mRNA_H-paniculata_contig31156.8427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31156.8427.1
Unique NamemRNA_H-paniculata_contig31156.8427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31156.8427.1 vs. uniprot
Match: A0A6H5JEG6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEG6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.890e-26
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 3 
Query:    3 DGSGGKGFAK----PMNYDEEGYVAVPVNEGEWKDLMALEFEAATRQGATKAAVVGEDGIVLVVSKEGKVLRRGVGVPTWKMIRDDVDPP 260
            DG G KG AK     ++Y+E+GYVA PV+E  W+ LM  EFEAA RQG   A   G+DGIVL+VSK+GKVLRRGVG+P W +IRDDVDPP
Sbjct:  312 DGKGAKGLAKGFGTSLSYEEQGYVAAPVDEDGWRALMREEFEAAERQGVV-AQSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPP 400
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BLAST of mRNA_H-paniculata_contig31156.8427.1 vs. uniprot
Match: A0A835Z880_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z880_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.340e-16
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:   18 KGFAKPMNYDEEGYVAVPVNEGEWKDLMALEFEAATRQGATKAAVVGEDGIVLVVSKEGKVLRRGVGVPTWKMIRDDVDP 257
            KGF     Y ++G+V  P  E EW+ L+A E   A RQG +KAA   + G+VLVVS++GKVLRRG+G+P W MIR D+ P
Sbjct:  235 KGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSKAA---KQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYP 311
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BLAST of mRNA_H-paniculata_contig31156.8427.1 vs. uniprot
Match: A0A0G4FNK1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FNK1_VITBC)

HSP 1 Score: 70.9 bits (172), Expect = 1.990e-11
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:    3 DGSGGKGFA-KPMNYDEEGYVAVPVNEGEWKDLMALEFEAATRQGATKAAVVGEDGIVLVVSKEGKVLRRGVGVPTWKMIRDDVDP 257
            +G  G GF  K  ++ ++GY+A PV+E  W+  +  E + A RQGA KA    E+GIVLVV  +GKV+ R VG P W ++ + V+P
Sbjct:  365 EGGKGGGFGEKRPSWRKQGYIAEPVDEESWRAALRKEIQDAERQGAGKAK---EEGIVLVVRNDGKVVARRVGTPDWTLVLEAVEP 447
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BLAST of mRNA_H-paniculata_contig31156.8427.1 vs. uniprot
Match: A0A7S2S088_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S088_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.030e-5
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 3 
Query:   18 KGFAKPMNYDEEGYVAVPVNEG-------EWKDLMALEFEAATRQ--GATKAAVVGEDGIVLVVSKEGKVLRRGVGVPTWKMIRDDVDP 257
            KGFAK     +     +P           +W   +  E + A  Q  GAT   +  E GIV+V++++GK++RRG+GVP W  + DD+ P
Sbjct:  210 KGFAKDTLISKPYIARIPETSDVSANPVEDWASYIQRELDTAVSQSPGATTVDLKAE-GIVVVLNRDGKIVRRGLGVPLWATVIDDLAP 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31156.8427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEG6_9PHAE5.890e-2662.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z880_9STRA4.340e-1651.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4FNK1_VITBC1.990e-1143.02Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2S088_9STRA6.030e-533.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31156contigH-paniculata_contig31156:929..2796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D7FLE8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3493)
EggNOG OGs2DEZ3@1,2S5R7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size463
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31156.8427.1prot_H-paniculata_contig31156.8427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31156 964..2608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.117095-UTR-H-paniculata_contig31156:928..9631622929958.117095-UTR-H-paniculata_contig31156:928..963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31156 929..963 +
1691481086.5966945-UTR-H-paniculata_contig31156:928..9631691481086.5966945-UTR-H-paniculata_contig31156:928..963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31156 929..963 +
1622929958.6431873-UTR-H-paniculata_contig31156:2608..27961622929958.6431873-UTR-H-paniculata_contig31156:2608..2796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31156 2609..2796 +
1691481086.6245003-UTR-H-paniculata_contig31156:2608..27961691481086.6245003-UTR-H-paniculata_contig31156:2608..2796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31156 2609..2796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.6186793-CDS-H-paniculata_contig31156:963..10051622929958.6186793-CDS-H-paniculata_contig31156:963..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31156 964..1005 +
1691481086.6069984-CDS-H-paniculata_contig31156:963..10051691481086.6069984-CDS-H-paniculata_contig31156:963..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31156 964..1005 +
1622929958.629372-CDS-H-paniculata_contig31156:2410..26081622929958.629372-CDS-H-paniculata_contig31156:2410..2608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31156 2411..2608 +
1691481086.6155622-CDS-H-paniculata_contig31156:2410..26081691481086.6155622-CDS-H-paniculata_contig31156:2410..2608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31156 2411..2608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31156.8427.1

