mRNA_H-paniculata_contig31038.8394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31038.8394.1
Unique NamemRNA_H-paniculata_contig31038.8394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31038.8394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31038contigH-paniculata_contig31038:183..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31038.8394.1prot_H-paniculata_contig31038.8394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31038 227..691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.4671352-UTR-H-paniculata_contig31038:182..2261622929954.4671352-UTR-H-paniculata_contig31038:182..226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31038 183..226 +
1691481085.0609329-UTR-H-paniculata_contig31038:182..2261691481085.0609329-UTR-H-paniculata_contig31038:182..226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31038 183..226 +
1622929954.4967823-UTR-H-paniculata_contig31038:691..7381622929954.4967823-UTR-H-paniculata_contig31038:691..738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31038 692..738 +
1691481085.081783-UTR-H-paniculata_contig31038:691..7381691481085.081783-UTR-H-paniculata_contig31038:691..738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31038 692..738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.4818804-CDS-H-paniculata_contig31038:226..6911622929954.4818804-CDS-H-paniculata_contig31038:226..691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31038 227..691 +
1691481085.0720015-CDS-H-paniculata_contig31038:226..6911691481085.0720015-CDS-H-paniculata_contig31038:226..691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31038 227..691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31038.8394.1

>prot_H-paniculata_contig31038.8394.1 ID=prot_H-paniculata_contig31038.8394.1|Name=mRNA_H-paniculata_contig31038.8394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MCRAVVRCFVLQTRQIPILPSKTWEGSGRETAEMNILWNCTLVLPAPSPS
HLILPREHAHHLSVADEVEQRLIDVNGVDASSVHFAVAGDVVEDEVHPLG
VKSDGHPDRACDFTEKASLLSICSLTRADNLRGCLSPTPNVFANLELTPL
GSLS*
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mRNA from alignment at H-paniculata_contig31038:183..738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31038.8394.1 ID=mRNA_H-paniculata_contig31038.8394.1|Name=mRNA_H-paniculata_contig31038.8394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig31038:183..738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTCGGTGTCGACGTTACGTAGGCCTCGTGCTCATTGCCCTTCATGTGT
CGCGCTGTAGTTCGTTGCTTCGTGCTGCAAACCCGCCAGATCCCGATCTT
GCCGTCGAAAACATGGGAAGGATCCGGGCGCGAAACGGCGGAGATGAACA
TTCTTTGGAATTGTACTCTTGTGCTGCCTGCACCTTCACCGAGCCACCTT
ATCCTCCCCCGCGAACATGCACACCATCTCTCGGTCGCGGATGAGGTAGA
ACAACGCCTCATCGATGTAAATGGTGTTGACGCCAGTTCTGTACATTTTG
CGGTTGCAGGAGATGTGGTCGAGGATGAAGTCCACCCTCTTGGCGTAAAG
TCCGACGGTCACCCAGATCGTGCTTGTGATTTCACGGAGAAGGCGTCCCT
CCTGTCTATCTGTTCATTGACACGGGCCGATAACCTTCGAGGGTGTCTCT
CTCCCACTCCAAACGTTTTCGCCAACTTAGAACTCACACCCCTCGGGAGC
CTCTCGTAATTCAGAGGAAACGTCAACACATAACGCAAAGCAAGCGCGGT
CTGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig31038:183..738+

>mRNA_H-paniculata_contig31038.8394.1 ID=mRNA_H-paniculata_contig31038.8394.1|Name=mRNA_H-paniculata_contig31038.8394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig31038:183..738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCGCGCTGTAGTTCGTTGCTTCGTGCTGCAAACCCGCCAGATCCC
GATCTTGCCGTCGAAAACATGGGAAGGATCCGGGCGCGAAACGGCGGAGA
TGAACATTCTTTGGAATTGTACTCTTGTGCTGCCTGCACCTTCACCGAGC
CACCTTATCCTCCCCCGCGAACATGCACACCATCTCTCGGTCGCGGATGA
GGTAGAACAACGCCTCATCGATGTAAATGGTGTTGACGCCAGTTCTGTAC
ATTTTGCGGTTGCAGGAGATGTGGTCGAGGATGAAGTCCACCCTCTTGGC
GTAAAGTCCGACGGTCACCCAGATCGTGCTTGTGATTTCACGGAGAAGGC
GTCCCTCCTGTCTATCTGTTCATTGACACGGGCCGATAACCTTCGAGGGT
GTCTCTCTCCCACTCCAAACGTTTTCGCCAACTTAGAACTCACACCCCTC
GGGAGCCTCTCGTAAATGTGTCGCGCTGTAGTTCGTTGCTTCGTGCTGCA
AACCCGCCAGATCCCGATCTTGCCGTCGAAAACATGGGAAGGATCCGGGC
GCGAAACGGCGGAGATGAACATTCTTTGGAATTGTACTCTTGTGCTGCCT
GCACCTTCACCGAGCCACCTTATCCTCCCCCGCGAACATGCACACCATCT
CTCGGTCGCGGATGAGGTAGAACAACGCCTCATCGATGTAAATGGTGTTG
ACGCCAGTTCTGTACATTTTGCGGTTGCAGGAGATGTGGTCGAGGATGAA
GTCCACCCTCTTGGCGTAAAGTCCGACGGTCACCCAGATCGTGCTTGTGA
TTTCACGGAGAAGGCGTCCCTCCTGTCTATCTGTTCATTGACACGGGCCG
ATAACCTTCGAGGGTGTCTCTCTCCCACTCCAAACGTTTTCGCCAACTTA
GAACTCACACCCCTCGGGAGCCTCTCGTAA
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