mRNA_H-paniculata_contig31028.8391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31028.8391.1
Unique NamemRNA_H-paniculata_contig31028.8391.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: D8LKT3_ECTSI (APH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT3_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 3.400e-80
Identity = 135/205 (65.85%), Postives = 155/205 (75.61%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALR---QTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRL---STAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHLPA 597
            SAHAVEREFR+LRALR    +DVPVP  LLLCED +V+GTPFYVMEFV GR+FSD+ LPG+ A +ER AAY S AETLA++H +DF   GL  +G  +GGY GRQV TL RVA KQ         EDAGP  G   +V DLR L    + V DR+ +VHGDFR+DNL+FHPTE RVIAVLDWELSTLGHPLAD+ANLCILHHLPA
Sbjct:   70 SAHAVEREFRILRALRLDPASDVPVPRPLLLCEDPAVIGTPFYVMEFVQGRIFSDAALPGL-APAERAAAYESAAETLARLHHVDFVRAGLGGFGRGEGGYLGRQVATLERVAAKQA--------EDAGPIEGFDGIVRDLRELIASGSVVQDRVAIVHGDFRIDNLVFHPTESRVIAVLDWELSTLGHPLADLANLCILHHLPA 265          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A6H5L392_9PHAE (APH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L392_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 8.990e-78
Identity = 134/205 (65.37%), Postives = 153/205 (74.63%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQ---TDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRL---STAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHLPA 597
            SAHAVEREFR+LRALR    ++VPVP  LLLCED  V+GT FYVMEFV GR+FSD+ LPG+ A +ER AAY S AETLA++H +DF   GL  +G  +GGY GRQV TL RVA KQ         EDAGP  G   VV DLR L    + V DR+ +VHGDFR+DNL+FHP EPRVIAVLDWELSTLGHPLAD+ANLCILHHLPA
Sbjct:  133 SAHAVEREFRILRALRLDPGSEVPVPRPLLLCEDPLVIGTAFYVMEFVQGRIFSDAALPGL-APAERAAAYESAAETLARLHHVDFMRAGLEGFGRVEGGYLGRQVATLERVAAKQA--------EDAGPIEGFDGVVRDLRELIASGSVVQDRVAIVHGDFRIDNLVFHPAEPRVIAVLDWELSTLGHPLADLANLCILHHLPA 328          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A835Z1G4_9STRA (Phosphotransferase enzyme family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G4_9STRA)

HSP 1 Score: 219 bits (559), Expect = 7.850e-64
Identity = 112/197 (56.85%), Postives = 140/197 (71.07%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHL 591
            SAHAVEREFR LRALR + VPVP A +LCEDA V+GTPFYVME V GR F D  LPG+ AR+ER A YAS    LA++H++DF A+GLAD+G +  G+F RQ+ TL RVA  Q         + AGP  GL  +   L     AVPD + L+HGD+R+DNL++H +EPRV+AVLDWELSTLGHP+AD+A+L   H +
Sbjct:  112 SAHAVEREFRALRALRGSAVPVPAAHVLCEDAQVIGTPFYVMELVAGRGFDDPALPGV-ARAERRAIYASAVRALARLHQVDFAAVGLADFGRAGAGFFARQLRTLTRVAAAQA--------QHAGPLHGLDGLAERLAGALKAVPDAVALMHGDYRLDNLMYHASEPRVVAVLDWELSTLGHPMADLASLVGSHFI 299          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A4D9CXK6_9STRA (APH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXK6_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.420e-63
Identity = 113/203 (55.67%), Postives = 139/203 (68.47%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTA----VPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHLPA 597
            SAHAVEREFRVL AL+ +DVPVP    LCEDASV+GTPFY+M FV GR+F D TLP +    ER   Y +   TLA IH LD+R   L+ +G   GGYF RQ++ L  V +KQ         E+AG F GL +V SD+   S      + D+  LVHGDF+VDN++FHPTEPRVIAVLDWELSTLGHP+AD+ANL ++  +PA
Sbjct:   75 SAHAVEREFRVLEALQNSDVPVPPVYHLCEDASVLGTPFYLMGFVEGRIFRDPTLPCIKTSQERAQYYRAMVATLAAIHTLDWRKRSLSTFGKPDGGYFARQLKRLRSVMEKQA--------ENAGYFPGLQEVCSDMLLYSEQPGFKMRDQTCLVHGDFKVDNVVFHPTEPRVIAVLDWELSTLGHPMADLANLAMMFFVPA 269          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A4P9XUZ4_9FUNG (Kinase-like domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XUZ4_9FUNG)

