mRNA_H-paniculata_contig31183.8433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31183.8433.1
Unique NamemRNA_H-paniculata_contig31183.8433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.480e-16
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 2 
Query:  362 GHFVAFAMDPENEHPLIVGRIVALR-ETGDGEELEVAWYSPKQKPRKGAKRSQYGRGGWSQDFVINEENKRVPSISLEEKDAVSVTFDSLNANGKLPSVVWQAIAENVGQ 688
            G F  F ++  N  PL+VG+IV++    G+G EL V W+SP    RK  +RS+YGRG WSQ+F + E NK       E  +AV  TF SL  +GKLPS VW A+ E+ G+
Sbjct:   82 GWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPAS--RKKCRRSKYGRGVWSQEF-LKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESQGK 188
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-15
Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 2 
Query:  362 GHFVAFAMDPENEHPLIVGRIVALR-ETGDGEELEVAWYSPKQKPRKGAKRSQYGRGGWSQDFVINEENKRVPSISLEEKDAVSVTFDSLNANGKLPSVVWQAIAENVGQLVDEES 706
            G F  F ++  N  PL+VG+IV++    G+G EL V W+SP    RK  +RS+YGRG WSQ+F + E NK       E  +AV  TF SL  +GKLPS VW A+ E+V     EES
Sbjct:  234 GWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPAS--RKKCRRSKYGRGVWSQEF-LKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEES 346
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.920e-14
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 2 
Query:  302 GPVNDLGLAAGGDKANACKI--GHFVAFAMDPENEHPLIVGRIVALRETGD-GEELEVAWYSPKQKPRKGAKRSQYGRGGWSQDFVINEENKRVPSISLEEKDAVSVTFDSLNANGKLPSVVWQAIAENVGQLVDEES 706
            GP+ + G   GG   N+ ++  G F    ++  N  PL+VG+IV++   G+ G E+ + W++P    RK  +RS+YGRG WSQ F + ++NK  P  S E   +V  TF SL  +GKLPS VW A+ E+V     EE+
Sbjct:  170 GPLTESG---GGGAGNSLRLQPGWFAVLPLEMTNTCPLVVGQIVSVESGGENGGEVLINWFAPVS--RKKCRRSRYGRGVWSQQF-LKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVPSSSLEEA 301
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.220e-12
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 2 
Query:  443 GDGEELEVAWYSPKQKPRKGAKRSQYGRGGWSQDFVINEENKRVPSISLEEKDAVSVTFDSLNANGKLPSVVWQAIAENVGQLVDEES 706
            G+G EL V W+SP    RK  +RS+YGRG WSQ+F + E NK       E  +AV  TF SL  +GKLPS VW A+ E+V     EES
Sbjct:   15 GNGGELTVTWFSPAS--RKKCRRSKYGRGVWSQEF-LKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEES 99
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: B2ZX66_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=26 Tax=Dictyotaceae TaxID=2874 RepID=B2ZX66_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.550e-7
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 3 
Query: 1245 MITRRRVTQCHPFYLADPNPWP*VAAMGALSMTFGGVMFFNDLL 1376
            M ++ RV+  HPF+L DP+PWP VA++GALS+TFGGVMF ++ L
Sbjct:    6 MKSQGRVSHRHPFHLVDPSPWPLVASIGALSLTFGGVMFMHNYL 49
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A4Y5T8S8_9PHAE (Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotaceae TaxID=2874 RepID=A0A4Y5T8S8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-7
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 3 
Query: 1245 MITRRRVTQCHPFYLADPNPWP*VAAMGALSMTFGGVMFFND 1370
            MI++ +V+  HPF+L DP+PWP VA++GALS+TFGGVMF ++
Sbjct:    1 MISQVKVSHRHPFHLVDPSPWPIVASIGALSLTFGGVMFMHN 42
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A173N127_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Papenfussiella densa TaxID=1758035 RepID=A0A173N127_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.530e-7
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 3 
Query: 1245 MITRRRVTQCHPFYLADPNPWP*VAAMGALSMTFGGVMFFND 1370
            M  + ++ Q HPF+L DP+PWP VAA+G LS+TFGGV+F ++
Sbjct:    1 MKLKAKMVQRHPFHLVDPSPWPLVAALGGLSLTFGGVLFMHN 42
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BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: G5EIG7_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Padina pavonica TaxID=531984 RepID=G5EIG7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.980e-7
