-paniculata_contig3138:10103..101971622929966.7618685-CDS-H-paniculata_contig3138:10103..10197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3138 10104..10197 -
1691481090.3168366-CDS-H-paniculata_contig3138:10103..101971691481090.3168366-CDS-H-paniculata_contig3138:10103..10197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3138 10104..10197 -
1622929966.775242-CDS-H-paniculata_contig3138:11925..122841622929966.775242-CDS-H-paniculata_contig3138:11925..12284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3138 11926..12284 -
1691481090.3345582-CDS-H-paniculata_contig3138:11925..122841691481090.3345582-CDS-H-paniculata_contig3138:11925..12284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3138 11926..12284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3138.8475.1prot_H-paniculata_contig3138.8475.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3138 10104..12284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3138.8475.1

>prot_H-paniculata_contig3138.8475.1 ID=prot_H-paniculata_contig3138.8475.1|Name=mRNA_H-paniculata_contig3138.8475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MRCLDASCLFSQLAVDTRARPWVATMALFSSFHRNSSNSSRVSPAVLLLL
LASANSGQSSQPAVSNVAPSYAGSFADLSCSLVLSSPIRRTVIAATPAAT
TPVAFVARHWKYGGAFYGMRKAPRRSRTSSFSPITTINMVGRGGRGGSGG
S
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mRNA from alignment at H-paniculata_contig3138:10104..12284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3138.8475.1 ID=mRNA_H-paniculata_contig3138.8475.1|Name=mRNA_H-paniculata_contig3138.8475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2181bp|location=Sequence derived from alignment at H-paniculata_contig3138:10104..12284- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATGCCTTGATGCTTCCTGCTTGTTCTCCCAGCTGGCTGTCGACAC
ACGAGCCCGACCCTGGGTTGCGACAATGGCCTTATTTTCATCGTTTCATA
GGAATTCCTCAAATTCGAGCCGGGTGTCGCCAGCGGTATTGCTCCTTCTG
CTCGCTTCTGCGAATTCTGGACAGTCCAGTCAGCCAGCAGTATCAAACGT
TGCGCCATCGTACGCCGGCTCTTTCGCTGACCTGTCATGTTCGCTGGTGT
TATCGTCACCTATTCGTAGAACGGTTATTGCTGCCACTCCTGCGGCTACT
ACTCCCGTGGCGTTCGTGGCTCGACACTGGAAGTATGGTGGCGCTTTCTA
TGGCATGAGGTAAGAAAACTGGATCTATTTTCGTCCTGAGCAGTAGAAGC
AGTCGTGTGTTCAAACTGTAATCTGATGTACACTCCCAAACTTGATACAT
TTACTTGCCGTATGTACTTCTTGGCCACTGCCCAATACACGGCTTACAGA
CGGCACTGTGCGAACGGCGCCGTATTCAGTAGCAGCGCTCTCTCAGTGAA
AGCTGAACGTGGACATGTAGCCTTTGTTAGGCCTTTGTAAAGACGATGTG
CCTGTAGCGGTTGATGGTTGGTGTTACTCCGGGTCATCATCATGCCATGG
TACATGAGTCGCGAATAGCAAGACCAACACTGTCAGCCCCACACGCTTAC
CTTTTTGAAGTTGTAGTGGTTGAAAACGATATTTGTATTGAGTTTTCAGC
CTTCACTTGGGTCCAGAATCCAGTAGCTGTCCGATACCTCCATCGCTGCT
CGGTTGCCTGCCGCGCTGCTGTATATATGCCAGATCTAGGGCTACAACTA