HSP 1 Score: 206 bits (524), Expect = 5.100e-62
Identity = 109/192 (56.77%), Postives = 135/192 (70.31%), Query Frame = 1
Query:    1 SAHAVEREFRVLRAL-RQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANL 573
            +AHAVEREFRVL AL R TDVPVP    LCED SV+GTPFYVMEFV GR+FSD     + A  ER A + S  ETLAK+H  D+RA+GLADYG     ++ RQ+ +L RV+  Q         +  GP   L ++++   R   AV DR T+VHGDF+VDN++FHPTEPRVIA+LDWELST+GHPL+D+ANL
Sbjct:   86 TAHAVEREFRVLDALGRHTDVPVPRVFHLCEDTSVLGTPFYVMEFVKGRIFSDVRFNTL-APEERRACWLSVVETLAKLHLADYRAIGLADYGRPSD-FYARQIRSLQRVSAAQAAVVDSATGKAVGPIPRLDEMLAWFSR--NAVADRTTIVHGDFKVDNVVFHPTEPRVIAILDWELSTIGHPLSDLANL 273          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A3A5AM53_9DELT (Phosphotransferase family protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A5AM53_9DELT)

HSP 1 Score: 202 bits (513), Expect = 9.300e-62
Identity = 106/199 (53.27%), Postives = 132/199 (66.33%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHLPA 597
            SAHAVERE+R+L++L  TDVPVP+  LLCED SV+GTPFYVME VNGRVF D TL  + AR ER A + S   TL +IH++D+ A+GLADYG   G Y  RQ+   +R  K         L +D      L K + D    +    D  T+ HGDFR++NL+ HP EPRV AVLDWELSTLGHPLAD+A  C+++H PA
Sbjct:   72 SAHAVEREYRILKSLDHTDVPVPKTYLLCEDESVIGTPFYVMERVNGRVFRDITLEQVPAREERAAIFDSMVCTLVRIHQVDWEALGLADYG-KPGNYMARQISRWSRQYKAS-------LTQDIQSMNNLMKWLDD----NIPEDDTTTIAHGDFRLENLVIHPVEPRVTAVLDWELSTLGHPLADLAYNCMVYHFPA 258          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: U4KUM1_PYROM (Similar to Acyl-CoA dehydrogenase family member 10 acc. no. Q6JQN1 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4KUM1_PYROM)

HSP 1 Score: 202 bits (514), Expect = 1.000e-60
Identity = 97/192 (50.52%), Postives = 139/192 (72.40%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVP-DRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANL 573
            +AHAVERE+RVL AL  T VPVP A++LCED S++GTPFY+M+FV GR+FS+ ++PG+SA  +R   + S  ETLA +H++DF+ +GL  YG   G Y  RQ++TL+ ++K Q     +   ++ GP     +   +++  S ++P DR T++HGD+++DNLIFHP+EP VI +LDWELSTLGHPL+DV NL
Sbjct:   66 TAHAVEREYRVLAALTPTSVPVPNAIILCEDVSIIGTPFYIMDFVGGRIFSNPSIPGVSAE-DRNKMWRSALETLAGLHKIDFKEVGLEKYGKPNGFYL-RQIKTLSTISKAQGETKDVETGKEVGPIPNFAE---NMQYFSESLPYDRTTIIHGDYKIDNLIFHPSEPHVIGILDWELSTLGHPLSDVCNL 252          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A496ZA77_9DELT (Phosphotransferase family protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A496ZA77_9DELT)

