mRNA_H-paniculata_contig31090.8409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31090.8409.1
Unique NamemRNA_H-paniculata_contig31090.8409.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31090.8409.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.860e-7
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   19 SARQGHEEAKALLKSALRVREKSLGLKHLDTADTLLKLGGL 141
            SAR  HEEA  L + AL VRE+ LG KHLDTADTL KLGGL
Sbjct:  865 SARLAHEEATLLCQWALHVREECLGPKHLDTADTLRKLGGL 905
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31090.8409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE2.860e-770.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31090contigH-paniculata_contig31090:2390..2530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.4200718-CDS-H-paniculata_contig31090:2389..25301622929956.4200718-CDS-H-paniculata_contig31090:2389..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31090 2390..2530 -
1691481085.882879-CDS-H-paniculata_contig31090:2389..25301691481085.882879-CDS-H-paniculata_contig31090:2389..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31090 2390..2530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31090.8409.1prot_H-paniculata_contig31090.8409.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31090 2390..2530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31090.8409.1

>prot_H-paniculata_contig31090.8409.1 ID=prot_H-paniculata_contig31090.8409.1|Name=mRNA_H-paniculata_contig31090.8409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
VFWSSFSARQGHEEAKALLKSALRVREKSLGLKHLDTADTLLKLGGL
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mRNA from alignment at H-paniculata_contig31090:2390..2530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31090.8409.1 ID=mRNA_H-paniculata_contig31090.8409.1|Name=mRNA_H-paniculata_contig31090.8409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig31090:2390..2530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTTGGTCATCATTCAGCGCACGACAGGGTCACGAGGAGGCGAAAGC
GCTTCTGAAGAGCGCGCTCAGGGTGAGGGAGAAGTCGCTGGGGTTGAAGC
ATCTAGATACTGCCGACACTCTGCTCAAGCTGGGGGGTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig31090:2390..2530-

>mRNA_H-paniculata_contig31090.8409.1 ID=mRNA_H-paniculata_contig31090.8409.1|Name=mRNA_H-paniculata_contig31090.8409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig31090:2390..2530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTTGGTCATCATTCAGCGCACGACAGGGTCACGAGGAGGCGAAAGC
GCTTCTGAAGAGCGCGCTCAGGGTGAGGGAGAAGTCGCTGGGGTTGAAGC
ATCTAGATACTGCCGACACTCTGCTCAAGCTGGGGGGTTTGGTTTTTTGG
TCATCATTCAGCGCACGACAGGGTCACGAGGAGGCGAAAGCGCTTCTGAA
GAGCGCGCTCAGGGTGAGGGAGAAGTCGCTGGGGTTGAAGCATCTAGATA
CTGCCGACACTCTGCTCAAGCTGGGGGGTTTG
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