AATACGACCCTATTCCGCCTTTTGGATTCTGCCGGTTCCTACGTTATCAT
TTTACATGACCACTGACCGTACTGTAAATGAATTATACCTTCATGTTCCA
CGTGACAATACCTGCAGCTTAAAGCCATTTTTTGACCGAGCAACCCTGAT
CTTTTATTCCCGATTTTTGTCTACCGTAGTCATTTAATTTGGAAAAATAC
AACACACGACGTTAATGGATGTGGTCGATGACCTCTTGGACAAAAGTTGG
GGATAAAAAAAACTGGCTCGCTTAGACTGGTGGATTTGGGGTTCAACTCC
TTTCATTCACAAGAAATAACAACTGTATATCCGTGAGATAAGGAATCTAT
TTATTAATAGGAATGGGAATGGTTTTTGCTCTCATCACCCTAAAGGTTAC
GGATTTTGCAAGTACTGCGTGCCCATTAGTTGAAGACTTGAGTCGTGCAG
TTAATTGAAGCCATCTCACAGTCGAATCGAAAAAGATGTCGCGTACCTGC
GATCAGCGTTGTTCACCAGAATTGGGGACGTCGACGCCAGTGTAACCCAG
CGTAAAAATCACATATATTGCTCAATTATTAACATCAAAACACCCTCAAT
CATATTTTTTTTGTTCGCTATCTTCCGGATACTAAAGATCTTGCTTTTGT
GTTCTCTTGATCCATTTCTTTGATCCGTCCGAAAGTTCAAAAAGCAGCGC
TCGCTCCTTTTTAAAAGAATAGATTTCTCATCTCATTTTCACGAATATAC
TTGGACTGTAGGCTGGAGTATTTGCGTTAAACGAATTTCTTTCGGCCCAT
TTCGGTTTGGTCGCATATAGTTAACAGTGAATAACTCTCGTTTCGGAAGG
ATTTGCTCTTCAAAAGCCGTCTCTTTCGTGAGCAACACGAGAAGTCACTG
CATGTGACAAGGAGTTCATTTTGTAACGTGACGTTGGTGTATGTAGGTAG
ACTGGGGTCTGGCAACAGAAGCTCACTGTTACCTGTACACGACCAAAGCG
AAATTTGCTGAAGGAATTCGTTTGGCGAAAATACTCACTGTTGCTCATTG
CAAACGCCCAATATAACGGTATCAGGCACGGTCTGTCGTCTGTCCCCACC
CAGCCCACACTACCTACCTCCTACTAGTTCATGTAGTTCCATGTTTTAAT
TTAGTCAAGGTTGAGATTTTAGCTAAGACGACCTGGACATTGCGACCACC
CAGTGTGATGGTATGCACGTTTGTTACTCTCTGTCAGGAAAGCACCAAGA
AGATCGAGAACGTCAAGCTTTAGCCCAATCACAACGATCAACATGGTTGG
CCGCGGGGGGCGCGGGGGGAGTGGAGGGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig3138:10104..12284-

>mRNA_H-paniculata_contig3138.8475.1 ID=mRNA_H-paniculata_contig3138.8475.1|Name=mRNA_H-paniculata_contig3138.8475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig3138:10104..12284- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATGCCTTGATGCTTCCTGCTTGTTCTCCCAGCTGGCTGTCGACAC
ACGAGCCCGACCCTGGGTTGCGACAATGGCCTTATTTTCATCGTTTCATA
GGAATTCCTCAAATTCGAGCCGGGTGTCGCCAGCGGTATTGCTCCTTCTG
CTCGCTTCTGCGAATTCTGGACAGTCCAGTCAGCCAGCAGTATCAAACGT
TGCGCCATCGTACGCCGGCTCTTTCGCTGACCTGTCATGTTCGCTGGTGT
TATCGTCACCTATTCGTAGAACGGTTATTGCTGCCACTCCTGCGGCTACT
ACTCCCGTGGCGTTCGTGGCTCGACACTGGAAGTATGGTGGCGCTTTCTA
TGGCATGAGATGAGATGCCTTGATGCTTCCTGCTTGTTCTCCCAGCTGGC
TGTCGACACACGAGCCCGACCCTGGGTTGCGACAATGGCCTTATTTTCAT
CGTTTCATAGGAATTCCTCAAATTCGAGCCGGGTGTCGCCAGCGGTATTG
CTCCTTCTGCTCGCTTCTGCGAATTCTGGACAGTCCAGTCAGCCAGCAGT
ATCAAACGTTGCGCCATCGTACGCCGGCTCTTTCGCTGACCTGTCATGTT
CGCTGGTGTTATCGTCACCTATTCGTAGAACGGTTATTGCTGCCACTCCT
GCGGCTACTACTCCCGTGGCGTTCGTGGCTCGACACTGGAAGTATGGTGG
CGCTTTCTATGGCATGAGGAAAGCACCAAGAAGATCGAGAACGTCAAGCT
TTAGCCCAATCACAACGATCAACATGGTTGGCCGCGGGGGGCGCGGGGGG
AGTGGAGGGAGTGAAAGCACCAAGAAGATCGAGAACGTCAAGCTTTAGCC
CAATCACAACGATCAACATGGTTGGCCGCGGGGGGCGCGGGGGGAGTGGA
GGGAGT
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