HSP 1 Score: 200 bits (509), Expect = 3.680e-60
Identity = 105/205 (51.22%), Postives = 138/205 (67.32%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVP------DRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHLPA 597
            SAHAV+RE+R+L+ L  TDVPVP  +LLCED +++GTPFYVME V GR+F D TLPG + R ER A + +  ETLA+IHR+D++AMGL D+G   G Y  RQV    + +K+                A  T  +  + RL   +P      D  T+VHGDFR++N+IFHPTEPRV+AVLDWELSTLGHPLAD+A  C+ ++LP+
Sbjct:   71 SAHAVDREYRILKTLGNTDVPVPGMVLLCEDTAILGTPFYVMEHVEGRIFRDPTLPGATGRKERKAIFDAMNETLARIHRVDWQAMGLRDFGRP-GNYMARQV---GKWSKQYT--------------ASKTDPIGSMDRLMEWLPLNIPDDDSTTIVHGDFRLENMIFHPTEPRVVAVLDWELSTLGHPLADLAYNCMGYYLPS 257          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: A0A0U5H6T1_ASPCI (APH domain-containing protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5H6T1_ASPCI)

HSP 1 Score: 198 bits (503), Expect = 9.670e-60
Identity = 93/191 (48.69%), Postives = 134/191 (70.16%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANL 573
            SAH VERE+R+L+AL  T +PVP    LC D SV+GTPFY+MEF++GR+F D+TLPG+SA+ ER   +     TLA+ HRLD +A+GL  YG + GG++ RQ+ET   +A+ Q +   +   E  G   G+ ++++          DR +L+HGDF++DNL+FH TEPR+I +LDWE+ST+GHP+AD+AN+
Sbjct:   67 SAHKVEREYRILKALEATSIPVPRTYSLCTDGSVLGTPFYIMEFLDGRIFEDATLPGLSAK-ERKVMWREAMTTLARFHRLDPQAVGLEGYGRA-GGFYERQLETWRGLARAQGVVVDVESGEAVGDVPGIERMIAFFSDERYQPADRASLIHGDFKIDNLVFHKTEPRIIGILDWEMSTIGHPIADIANV 255          
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Match: Q2URL6_ASPOR (APH domain-containing protein n=26 Tax=Aspergillus TaxID=5052 RepID=Q2URL6_ASPOR)