Identity = 23/42 (54.76%), Postives = 35/42 (83.33%), Query Frame = 3 
Query: 1245 MITRRRVTQCHPFYLADPNPWP*VAAMGALSMTFGGVMFFND 1370
            M ++ +++  HPF+L DP+PWP VA++GALS+TFGGVMF ++
Sbjct:    8 MKSQVKLSHRHPFHLVDPSPWPLVASIGALSLTFGGVMFMHN 49
[Close]
BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A2Z5T186_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=193 Tax=Dictyotaceae TaxID=2874 RepID=A0A2Z5T186_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-6
Identity = 23/40 (57.50%), Postives = 35/40 (87.50%), Query Frame = 3 
Query: 1251 TRRRVTQCHPFYLADPNPWP*VAAMGALSMTFGGVMFFND 1370
            ++ +++Q HPF+L DP+PWP VA++GALS+TFGGVMF ++
Sbjct:    2 SQVKLSQRHPFHLVDPSPWPIVASIGALSLTFGGVMFMHN 41
[Close]
BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Match: A0A7I6P3F8_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=10 Tax=Dictyotaceae TaxID=2874 RepID=A0A7I6P3F8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.330e-6
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 3 
Query: 1251 TRRRVTQCHPFYLADPNPWP*VAAMGALSMTFGGVMFFND 1370
            ++ +V+  HPF+L DP+PWP VA++GALS+TFGGVMF ++
Sbjct:    1 SKVKVSHRHPFHLVDPSPWPIVASIGALSLTFGGVMFMHN 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31183.8433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3A9_9PHAE1.480e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIQ0_9PHAE1.900e-1545.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI1.920e-1439.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4U0_9PHAE6.220e-1248.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2ZX66_9PHAE1.550e-759.09Cytochrome c oxidase subunit 3 (Fragment) n=26 Tax... [more]
A0A4Y5T8S8_9PHAE1.830e-759.52Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotace... [more]
A0A173N127_9PHAE3.530e-754.76Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
G5EIG7_9PHAE7.980e-754.76Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
A0A2Z5T186_9PHAE1.180e-657.50Cytochrome c oxidase subunit 3 (Fragment) n=193 Ta... [more]
A0A7I6P3F8_9PHAE1.330e-657.50Cytochrome c oxidase subunit 3 (Fragment) n=10 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31183contigH-paniculata_contig31183:1097..2792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1413
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31183.8433.1prot_H-paniculata_contig31183.8433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31183 1708..2127 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.0059657-UTR-H-paniculata_contig31183:1096..17071622929960.0059657-UTR-H-paniculata_contig31183:1096..1707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31183 1097..1707 -
1691481087.0414004-UTR-H-paniculata_contig31183:1096..17071691481087.0414004-UTR-H-paniculata_contig31183:1096..1707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31183 1097..1707 -
1622929960.0509803-UTR-H-paniculata_contig31183:2127..23641622929960.0509803-UTR-H-paniculata_contig31183:2127..2364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31183 2128..2364 -
1691481087.0601525-UTR-H-paniculata_contig31183:2127..23641691481087.0601525-UTR-H-paniculata_contig31183:2127..2364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31183 2128..2364 -
1622929960.072853-UTR-H-paniculata_contig31183:2647..27921622929960.072853-UTR-H-paniculata_contig31183:2647..2792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31183 2648..2792 -
1691481087.0677238-UTR-H-paniculata_contig31183:2647..27921691481087.0677238-UTR-H-paniculata_contig31183:2647..2792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31183 2648..2792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.024477-CDS-H-paniculata_contig31183:1707..21271622929960.024477-CDS-H-paniculata_contig31183:1707..2127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31183 1708..2127 -
