mRNA_H-paniculata_contig3107.8403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.800e-40 Identity = 106/267 (39.70%), Postives = 119/267 (44.57%), Query Frame = 1
Query: 148 EQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLK----------------------------------------------------------------------------------------SFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQAFEV-----------------------------------PILNRASFDVRLMACVWLVAPGPKEPYGASSEDQQAQ 579
E+QA+ G + GWMQQLLTKVLANMSI VSNLV KY+DADVV SA LK S +CFSADPDR+WTP FASLDDPFG LHKLV ASDLT+CL+R PD+S+ Q QAFEV PILNRASF+V L+ACVWLVAPGP E A+ EDQQ Q
Sbjct: 72 EEQAAPAGVS-GWMQQLLTKVLANMSIEVSNLVLKYEDADVVLSAALKLSPTSWIVQQCCCPACTTCTMPYRAFPTNTLRRDMEARGEPGGESPDLLLSMARGNTATPELVVQQYHNATAVMKSYAACLLHVQPQQSLVCFSADPDREWTPAFASLDDPFGFLHKLVHASDLTVCLDRYCAPDSSRRRQVQAFEVLRPASAPFRLGRGCSSVQLPRMNCYVVVGFYVKKVPILNRASFEVHLLACVWLVAPGPPESSFAAWEDQQTQ 337
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A024G1K2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1K2_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.440e-27 Identity = 74/178 (41.57%), Postives = 106/178 (59.55%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSND----TRAREEQQASSTGAAT-------GWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKG-WQTQAFEVPILNRASFDVRL 504
RGFI+ELRIHIPWT+L S+PIE+K T+EII+ TT +S ND T A ++ S+G AT W+ + L K+L N+++ V+NLV KY++++VV S L S SA W FA ++ P + K++ A DLTI L+R E +T + +E+PILNR S R+
Sbjct: 66 RGFIRELRIHIPWTQLLSQPIEVKLYTIEIIL--TTVKSQNDAQRSTSASTKRSRVSSGQATQLDEAKPSWIHEALQKILVNVTVQVNNLVVKYEESEVVLSMALGSLEIKSARNRLGWMAGFAEVEGPQQEICKIITAGDLTIFLDRYTESETPDAPRRVIGYEIPILNRGSISSRV 241
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: H3H1A7_PHYRM (Chorein N-terminal domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1A7_PHYRM) HSP 1 Score: 111 bits (277), Expect = 9.390e-26 Identity = 66/168 (39.29%), Postives = 97/168 (57.74%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-CYEPDTSKGWQTQA--FEVPILNRASFDVR 501
RGFI+ELRIHIPWT+L S+PIE+K T+E+I++ + + A + + +GW+ L K+LAN+S+ V+NLV KY+ DVV S L + +SA W +F L + K + A D+TI L+R E DT G + + +EVP+L+R S VR
Sbjct: 65 RGFIRELRIHIPWTQLLSQPIEVKLYTIELILTAKSERGAAADAAIDAAEDKIEQPKSGWLHDTLQKILANVSVQVNNLVLKYEHDDVVFSIALGTLDFYSASERDHWRRSFEELGVGRRAICKRIDAKDVTIFLDRYTSEADTKDGVRRKVLGYEVPVLSRTSASVR 232
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: F0VZU0_9STRA (Uncharacterized protein AlNc14C3G419 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZU0_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.010e-25 Identity = 69/182 (37.91%), Postives = 103/182 (56.59%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPT---------THESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCY---EPDTSKGWQTQAFEVPILNRASFDVRLMACV 516
RGFI+ELRIHIPWT+L S+PIE+K T+EII++ T S+ R+ Q + W+ + L K+L N+++ V+NLV KY+++++V S L S SA WT FA + P + KL+ A+DLTI L+R E DT + + +E+P+LNR S R+ C+
Sbjct: 66 RGFIRELRIHIPWTQLLSQPIEVKLYTIEIILTTVDSKKGGQRPTSPSTKRNRSPSGQDTQFDESKPSWIHESLQKILVNVTVQVNNLVVKYEESEIVFSMALGSLEIKSAKNRLGWTAGFAEAEGPQQKICKLINATDLTIFLDRYTKNKEVDTPR--RVIGYEIPMLNRGSISSRVRLCL 245
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A5D6Y3T1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3T1_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.880e-25 Identity = 70/191 (36.65%), Postives = 102/191 (53.40%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSNDTRAR-----EEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQAF------EVPILNRASFDVRLMACVWLVAPGPKEP 546
RGFI+ELRIHIPWT+L S+PIE+K T+E+I+ T ++ RA+ E+ + +GW+ L ++LAN+SI V+NLV KY+ D+V S L + +SA +DW +F P + K + A DLTI L+R Y S + + EVP+L R S R + A P+ P
Sbjct: 66 RGFIRELRIHIPWTQLLSQPIEVKLYTIELIL---TARGDDERRAKRTASPEQPEPKMEQPKSGWLHDSLQRILANISIQVNNLVLKYEQDDIVLSVALGTLDIYSASAAKDWKRSFEEPQGPAQAISKRIDAKDLTIFLDR-YTRGRSDSKTAEVYRKVVGYEVPVLTRTSLSARARLLMKPRAAAPETP 252
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A833SYH9_PHYIN (Vacuolar-sorting-associated 13 protein C-terminal n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYH9_PHYIN) HSP 1 Score: 112 bits (279), Expect = 1.180e-24 Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHES-SNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-----CYEPDTSKGW---QTQAFEVPILNRASFDVR 501