HSP 1 Score: 199 bits (506), Expect = 1.470e-59
Identity = 95/197 (48.22%), Postives = 136/197 (69.04%), Query Frame = 1
Query:    1 SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVFSDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFGRQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVPDRITLVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHL 591
            +AH VERE++V+ AL QTDVPVP+A  LC D++V+GTPFY+MEF++GR+F+D  +PG+SA  ER A + +  +TLAK HR+D +++GL  +G    GY+ RQ+ T + V+K Q     +  +E  G      + V      ST   DR TLVHGD+++DN+IFH TEPRVI +LDWE++T+GHPL+D  NL   ++L
Sbjct:   67 TAHKVEREYKVIHALEQTDVPVPKAYCLCVDSNVIGTPFYIMEFLDGRLFTDPAMPGVSAE-ERNALWKAAVQTLAKFHRVDPKSVGLETFG-KPSGYYDRQISTFSTVSKAQAQAVDVETKEPVGELPHFMETVRFFSNKSTQPKDRGTLVHGDYKIDNMIFHKTEPRVIGILDWEMATVGHPLSDFCNLTSPYYL 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31028.8391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKT3_ECTSI3.400e-8065.85APH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L392_9PHAE8.990e-7865.37APH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z1G4_9STRA7.850e-6456.85Phosphotransferase enzyme family-domain-containing... [more]
A0A4D9CXK6_9STRA1.420e-6355.67APH domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A4P9XUZ4_9FUNG5.100e-6256.77Kinase-like domain-containing protein n=1 Tax=Tham... [more]
A0A3A5AM53_9DELT9.300e-6253.27Phosphotransferase family protein (Fragment) n=1 T... [more]
U4KUM1_PYROM1.000e-6050.52Similar to Acyl-CoA dehydrogenase family member 10... [more]
A0A496ZA77_9DELT3.680e-6051.22Phosphotransferase family protein n=2 Tax=Deltapro... [more]
A0A0U5H6T1_ASPCI9.670e-6048.69APH domain-containing protein n=1 Tax=Aspergillus ... [more]
Q2URL6_ASPOR1.470e-5948.22APH domain-containing protein n=26 Tax=Aspergillus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31028contigH-paniculata_contig31028:1413..2466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue3.7e-68
Seed eggNOG ortholog2880.D8LKT3
KEGG koko:K11729
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phosphotransferase enzyme family
EggNOG OGs2QQPX@2759,COG3173@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size597
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.2277799-CDS-H-paniculata_contig31028:1412..17751622929954.2277799-CDS-H-paniculata_contig31028:1412..1775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31028 1413..1775 +
1691481084.930159-CDS-H-paniculata_contig31028:1412..17751691481084.930159-CDS-H-paniculata_contig31028:1412..1775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31028 1413..1775 +
1622929954.243012-CDS-H-paniculata_contig31028:2232..24661622929954.243012-CDS-H-paniculata_contig31028:2232..2466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31028 2233..2466 +
1691481084.9431202-CDS-H-paniculata_contig31028:2232..24661691481084.9431202-CDS-H-paniculata_contig31028:2232..2466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31028 2233..2466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31028.8391.1prot_H-paniculata_contig31028.8391.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31028 1413..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31028.8391.1

>prot_H-paniculata_contig31028.8391.1 ID=prot_H-paniculata_contig31028.8391.1|Name=mRNA_H-paniculata_contig31028.8391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
SAHAVEREFRVLRALRQTDVPVPEALLLCEDASVVGTPFYVMEFVNGRVF
SDSTLPGMSARSERTAAYASTAETLAKIHRLDFRAMGLADYGHSQGGYFG
RQVETLARVAKKQVLRCSILLEEDAGPFAGLTKVVSDLRRLSTAVPDRIT
LVHGDFRVDNLIFHPTEPRVIAVLDWELSTLGHPLADVANLCILHHLPA
back to top

mRNA from alignment at H-paniculata_contig31028:1413..2466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31028.8391.1 ID=mRNA_H-paniculata_contig31028.8391.1|Name=mRNA_H-paniculata_contig31028.8391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1054bp|location=Sequence derived from alignment at H-paniculata_contig31028:1413..2466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGCGCATGCCGTAGAGCGAGAATTTAGAGTGCTTCGCGCCCTCCGCCA GACAGACGTACCCGTGCCAGAGGCGCTGTTGCTTTGCGAAGACGCCTCCG TCGTCGGCACCCCTTTTTACGTGATGGAGTTCGTGAACGGCAGAGTCTTC TCCGACTCGACCCTGCCCGGGATGAGCGCTCGATCCGAGCGTACGGCTGC CTACGCAAGCACCGCGGAGACGTTAGCGAAGATCCATCGCCTGGATTTTC GCGCCATGGGGTTGGCTGATTACGGCCACAGCCAGGGGGGTTATTTCGGA CGGCAGGTCGAGACCCTCGCGAGGGTTGCTAAAAAACAGGTACTGCGCTG CTCAATTTTGCTCGTAACCCTTGTCATCGTGAGTGAATGGGCGAGGGTAT GAAGAATGTTTGCAGGCGGGAACGCTTAGAATTGTATTGGCGTTGGGTTG AGATAGTTAATTACTGTGCAGCGGCGTTTAAGGTTACTGGAGGCGTTGGA CACCGAGTTTCCCCGTCTCTATAGATTCTAGTGGGAGTTGCCCACGAGAA GTTGTGTCACAATGCGCAGTCTTGATCAAATAGTGTATCATTATCCTGTG TGCCAAAGTAACACATTTTTTCCTGATTGAAGATAATTGTACAATCACCA GCACCTGGTTGGTCAAAAATCTTGACAATAAAAAGCAAATACAACATGCC CCCACTTTCTCTTGAGCAATTTACCCCATGCAAAGTCCAACTCGCGGTTG GCATCAGGACCACCTCGAATTACATAACGTAATATTTATTAAAAGCACAC ACACACTAACACAAAAACAGGAGGAGGACGCTGGACCATTCGCAGGGCTA ACCAAAGTCGTGAGCGATCTACGGAGGCTCAGCACGGCCGTGCCCGACCG AATCACCCTGGTCCACGGCGATTTCCGCGTGGACAATCTAATCTTCCACC CCACAGAACCCCGAGTAATCGCCGTATTGGATTGGGAACTGTCGACGCTT GGTCACCCCTTGGCGGACGTTGCTAACCTGTGCATCTTGCACCACCTTCC AGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31028:1413..2466+