1691481087.0497546-CDS-H-paniculata_contig31183:1707..21271691481087.0497546-CDS-H-paniculata_contig31183:1707..2127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31183 1708..2127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31183.8433.1

>prot_H-paniculata_contig31183.8433.1 ID=prot_H-paniculata_contig31183.8433.1|Name=mRNA_H-paniculata_contig31183.8433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MDPENEHPLIVGRIVALRETGDGEELEVAWYSPKQKPRKGAKRSQYGRGG
WSQDFVINEENKRVPSISLEEKDAVSVTFDSLNANGKLPSVVWQAIAENV
GQLVDEESEEERKEDNEEDEQAEDISPKHRSLISHLCSK*
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mRNA from alignment at H-paniculata_contig31183:1097..2792-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31183.8433.1 ID=mRNA_H-paniculata_contig31183.8433.1|Name=mRNA_H-paniculata_contig31183.8433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1696bp|location=Sequence derived from alignment at H-paniculata_contig31183:1097..2792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGCCCTTCCTTTCCACTCGTCACTACATTCCACACTGTTATAAGCTC
AGCTCTACCCACTTTACCGATTAACACCCACCTCGCCCAGCACCGGCTAT
GCATTAGGAATGCGGAGCAGCGCATGAAGCAATCGCTGTTAGGAAGTGAG
TGATCTACGCAAATGAATTGTAGCAGCTGTAGATGGTTGTTGTTGTCCAT
TGGTTTATTTGTGCAGCGGGCTGCTGCAAATTTGTAGGCAAGGATGTTTA
TTTCTACAGTTTTGGCCATTCGTTCCAGTGGGCACGAGGTGCGGTCTGCA
GGGTGCTTAACCCGGTGGACAGCGCAATGCATGCAGCCTCATGGTCGCTC
CACATAGTAAAGGTCAGACATGTGTGAAGGCTAAAAATAACTTGCTCACC
CTTCATGCTTGTGTTTACTCTTCACCAGGTGACGAAGGCATGACGTTCAA
CGATGCCATGAAGGAATTGGAGAACAGCTTAAAGGAGCTCGGAGAGTCTT
CTCTGCTCGACTTCTCACGGGACCCGTCTCCCTGCTCCTGAAGATCCTGT
GTGGCCTGACGAGGGCCCAGGACACAACGAGTTGGGGCCCGTAAACGATC
TGGGTTTAGCTGCTGGAGGTGACAAGGCCAATGCGTGTAAGATTGGCCAC
TTTGTTGCCTTTGCTATGGATCCCGAGAACGAGCACCCACTTATCGTCGG
GCGGATCGTAGCACTCCGGGAGACGGGCGACGGAGAGGAGCTGGAGGTAG
CATGGTACTCTCCTAAGCAGAAACCACGTAAAGGCGCCAAGAGATCGCAG
TATGGTAGGGGAGGCTGGTCTCAAGACTTCGTCATCAACGAGGAAAACAA
GCGAGTTCCATCCATAAGCCTGGAGGAAAAGGATGCTGTCAGTGTGACGT
TCGACTCCCTCAACGCCAATGGCAAGTTGCCGTCCGTCGTTTGGCAAGCA
ATTGCTGAGAATGTTGGGCAACTAGTAGATGAGGAGTCCGAGGAGGAACG
GAAAGAAGATAATGAAGAGGATGAGCAAGCAGAGGACATATCACCTAAGC
ATCGCAGTTTAATATCCCATTTATGTAGTAAGTAGCACTACTTGCTGTTG
TTGTTGATGATGTAGAAGTTTCTGCACGAGTTTTTTGTTGGTGATAGTGG
TAACACTTTGTGATTATTGTTGTTGATGTAGGAGAGGATGAGCACCAGGA
AGTCCACTAGATAATTGTAAGGGGCGGTCGGGTTGGTGCGATACCCACAG
CTAGCTGTGATTCTAATGCTGCTGCTGTTTCTTGATGATAAATTGCTATG
TTAGTAGTAGTTGTTGTTATTGTATCCCTTTCACCGCTTTGAAACTGCTC
TCGTAGGAAAAAAGTTACACCCTCCCGAGAACTGTGGAGATAATCATGGG
TTTACGCCTATTGCTGTTAAAGGGTTAGCTTTAGAGGAATATAGTACTTG
GATTTAATCAAAGATGAAAAAAAATCTGAAATTTTATTTTTTATCAGTTT
TTCTTTTATTATTGCGCGAATATATTTATGATTACACGTCGTCGAGTGAC
TCAGTGTCACCCGTTTTATTTGGCTGATCCCAACCCTTGGCCTTAAGTTG
CAGCAATGGGGGCTTTAAGTATGACTTTTGGTGGGGTAATGTTTTTTAAT
GACTTACTACATGCGTGGTCAACGATCTAAAAACGACAACTACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31183:1097..2792-

>mRNA_H-paniculata_contig31183.8433.1 ID=mRNA_H-paniculata_contig31183.8433.1|Name=mRNA_H-paniculata_contig31183.8433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig31183:1097..2792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCCGAGAACGAGCACCCACTTATCGTCGGGCGGATCGTAGCACT
CCGGGAGACGGGCGACGGAGAGGAGCTGGAGGTAGCATGGTACTCTCCTA
AGCAGAAACCACGTAAAGGCGCCAAGAGATCGCAGTATGGTAGGGGAGGC
TGGTCTCAAGACTTCGTCATCAACGAGGAAAACAAGCGAGTTCCATCCAT
AAGCCTGGAGGAAAAGGATGCTGTCAGTGTGACGTTCGACTCCCTCAACG
CCAATGGCAAGTTGCCGTCCGTCGTTTGGCAAGCAATTGCTGAGAATGTT
GGGCAACTAGTAGATGAGGAGTCCGAGGAGGAACGGAAAGAAGATAATGA
AGAGGATGAGCAAGCAGAGGACATATCACCTAAGCATCGCAGTTTAATAT
CCCATTTATGTAGTAAGTAGATGGATCCCGAGAACGAGCACCCACTTATC
GTCGGGCGGATCGTAGCACTCCGGGAGACGGGCGACGGAGAGGAGCTGGA
GGTAGCATGGTACTCTCCTAAGCAGAAACCACGTAAAGGCGCCAAGAGAT
CGCAGTATGGTAGGGGAGGCTGGTCTCAAGACTTCGTCATCAACGAGGAA
AACAAGCGAGTTCCATCCATAAGCCTGGAGGAAAAGGATGCTGTCAGTGT
GACGTTCGACTCCCTCAACGCCAATGGCAAGTTGCCGTCCGTCGTTTGGC
AAGCAATTGCTGAGAATGTTGGGCAACTAGTAGATGAGGAGTCCGAGGAG
GAACGGAAAGAAGATAATGAAGAGGATGAGCAAGCAGAGGACATATCACC
TAAGCATCGCAGTTTAATATCCCATTTATGTAGTAAGTAG
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