>prot_H-paniculata_contig31156.8427.1 ID=prot_H-paniculata_contig31156.8427.1|Name=mRNA_H-paniculata_contig31156.8427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MNYDEEGYVAVPVNEGEWKDLMALEFEAATRQGATKAAVVGEDGIVLVVS
KEGKVLRRGVGVPTWKMIRDDVDPPKKKK*
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mRNA from alignment at H-paniculata_contig31156:929..2796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31156.8427.1 ID=mRNA_H-paniculata_contig31156.8427.1|Name=mRNA_H-paniculata_contig31156.8427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1868bp|location=Sequence derived from alignment at H-paniculata_contig31156:929..2796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGGCTCTGGGGGGAAAGGATTTGCGAAGCCCATGAACTACGACGAG
GAGGGATATGTGGCCGTTCCCGTCAACGTGAGTTATGGTTGTGTTTGAAT
GGTAGTATTGATAGCAGCAGCAGAAGCATTGGTTTAGAAATGAGAGAGTG
GCGTGTTTGGTGGAAGCAAAATGGATGATGGAACATGGGGGGGGGGGTCT
CTTCTTTGTGAGTGATTCTAATTTGGTAGCTCGAATCGTTTTGCAAGCAA
ATGTATTTCTTCATGTGTCAGGTAGAGTTAGTTGTGTTGTGTTGACGGAT
AAAGAGGTGTCGCCTTTTTTGAAGGAAGTAACGGAAGAGGGAGTCCAGAA
GGGAGGAAGACCCTACAATCAGTCAGCCAGTGTGGCTCCTACCCCGCAGA
GGAATAAGTAACTCTGGTCTGTTGAAGGAATTGTAGAAATACTTTGGTAA
AATACTTCGGTATGGAAGCATCGGTAAAGGTTTTTGCCTCAACCTTCCGG
GGGTTTAAAACCTTCCCCCCCCCCAAAAAAAAAGTCAGCCAGTCAGTCTG
CTTACAGAAACAGCATTATTGTGTTAAAATACCTTTCCTTTCCCAGTTGC
TTCATGAATATAGAATCCGATCAACGACACAAAACATTGCCCGCAAGAAA
GTGTCGGTTCAATTTTGAACGGTCGCGCTGCGTCCTTGAGAAGTATATTT
GCCGCTCTCCCTCCATGACCCCCCCCCCCCTCCAATTTGGTGGATCAAAC
ATAGGCAGGGAAAAAAACCCCGATTTAAGCCAGGAAGGTCGGAACGCCCT
TGGTACTAAGTAGTAAGTGCTGTAAGTAAAAACGATAACGTGGGTATTTT
TGTCCCCCGCCTTTTATTTTTCGCTTCTTTTTTATTTTTTTTATTAAAAA
AAAAAAATCAAGATTTGTGATACAAAAAATGGGAGGAAAAAAAAATCGAT
ATAGGGCTATATTCGCAAGGAACAAACAGTTCAACCCCCCCCCAAAAAAA
TACGAATAATTGGCATATTTGCGACTAAATTTTTTTTAAAGATATTCGCC
TGAATTTCAAAATGAGCAGAAACCTGTCCATTCGATTTACGAGTATTATT
AGTAGTCGTGGGTCGTCCGGGTCACATAGAATACACGAGCTCATCTTGAA
ACTCAGGCGAATACTTGAAAATTTTCGTGGCGACTACGCCAAGTAGTCGT
ATTTGTCCGGGGATGAAATACTTACAAGCGACCATTTTTCTTTTATAATT
ATTTCGAAAAATTCGAGGAAAGAAAAAGTCATGTTCCAAAATCAAAATTG
CACATAAATGACCTCGTATATATATATATATATATGCGCTCAAAATTCGA
TTTTTTTTTTTTTTCGCCATTTTTTTTCAAAAAAACAAAAACAGTTGAAA
AAACATAATAGTAGCATCCTGTCCTCCACCTGGTTGATACATAACAAACA
GTTACATGTCATTTTCCTCGCTTATCGCGCAGGAGGGAGAATGGAAGGAC
CTTATGGCCCTCGAGTTCGAGGCGGCTACGAGGCAGGGAGCCACGAAGGC
TGCCGTCGTGGGCGAAGACGGGATTGTGTTGGTAGTGAGCAAGGAAGGGA
AGGTCTTGCGGAGAGGAGTAGGCGTTCCGACCTGGAAAATGATCCGAGAC
GATGTCGATCCACCCAAGAAAAAAAAATAAATGAGGGAAAAAAAAAAACA
GAAGAGTGAAGCATCCATCGGAAGTGGTCGATCGAGGGGAGGAGGTGCGA
CTTCGTTGCGAGAAGGACTCCGGGATCGGGGTGGCGGGGCCGAGATTGAT
GTTTTATTTAACCCCCGGAAGGCTGAGGCAAAAACCTTACCGATGCTTCC
ATATTTGCGTATTTTACC
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Coding sequence (CDS) from alignment at H-paniculata_contig31156:929..2796+

>mRNA_H-paniculata_contig31156.8427.1 ID=mRNA_H-paniculata_contig31156.8427.1|Name=mRNA_H-paniculata_contig31156.8427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig31156:929..2796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTACGACGAGGAGGGATATGTGGCCGTTCCCGTCAACATGAACTA
CGACGAGGAGGGATATGTGGCCGTTCCCGTCAACGAGGGAGAATGGAAGG
ACCTTATGGCCCTCGAGTTCGAGGCGGCTACGAGGCAGGGAGCCACGAAG
GCTGCCGTCGTGGGCGAAGACGGGATTGTGTTGGTAGTGAGCAAGGAAGG
GAAGGTCTTGCGGAGAGGAGTAGGCGTTCCGACCTGGAAAATGATCCGAG
ACGATGTCGATCCACCCAAGAAAAAAAAATAAGAGGGAGAATGGAAGGAC
CTTATGGCCCTCGAGTTCGAGGCGGCTACGAGGCAGGGAGCCACGAAGGC
TGCCGTCGTGGGCGAAGACGGGATTGTGTTGGTAGTGAGCAAGGAAGGGA
AGGTCTTGCGGAGAGGAGTAGGCGTTCCGACCTGGAAAATGATCCGAGAC
GATGTCGATCCACCCAAGAAAAAAAAATAA
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