>mRNA_H-paniculata_contig31028.8391.1 ID=mRNA_H-paniculata_contig31028.8391.1|Name=mRNA_H-paniculata_contig31028.8391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig31028:1413..2466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGCGCATGCCGTAGAGCGAGAATTTAGAGTGCTTCGCGCCCTCCGCCA
GACAGACGTACCCGTGCCAGAGGCGCTGTTGCTTTGCGAAGACGCCTCCG
TCGTCGGCACCCCTTTTTACGTGATGGAGTTCGTGAACGGCAGAGTCTTC
TCCGACTCGACCCTGCCCGGGATGAGCGCTCGATCCGAGCGTACGGCTGC
CTACGCAAGCACCGCGGAGACGTTAGCGAAGATCCATCGCCTGGATTTTC
GCGCCATGGGGTTGGCTGATTACGGCCACAGCCAGGGGGGTTATTTCGGA
CGGCAGGTCGAGACCCTCGCGAGGGTTGCTAAAAAACAGGTACTGCGCTG
CTCAATTTTGCTCTCCGCGCATGCCGTAGAGCGAGAATTTAGAGTGCTTC
GCGCCCTCCGCCAGACAGACGTACCCGTGCCAGAGGCGCTGTTGCTTTGC
GAAGACGCCTCCGTCGTCGGCACCCCTTTTTACGTGATGGAGTTCGTGAA
CGGCAGAGTCTTCTCCGACTCGACCCTGCCCGGGATGAGCGCTCGATCCG
AGCGTACGGCTGCCTACGCAAGCACCGCGGAGACGTTAGCGAAGATCCAT
CGCCTGGATTTTCGCGCCATGGGGTTGGCTGATTACGGCCACAGCCAGGG
GGGTTATTTCGGACGGCAGGTCGAGACCCTCGCGAGGGTTGCTAAAAAAC
AGGTACTGCGCTGCTCAATTTTGCTCGAGGAGGACGCTGGACCATTCGCA
GGGCTAACCAAAGTCGTGAGCGATCTACGGAGGCTCAGCACGGCCGTGCC
CGACCGAATCACCCTGGTCCACGGCGATTTCCGCGTGGACAATCTAATCT
TCCACCCCACAGAACCCCGAGTAATCGCCGTATTGGATTGGGAACTGTCG
ACGCTTGGTCACCCCTTGGCGGACGTTGCTAACCTGTGCATCTTGCACCA
CCTTCCAGCGGAGGAGGACGCTGGACCATTCGCAGGGCTAACCAAAGTCG
TGAGCGATCTACGGAGGCTCAGCACGGCCGTGCCCGACCGAATCACCCTG
GTCCACGGCGATTTCCGCGTGGACAATCTAATCTTCCACCCCACAGAACC
CCGAGTAATCGCCGTATTGGATTGGGAACTGTCGACGCTTGGTCACCCCT
TGGCGGACGTTGCTAACCTGTGCATCTTGCACCACCTTCCAGCG
back to top