mRNA_H-paniculata_contig3095.8371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI) HSP 1 Score: 757 bits (1955), Expect = 2.180e-262 Identity = 412/662 (62.24%), Postives = 484/662 (73.11%), Query Frame = 2
Query: 2 GPRGRFDIDLYQCSDAFCGQSDCGEFVVNICDKPRIGCTASDGDYVMEVPTSLTPADGYKIRVGLHGTQLFDCTSTFSIIQDIPVSTLEVFAPALVSADDLQVGNGYGDDDSASVVLDTSSS--TGSQSLFRALRSSNSPS-FDAYSETGIEG-NDIIYVRWEYNDGMGGSFARFNIDLYYCGGGCERNENCGQAVARLCEGCPDSSGEERVPLPFPYSSHNYKIRVSTYKSVQRSVSACSPKFEITAREHPEYSTPTPVEPGLYIKRQPD--PRTRGTPDPVADLPSTPIVRPTNYPAWGPAHNPPAKGTCGNLGLPDIRYASTTKRVYVERNGTRGGCVTLSDIWELEKGALHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHD 1969
G +GRFDI LY+C DAFCGQ DCG F+ ICD P GC G Y M VP L +GYKIRVGLH + L+DC+STFSII+ IP+ ++EV+ P +V + + GDDD AS+ ++ S S G + L + +S+ P +D + G ND I W ++DG+G +FARFNIDLYYCGGGC E+CG+ VARLCE CPDS G E V LP YSSHNYKIRVST ++R S+CSPKFEI ++ P YSTP+P LY PR T PV DLPS P+V PT +P WG + P + C ++ +P +RYASTT R+YVE+ RGGC TL++IWE L+P+ P TN+R TGVWLLTEELYV+DGV LQVHGT RGGDCDELRLLSDE TFINLRAHGG SFLGTKV+SW+EGKGTVDT+HEDGRSY+SAVSEV YDP+QTC+G AK + GE+RMDVIDSEI +LG++ESESYGL WKVRGFC+DKSNL+VFD VNVYGD+INS+IH NYFG YSYGHQ GNWSYNKMH+NVEYGFDPHDDSDYL I GNDVW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+AVLESFY+NV NNVF NRYGIRFSVG+GYNW+ D
Sbjct: 42 GSQGRFDIALYECGDAFCGQQDCGTFLQEICDMPGAGCMDGSGTYRMTVPAELPAGNGYKIRVGLHDSSLYDCSSTFSIIRTIPIPSMEVYVPTVVDGGEGNLDGYGGDDDDASLTVEESLSYTAGRRGLASSSSTSSDPQLYDEGTTAGFAAANDTIMASWSFDDGLGRTFARFNIDLYYCGGGCSITEDCGEIVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSRIRRPGSSCSPKFEIRGKDRPLYSTPSPTV--LYDSSDVSLYPRPPVTAPPVEDLPSEPVVLPTIWPDWGEENYAPEQPGCDSIDVPQVRYASTTARIYVEQATNRGGCFTLTEIWESGSRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVEYGFDPHDDSDYLHIVGNDVWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDNGDAGMAVLESFYMNVNNNVFIKNRYGIRFSVGSGYNWMWD 701
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: A0A6H5KSU6_9PHAE (MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU6_9PHAE) HSP 1 Score: 541 bits (1393), Expect = 2.580e-181 Identity = 308/519 (59.34%), Postives = 359/519 (69.17%), Query Frame = 2
Query: 470 RWEYNDGMGGSFARFNIDLYYCGGGCERNENCGQAVARLCEGCPDSSGEERVPLPFPYSSHNYKIRVSTYKSVQRSVSACSPKFEITAREHPEYSTPTPVEPGLYIKRQPD--PRTRGTPDPVADLPSTPIVRPTNYPAWGPAHNPPAKGTCGNLGLPDIRYASTTKRVYVERNGTRGGCVTLSDIWELEKGALHPINPRTNKRAR-------AP-------------TGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNW 1960
RW ++DG+G +FARFNIDLYYCGGGC +CG+ VARLCE CPDS G E V LP YSSHNYKIRVST S++R S+CSPKFEI ++ P YSTP+P LY PR T PV DLPS P+V PT +P WG + P + C ++ +P++RYASTT R+Y+E+ RGGC TL++IWE L+P++P TN+R +P TGVWLLTEELYV+DGV LQVHGT RGGDCDELRLLS+E TFINLRAHGG SFLGTKV+SW+EGK TVDT+HEDGRSY+SAVSEV YDP+QTC+G AK + GE+RMDVIDSEI +LG++ESESYGL WKVRGFCVDKSN +VFD VNVYGD+INS+IHH N NHGIIASKRCDHV XXXXXXXXXXXXXXXXXXXXXXXXXX G+AVLESFY++V NNVF NNRYGIRFSVG+GYNW
Sbjct: 8 RWSFDDGLGRTFARFNIDLYYCGGGCSITGDCGEMVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPT--ALYDSSDVSLYPRPPVTAPPVEDLPSEPVVLPTIWPDWGEENYAPEQPGCDSVDVPEVRYASTTARIYLEQATNRGGCFTLTEIWESGSRPLYPLDPATNERESHSITAVLSPLALLYCRSGVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSNETTFINLRAHGGSFSFLGTKVVSWNEGKRTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCVDKSNPDVFDFVNVYGDMINSNIHH----------------------------------------------NCNHGIIASKRCDHVRIIDNXXXXXXXXXXXXXXXXXXXXXXXXXXHDNGDAGMAVLESFYMDVNNNVFTNNRYGIRFSVGSGYNW 478
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 436 bits (1121), Expect = 2.170e-140 Identity = 245/446 (54.93%), Postives = 309/446 (69.28%), Query Frame = 2
Query: 893 HNPPAKGTCGNLGLPDIRYASTTKRVYVER--NGTRGGCVTLSDIWELEKGA--LHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGASTVSFDGSSDTMYRDN 2212
+ P K C IRY+S +R+Y+E + TRGGCVTL IWE ++G L+ ++ ++ + + TG WLLTEEL+V DG+TL+VHGT+ GGD DELRLLS +TFINLRAHGG L FL TKV +WD D EDGRSYVSAVSEV D SQTC+G AK + GE+RMD+ DSE+GYLG+H SESYGL WKVRGFCVDKSN ++F+ VNVYG+I +SDIHHN FG+Y+YGHQ G+W NKMHDN YGFDPHDDSD+L IH N+V+ NG HGIIASKRC+ V XXXXXXXXXXXXXXXX GLA++ESF +V +N+F+NN+YGIRFSVG+G N +N++ STRY+ ++YLGSD PDV SG NVF N I G ++IKL A+ + ++N A+T+ F+ + T+ N
Sbjct: 28 NEPIPKPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVD-SGRSQDNVFQENNIIGG-VESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGN 471
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 431 bits (1107), Expect = 4.000e-138 Identity = 233/480 (48.54%), Postives = 297/480 (61.88%), Query Frame = 2
Query: 893 HNPPAKGTCGNLGLPDIRYASTTKRVYVER--NGTRGGCVTLSDIWELEKGA--LHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGAST----VSFDGSSDTMYRDNE--EETGMEGVAKGSACFS--DDSSLTPKC 2290
++P +K C + IRYA TTKR+Y+E TRGGC TL IWE G L+ ++P + + TG WLLTEELYV DG+TL+V+GT GGD DELRLLS T+INLRAHGG L F+GTKV SWD + D DGRSY+SAVSE+ D +TC+GNAK GE+RMD+ +SEIGYLGF +SESYGL WKVRGFC DKSN E+FD VNVYG++ +SDIHH FG+Y+YGHQ G+W NKMHDN YGFDPHDDSD+L IH N+V+ NG HGIIASKRC+ V GLA+LESF +V N F+NN+YG+R SVG N +NI+ ++++YN +TYLGSD PDV +SG NVF +N SG +TIK+K+A+ + ++N V FD + +++ + N +E E +CF DS P C
Sbjct: 35 NDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVV-SSGRSQNNVFSQNSFSGAE-ETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 5.960e-136 Identity = 229/465 (49.25%), Postives = 290/465 (62.37%), Query Frame = 2
Query: 941 IRYASTTKRVYVER--NGT-RGGCVTLSDIWELE--KGALHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGAST----VSFDGSSDTMYRDNE--EETGMEGVAKGSACFSD--DSSLTPKC 2290
IRYA TT R+Y+E NGT RGGCVTL IWE KG L+ ++P + + + TG WLLTEELYV DG+TL+V+G+ GGD DELRLLS TFINLRAHGG L F+ TKV SWD + D DGRSY+SA+SE+ D +TC+GNAK GE+RMD+ SEIGYLG+ +SESYGL WKVRGFC DKSN EVFD VNVYG++ +SDIHH FG+Y+YGHQ G+W NKMHDN YGFDPHDDSD+L IH N+V+ NG HGIIASKRC+ V GLA+LESF +V N F+NN+YG+RFSVG N +N + ++ YN ++YLG+D PDV +SG NVF +N SG +TIK+K+A+ + ++N V FD +++ + + N ++ E ACF DS P C
Sbjct: 46 IRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVV-SSGRSQNNVFSQNSFSGAE-ETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 421 bits (1082), Expect = 5.800e-135 Identity = 218/441 (49.43%), Postives = 284/441 (64.40%), Query Frame = 2
Query: 908 KGTCGNLGLPDIRYASTTKRVYVER-NG-TRGGCVTLSDIWE--LEKGALHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGASTVSFDGSSDTMYRDN 2212
K C + +RY + + R+Y+E NG TRGGCVTL IWE ++ L+ ++P++ +R+ TG WLLTEE+YV DG+TLQVHG + GGD DELRLLS +TFI+LRA+GG L FL TKV +WD K D DGRSY+SAVSEV D QTC+G AK + GE+RMD+ +SE+ YLG+H +E+YGL WKVRGFCVDK N E+FD VNVYG+I +SDIHHN FG+Y+YGHQ G+W NKMHDN YGFDPHDDSD+L IH N+VW NG HGIIASKRC+ V GLA+LESF +V +N F+NN+YG+R SVG G N N++ S +N F+YLG+D P+V SG NVF N I G ++I LK+A+ + ++N + A+ + F ++ T+ N
Sbjct: 7 KPDCDSSIAVSVRYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVD-SGRSQDNVFMENNIIGG-VESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGN 445
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 415 bits (1066), Expect = 3.220e-132 Identity = 231/470 (49.15%), Postives = 292/470 (62.13%), Query Frame = 2
Query: 905 AKGTCGNLGLPDIRYASTTKRVYVER--NGTRGGCVTLSDIW-ELEKGA-LHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCD--HVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGASTVSFDGSSDTMYRDNEEETGMEGVAKGSACFS--DDSSLTPKC 2290
AK +C + IRY+ T+KR+Y+E TRGGCVTL DIW +L+ GA L+ + P + + + TG WLLTE LYV DG+TLQVHG + GG DELRLLS FINLRAHGG L F+ TKV +WD K V T GRSY+SAVSEV D Q CDG AK++ GE+RMD+ DSE+ YLG+ SESYGL WKVRG C D SNLEVFD+VNVYG+I +SDIHHNYFG+Y+YGH+ G+W NKMH N EYGFDPHDDSD+L IH N+V+ NGNHGIIASKRC+ XXXXXXX G+A++E+F +V NN F++N+YGIR SVG N N + S++YN++TY GSD P V SG SG + +T+KL A+ + ++N + A T+ F+ T+ N G +CF DS+ P C
Sbjct: 32 AKPSCKSSTKVSIRYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVD-SGRSQDXXXXXXXXSGGQ-ETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLGGASLKVTDGSCFDKKSDSAYKPVC 499
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 380 bits (975), Expect = 4.230e-120 Identity = 193/358 (53.91%), Postives = 236/358 (65.92%), Query Frame = 2
Query: 941 IRYASTTKRVYVER--NGT-RGGCVTLSDIWELE--KGALHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTR 1993
IRYA +T R+Y+E NGT RGGCVTL IWE KG L+ ++P + + + TG WLLTEELYV DG+TL+V+G+ GGD DELRLLS TFINLRAHGG L F+ TKV SWD + D DGRSY+SA+SE+ D +TC+GNAK GE+RMD+ SEIGYLG+ +SESYGL WKVRGFC DKSN EVFD VNVYG++ +SDIHH FG+Y+YGHQ G+W NKMHDN YGFDPHDDSD+L IH N+V+ NG HGIIASKRC+ V GLA+LESF +V N F+NN+YG+RFSVG N +N + ++
Sbjct: 46 IRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAE 403
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI) HSP 1 Score: 385 bits (990), Expect = 1.020e-119 Identity = 226/543 (41.62%), Postives = 305/543 (56.17%), Query Frame = 2
Query: 752 STPTPVEPGLYIKRQPDPRTRG--TPDPVADLPSTPIVRPTNYPAWG---------PAHNPPA-KGTCGNLGLPDIRYASTTKRVYVERN--GTRGGCVTLSDIWELEKGA--------LHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSD-------ENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGASTVSFDGSSDTMYRDN---EEETGMEGVAKGSACFSDDSSL 2278
+ PTPV P +++ P R TP P A + T PA P+ N P K C + IRY++TT R+Y+E G RGGCVT+ IWE G L+ ++P + + + TG WLL E+LYV DG+TL+V G GG DELRL S T+INLRAHGG L F TKV WD + D DGRSY+SAVSE+ DP+QTC+GNAK GE+RMD+++SE+GY+GFH+SESYGL WKVRGFC DKSN EVFD VNVYG+I +S++HH F +Y+YGHQ G+W N +H N YG+DPHDDSD+L IH N V+ N HGIIASKRC++V G+A+LES + N+F+ N+YGIR SVG N++ +N + ++++Y I+TY GSDP +V+ T G N+F N + G IKLK+++ + I NN V F +++ + N E+ T +E V +D++SL
Sbjct: 49 TAPTPV-PAMHVSSAPTSAAREMTTPSPAAMIAFTAAPTMLMMPAGNGTAFNGTDTPSPNTPIPKPECNSTQAVSIRYSATTGRLYLEAGVEGERGGCVTVEQIWEARGGGTTTGAKAPLYAVDPVSGEYSDVITGTWLLEEDLYVEDGITLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAEVQPT-GRSQDNIFDSNTVVGGP-QAIKLKESDGTRITNNVFYEPGLVEFSNTTENVVTGNVGLEDATEVELVEPACFAETDEASL 588
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 377 bits (969), Expect = 7.940e-118 Identity = 224/474 (47.26%), Postives = 292/474 (61.60%), Query Frame = 2
Query: 905 AKGTCGNLGLPDIRYASTTKRVYVER--NGTRGGCVTLSDIWELEKGA--LHPINPRTNKRARAPTGVWLLTEELYVSDGVTLQVHGTARGGDCDELRLLSDENTFINLRAHGGILSFLGTKVISWDEGKGTVDTHHEDGRSYVSAVSEVKYDPSQTCDGNAKEDKGESRMDVIDSEIGYLGFHESESYGLVWKVRGFCVDKSNLEVFDSVNVYGDIINSDIHHNYFGMYSYGHQDGNWSYNKMHDNVEYGFDPHDDSDYLIIHGNDVWGNGNHGIIASKRCDHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAVLESFYLNVKNNVFKNNRYGIRFSVGAGYNWIHDNIVDSSTRYNIFTYLGSDPPDVEGTSGLPIGNVFWRNYISGTRYDTIKLKQAESSVIVNNRIRGASTVSFDGSSDTMYRDNEEETGMEG----VAKGSACFS--DDSSLTPKC 2290
+K +C + IRY++++KR+Y+E TRGGCVTL +IW+ G+ L+ + P + + + TG WLLTE+LYV DG+TLQVHGT+ GG+ +ELRLLS FINLRAHGG L F+ TKV +WD K V T RSY+SAVSE+ D + CDG AK+ GE+RMD+ DSE+ YLG+ SESYGL WKVRGFC D SN EVFD VNVYG+I +SDIHHN+FG+Y+YGH+ G+W NKMH N EYGFDPHDDSD+L IH N V XXXXXXXXX XXXX G+A++ESF +V NN F++N+YG+R SVG N N++ S++YN++TY GSD P V SG N+F N I+G ++IKL A+ + ++N + A T F+ + T+ N TG+ V+KG ACF DS P C
Sbjct: 35 SKPSCKSSTKVSIRYSASSKRLYLESADGKTRGGCVTLEEIWKDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNKVXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVD-SGRSQDNIFSDNTITGGD-ESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGN---TGLGSATLKVSKG-ACFDKKSDSDYKPVC 502 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3095.8371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3095.8371.1 >prot_H-paniculata_contig3095.8371.1 ID=prot_H-paniculata_contig3095.8371.1|Name=mRNA_H-paniculata_contig3095.8371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=718bp MEVPTSLTPADGYKIRVGLHGTQLFDCTSTFSIIQDIPVSTLEVFAPALVback to top mRNA from alignment at H-paniculata_contig3095:1438..17888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3095.8371.1 ID=mRNA_H-paniculata_contig3095.8371.1|Name=mRNA_H-paniculata_contig3095.8371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16451bp|location=Sequence derived from alignment at H-paniculata_contig3095:1438..17888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3095:1438..17888+ >mRNA_H-paniculata_contig3095.8371.1 ID=mRNA_H-paniculata_contig3095.8371.1|Name=mRNA_H-paniculata_contig3095.8371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4308bp|location=Sequence derived from alignment at H-paniculata_contig3095:1438..17888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |