mRNA_H-paniculata_contig31035.8393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31035.8393.1
Unique NamemRNA_H-paniculata_contig31035.8393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31035.8393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31035contigH-paniculata_contig31035:2576..2792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size102
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31035.8393.1prot_H-paniculata_contig31035.8393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31035 2639..2792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.402275-UTR-H-paniculata_contig31035:2575..26381622929954.402275-UTR-H-paniculata_contig31035:2575..2638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31035 2576..2638 -
1691481085.0263517-UTR-H-paniculata_contig31035:2575..26381691481085.0263517-UTR-H-paniculata_contig31035:2575..2638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31035 2576..2638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.413578-CDS-H-paniculata_contig31035:2638..26911622929954.413578-CDS-H-paniculata_contig31035:2638..2691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31035 2639..2691 -
1691481085.0378737-CDS-H-paniculata_contig31035:2638..26911691481085.0378737-CDS-H-paniculata_contig31035:2638..2691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31035 2639..2691 -
1622929954.4269557-CDS-H-paniculata_contig31035:2743..27921622929954.4269557-CDS-H-paniculata_contig31035:2743..2792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31035 2744..2792 -
1691481085.0484905-CDS-H-paniculata_contig31035:2743..27921691481085.0484905-CDS-H-paniculata_contig31035:2743..2792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31035 2744..2792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31035.8393.1

>prot_H-paniculata_contig31035.8393.1 ID=prot_H-paniculata_contig31035.8393.1|Name=mRNA_H-paniculata_contig31035.8393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
AGDTNPLTVKVYRNICATTTAALRLSRGCCCPG*
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mRNA from alignment at H-paniculata_contig31035:2576..2792-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31035.8393.1 ID=mRNA_H-paniculata_contig31035.8393.1|Name=mRNA_H-paniculata_contig31035.8393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=217bp|location=Sequence derived from alignment at H-paniculata_contig31035:2576..2792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTGACACTAACCCACTGACGGTTAAAGTATACCGCAACATCTGCGG
CACTGGGCGTGGTTTGCGAGGCAGGGTCACTTAGGACACGCAGAAAAGCA
GCAACAACAACTGCAGCTCTTCGTCTCTCCAGGGGCTGCTGTTGTCCGGG
CTGAAGATTTTGTAAACGAATCGGTTCTTGTCACAAGCACAACAACAACG
ATGACCAACATGATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig31035:2576..2792-

>mRNA_H-paniculata_contig31035.8393.1 ID=mRNA_H-paniculata_contig31035.8393.1|Name=mRNA_H-paniculata_contig31035.8393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig31035:2576..2792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTGACACTAACCCACTGACGGTTAAAGTATACCGCAACATCTGCGG
CGGGTGACACTAACCCACTGACGGTTAAAGTATACCGCAACATCTGCGCA
ACAACAACTGCAGCTCTTCGTCTCTCCAGGGGCTGCTGTTGTCCGGGCTG
ACAACAACAACTGCAGCTCTTCGTCTCTCCAGGGGCTGCTGTTGTCCGGG
CTGA
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