mRNA_H-paniculata_contig31150.8426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31150.8426.1
Unique NamemRNA_H-paniculata_contig31150.8426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31150.8426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31150contigH-paniculata_contig31150:1433..1990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.0725389-CDS-H-paniculata_contig31150:1432..19901622929958.0725389-CDS-H-paniculata_contig31150:1432..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31150 1433..1990 +
1691481086.5843606-CDS-H-paniculata_contig31150:1432..19901691481086.5843606-CDS-H-paniculata_contig31150:1432..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31150 1433..1990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31150.8426.1prot_H-paniculata_contig31150.8426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31150 1433..1990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31150.8426.1

>prot_H-paniculata_contig31150.8426.1 ID=prot_H-paniculata_contig31150.8426.1|Name=mRNA_H-paniculata_contig31150.8426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
RCLRCKLEGHFWRDCGAWIIPAHSQEEAALASVESDHGGVHACAVLGISS
ESTDGLERWRSNSGATYHITCFPEYMSDLRPSSHKVRVGGGRLVGIESYV
TLTIVLQNYGGNATVMLRDVAYVPQLHFNLFSLKVAQKRGEMYVPHTDDS
ISLFDGKLSFPDEGPVNSLWGYRVESTRDAVAFPV*
back to top

mRNA from alignment at H-paniculata_contig31150:1433..1990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31150.8426.1 ID=mRNA_H-paniculata_contig31150.8426.1|Name=mRNA_H-paniculata_contig31150.8426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at H-paniculata_contig31150:1433..1990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGTCTCCGTTGCAAGTTGGAAGGCCATTTCTGGCGGGATTGTGGGGC
GTGGATTATTCCTGCACATTCGCAGGAAGAGGCCGCTTTGGCTTCTGTCG
AGAGTGACCATGGTGGGGTCCATGCGTGTGCGGTGCTTGGTATTTCGAGT
GAAAGTACTGATGGCCTAGAGAGATGGCGTAGTAACAGTGGTGCTACTTA
CCACATCACGTGTTTCCCCGAGTACATGTCTGACCTCCGCCCCAGCAGTC
ATAAGGTTAGAGTTGGAGGTGGTAGACTAGTTGGCATAGAAAGCTATGTT
ACACTGACTATAGTGTTGCAAAACTATGGAGGAAATGCCACGGTGATGCT
TCGAGATGTTGCGTATGTTCCCCAACTACATTTTAACTTGTTCTCGCTGA
AGGTAGCACAGAAGCGGGGCGAGATGTATGTTCCCCACACCGATGATAGC
ATATCCTTGTTCGATGGGAAACTATCGTTCCCTGACGAAGGTCCTGTTAA
CTCACTTTGGGGTTACAGGGTAGAGAGTACACGAGATGCGGTCGCTTTTC
CTGTTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31150:1433..1990+

>mRNA_H-paniculata_contig31150.8426.1 ID=mRNA_H-paniculata_contig31150.8426.1|Name=mRNA_H-paniculata_contig31150.8426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig31150:1433..1990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGTCTCCGTTGCAAGTTGGAAGGCCATTTCTGGCGGGATTGTGGGGC
GTGGATTATTCCTGCACATTCGCAGGAAGAGGCCGCTTTGGCTTCTGTCG
AGAGTGACCATGGTGGGGTCCATGCGTGTGCGGTGCTTGGTATTTCGAGT
GAAAGTACTGATGGCCTAGAGAGATGGCGTAGTAACAGTGGTGCTACTTA
CCACATCACGTGTTTCCCCGAGTACATGTCTGACCTCCGCCCCAGCAGTC
ATAAGGTTAGAGTTGGAGGTGGTAGACTAGTTGGCATAGAAAGCTATGTT
ACACTGACTATAGTGTTGCAAAACTATGGAGGAAATGCCACGGTGATGCT
TCGAGATGTTGCGTATGTTCCCCAACTACATTTTAACTTGTTCTCGCTGA
AGGTAGCACAGAAGCGGGGCGAGATGTATGTTCCCCACACCGATGATAGC
ATATCCTTGTTCGATGGGAAACTATCGTTCCCTGACGAAGGTCCTGTTAA
CTCACTTTGGGGTTACAGGGTAGAGAGTACACGAGATGCGGTCGCTTTTC
CTGTTTAGAGATGTCTCCGTTGCAAGTTGGAAGGCCATTTCTGGCGGGAT
TGTGGGGCGTGGATTATTCCTGCACATTCGCAGGAAGAGGCCGCTTTGGC
TTCTGTCGAGAGTGACCATGGTGGGGTCCATGCGTGTGCGGTGCTTGGTA
TTTCGAGTGAAAGTACTGATGGCCTAGAGAGATGGCGTAGTAACAGTGGT
GCTACTTACCACATCACGTGTTTCCCCGAGTACATGTCTGACCTCCGCCC
CAGCAGTCATAAGGTTAGAGTTGGAGGTGGTAGACTAGTTGGCATAGAAA
GCTATGTTACACTGACTATAGTGTTGCAAAACTATGGAGGAAATGCCACG
GTGATGCTTCGAGATGTTGCGTATGTTCCCCAACTACATTTTAACTTGTT
CTCGCTGAAGGTAGCACAGAAGCGGGGCGAGATGTATGTTCCCCACACCG
ATGATAGCATATCCTTGTTCGATGGGAAACTATCGTTCCCTGACGAAGGT
CCTGTTAACTCACTTTGGGGTTACAGGGTAGAGAGTACACGAGATGCGGT
CGCTTTTCCTGTTTAG
back to top