mRNA_H-paniculata_contig31071.8404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31071.8404.1
Unique NamemRNA_H-paniculata_contig31071.8404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31071.8404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31071contigH-paniculata_contig31071:1949..2471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.852105-CDS-H-paniculata_contig31071:1948..24701622929955.852105-CDS-H-paniculata_contig31071:1948..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31071 1949..2470 +
1691481085.5959716-CDS-H-paniculata_contig31071:1948..24701691481085.5959716-CDS-H-paniculata_contig31071:1948..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31071 1949..2470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31071.8404.1prot_H-paniculata_contig31071.8404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31071 1949..2470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31071.8404.1

>prot_H-paniculata_contig31071.8404.1 ID=prot_H-paniculata_contig31071.8404.1|Name=mRNA_H-paniculata_contig31071.8404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
PLLLAFHESGFYDPYVVLEDGDESYHHPQPLSTRKLYQEALRRASFEIFA
QSSKRSSGDAIPGSGGSNGKGSSKTAAGMRTMAMPHGQCGTVMMSSVAAS
QQQNTQLEEDMIYYGDHHQSPPRRSDKEDPTSSLKRKKEEKGETLEGQER
SWGKYYGSDAGGGGGGGGGGDDVK
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mRNA from alignment at H-paniculata_contig31071:1949..2471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31071.8404.1 ID=mRNA_H-paniculata_contig31071.8404.1|Name=mRNA_H-paniculata_contig31071.8404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=523bp|location=Sequence derived from alignment at H-paniculata_contig31071:1949..2471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTGCTTCTGGCGTTCCACGAATCAGGTTTTTACGATCCCTACGTTGT
GCTCGAAGACGGCGACGAGAGCTACCACCACCCGCAGCCTTTGTCCACCC
GGAAGCTCTACCAAGAGGCGTTGCGCAGAGCATCTTTCGAAATCTTCGCA
CAGTCGTCTAAAAGAAGCAGCGGTGATGCTATCCCTGGTAGTGGTGGTAG
TAATGGCAAAGGTTCTTCCAAAACGGCCGCGGGCATGCGTACGATGGCGA
TGCCGCACGGGCAGTGCGGCACAGTGATGATGTCGTCTGTGGCGGCGTCT
CAACAGCAAAACACGCAGTTGGAGGAAGACATGATCTATTACGGTGACCA
CCACCAATCCCCCCCCCGACGGAGCGACAAAGAAGATCCTACGTCTTCTC
TGAAGAGAAAGAAGGAAGAGAAGGGAGAGACTCTGGAAGGACAAGAAAGA
TCATGGGGTAAATATTATGGGAGTGACGCTGGTGGTGGTGGTGGTGGTGG
TGGTGGTGGTGATGATGTTAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig31071:1949..2471+

>mRNA_H-paniculata_contig31071.8404.1 ID=mRNA_H-paniculata_contig31071.8404.1|Name=mRNA_H-paniculata_contig31071.8404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig31071:1949..2471+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTGCTTCTGGCGTTCCACGAATCAGGTTTTTACGATCCCTACGTTGT
GCTCGAAGACGGCGACGAGAGCTACCACCACCCGCAGCCTTTGTCCACCC
GGAAGCTCTACCAAGAGGCGTTGCGCAGAGCATCTTTCGAAATCTTCGCA
CAGTCGTCTAAAAGAAGCAGCGGTGATGCTATCCCTGGTAGTGGTGGTAG
TAATGGCAAAGGTTCTTCCAAAACGGCCGCGGGCATGCGTACGATGGCGA
TGCCGCACGGGCAGTGCGGCACAGTGATGATGTCGTCTGTGGCGGCGTCT
CAACAGCAAAACACGCAGTTGGAGGAAGACATGATCTATTACGGTGACCA
CCACCAATCCCCCCCCCGACGGAGCGACAAAGAAGATCCTACGTCTTCTC
TGAAGAGAAAGAAGGAAGAGAAGGGAGAGACTCTGGAAGGACAAGAAAGA
TCATGGGGTAAATATTATGGGAGTGACGCTGGTGGTGGTGGTGGTGGTGG
TGGTGGTGGTGATGATGTTAAGCCCCTGCTTCTGGCGTTCCACGAATCAG
GTTTTTACGATCCCTACGTTGTGCTCGAAGACGGCGACGAGAGCTACCAC
CACCCGCAGCCTTTGTCCACCCGGAAGCTCTACCAAGAGGCGTTGCGCAG
AGCATCTTTCGAAATCTTCGCACAGTCGTCTAAAAGAAGCAGCGGTGATG
CTATCCCTGGTAGTGGTGGTAGTAATGGCAAAGGTTCTTCCAAAACGGCC
GCGGGCATGCGTACGATGGCGATGCCGCACGGGCAGTGCGGCACAGTGAT
GATGTCGTCTGTGGCGGCGTCTCAACAGCAAAACACGCAGTTGGAGGAAG
ACATGATCTATTACGGTGACCACCACCAATCCCCCCCCCGACGGAGCGAC
AAAGAAGATCCTACGTCTTCTCTGAAGAGAAAGAAGGAAGAGAAGGGAGA
GACTCTGGAAGGACAAGAAAGATCATGGGGTAAATATTATGGGAGTGACG
CTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATGTTAAG
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