RGFI+ELRIHIPWT+L S+PIE+K T+E+I++ + ++ A +++A +GW+ +L K+LAN+S+ ++NLV KY+ DVV S L + +SA W +F L + K + A D+TI L+R + DT +G + +EVP+LNR S VR
Sbjct: 65 RGFIRELRIHIPWTQLLSQPIEVKLYTIELILTGKNSAARTSSVDAAVDREAEIDQPKSGWIHDMLQKILANVSVQINNLVLKYEHDDVVFSIALGTLDFYSASESDGWKRSFEELKGGRRAICKRIDAKDVTIFLDRYKSDGAAKEDTRQGTVRRKVVGYEVPVLNRTSVSVR 238
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A2D4C9P6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9P6_PYTIN) HSP 1 Score: 110 bits (276), Expect = 2.420e-24 Identity = 65/184 (35.33%), Postives = 105/184 (57.07%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISP----TTHESSNDTRAREEQQASSTGAA---------TGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-----CYEPDTSK-GWQTQAFEVPILNRASFDVR 501
RGFI+ELRIHIPWT+L S+PIEIK TVE+I++ H+ + T R+ ++ S +A +GW++ L K+L N+++ ++NLV KY+ D+V S L + ++A+ +DWT F + ++ A DLT+ L+R + P TS+ + +E+P+LNR S +R
Sbjct: 66 RGFIRELRIHIPWTQLLSQPIEIKLYTVEMILTAQEADAKHQRNASTDKRKSSRSKSMESADDDEIENPKSGWLRDTLQKILTNVTLQINNLVLKYEQDDIVLSVALGTLDFYAANDGKDWTRVFTEPKGKDQSIARVAEAKDLTVFLDRYERDETWHPATSRVPRRVSGYELPLLNRTSIVMR 249
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A3M6VGT0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGT0_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.040e-24 Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISP-------TTHESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLER-CYEPDTSKGWQTQ-------AFEVPILNRASFDVR 501
RGFI+ELRIHIPWT+L S+ IE+K T+E+I++ ++ DT +E+Q +GW+ L K+LAN+++ V+NLV KY+ DVV S L + +SA+ +W +F L + K + A+D+TI L+R E +T G Q +EVP+L+R S VR
Sbjct: 65 RGFIRELRIHIPWTQLLSQAIEVKLYTIELILTAKKDCQERVQRDTFVDTMTLKEEQEEMEQPKSGWIHDTLQKILANVTVQVNNLVLKYEHDDVVFSIALGTLNFYSANEKHEWKRSFEELKGKQRTICKRIDANDVTIFLDRYTSEGNTKLGMQNDPVRRNVVGYEVPVLSRTSASVR 244
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A8K1CF18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF18_PYTOL) HSP 1 Score: 110 bits (274), Expect = 5.270e-24 Identity = 67/189 (35.45%), Postives = 101/189 (53.44%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIIS---PTTHESSNDTR-------------AREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQA--------FEVPILNRASFDVR 501
RGFI+ELRIHIPWT+L S+PIE+K TVE+I++ P+ S + A ++ + +GW++ L K+LAN++I V+NLV KY+ DVV S L C+S R W +F + +++ A DLTI L+R Y D S+ + + +EVP+L+R S +R
Sbjct: 66 RGFIRELRIHIPWTQLLSQPIEVKLYTVELILTARDPSRRHSVDSAMXXXXXXXXXXXXXASSKEASEIENPKSGWLRDTLQKILANVTIQVNNLVMKYEQDDVVLSVALGVLDCYSVSETRGWVRSFVDPQGSTRAISRVIEAKDLTIFLDR-YTSDRSQSDPSASEIRRRVVGYEVPVLSRTSLSIR 253
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Match: A0A0W8B040_PHYNI (Vacuolar protein sorting-associated protein 13B n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8B040_PHYNI) HSP 1 Score: 108 bits (269), Expect = 2.510e-23 Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 7 RGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISP---TTHESSNDTRAREEQQASSTGAATGWMQQLLTKVLANMSISVSNLVFKYKDADVVASAFLKSFMCFSADPDRDWTPTFASLDDPFGLLHKLVRASDLTICLERCYEPDTSKGWQTQ--------AFEVPILNRASFDVR 501
RGFI+ELRIHIPWT+L S+PIE+K T+E+I++ + +S DT E + +GW+ L ++LAN+S+ V+NLV KY++ DVV S L + +SA+ W +F L + K + A D+TI L+R +K Q +EVP+L+R S VR
Sbjct: 65 RGFIRELRIHIPWTQLLSQPIEVKLYTIELILTGKNRSARAASVDTAVDREPEIEQ--PKSGWINDTLQRILANISVQVNNLVLKYENDDVVFSIALGTLDFYSANEKESWKRSFEELKGGRRAICKRIDAKDVTIFLDRYTNDGVTKDGGRQDSVRRKVIGYEVPVLSRTSASVR 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3107.8403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3107.8403.1 >prot_H-paniculata_contig3107.8403.1 ID=prot_H-paniculata_contig3107.8403.1|Name=mRNA_H-paniculata_contig3107.8403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp MCRGFIKELRIHIPWTRLQSRPIEIKFNTVEIIISPTTHESSNDTRAREEback to top mRNA from alignment at H-paniculata_contig3107:2264..4690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3107.8403.1 ID=mRNA_H-paniculata_contig3107.8403.1|Name=mRNA_H-paniculata_contig3107.8403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2427bp|location=Sequence derived from alignment at H-paniculata_contig3107:2264..4690- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3107:2264..4690- >mRNA_H-paniculata_contig3107.8403.1 ID=mRNA_H-paniculata_contig3107.8403.1|Name=mRNA_H-paniculata_contig3107.8403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig3107:2264..4690- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |