mRNA_H-paniculata_contig30942.8368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.630e-29 Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T RA +R++VDL G RV SL G Y +I+ +DY+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ +A +Q T LWAEA+ ++C+ N + T+S + E W+G PF + + K+ H P+ +KC L N R+LN I R
Sbjct: 710 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 960
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.640e-29 Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T RA +R++VDL G RV SL G Y +I+ +DY+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ +A +Q T LWAEA+ ++C+ N + T+S + E W+G PF + + K+ H P+ +KC L N R+LN I R
Sbjct: 545 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 795
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.650e-29 Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T RA +R++VDL G RV SL G Y +I+ +DY+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ +A +Q T LWAEA+ ++C+ N + T+S + E W+G PF + + K+ H P+ +KC L N R+LN I R
Sbjct: 558 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 808
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.250e-29 Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T RA +R++VDL G RV SL G Y +I+ +DY+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ +A +Q T LWAEA+ ++C+ N + T+S + E W+G PF + + K+ H P+ +KC L N R+LN I R
Sbjct: 701 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNDKRRAITTR 951
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.090e-27 Identity = 82/252 (32.54%), Postives = 120/252 (47.62%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKG-LNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T RA +R +V+L G R SL G Y +I+ +DY+R+ V F+K K DA + Y+ E ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ IA +Q T LWAEA+ ++C+ N + T+S + E W+G PF + + K+ H P +KC L N R+LN I R
Sbjct: 343 GCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRILNEKRRAITTR 593
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 120 bits (301), Expect = 2.860e-27 Identity = 81/252 (32.14%), Postives = 122/252 (48.41%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T RA +R+++DL G RV SL G Y +I+ + Y+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ +A +Q T WAEA+ + C+ N + T+S + E W+G PF + + K+ H P+ +KC L N R+LN + I R
Sbjct: 571 GCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRQAITTR 821
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 119 bits (299), Expect = 5.330e-27 Identity = 76/250 (30.40%), Postives = 131/250 (52.40%), Query Frame = 1
Query: 7 CSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKGLNIGATRTDNGGEFD-GDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIALMQNQTEGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVERQHVSW 753
C K + PK RAT + ++ D+ G M TSL+GS Y ++ ++DY+R V F+KKK D A + GL + R+DNG E+ G+F ++ GI H+L P PQ +GV+E + + E L+ + G + WAEA+N + + N+ T +++GN T E W+G T +EHL+ FG V Y + + + + K + + + ++ S+ +R+ N T++I+ ++V +
Sbjct: 433 CQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEK--GLPKTFWAEAVNTSVYLLNLLPTKALKGN-TPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQ-KSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKF 678
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE) HSP 1 Score: 117 bits (294), Expect = 2.310e-26 Identity = 80/252 (31.75%), Postives = 123/252 (48.81%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
GCSTAK +P T A +R++VDL G +RV SL G Y +I+ +DY+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+++GVAE LG +++ +A +Q T LWA+A+ ++C+ N + T+S + E W+G PF + + K+ H P+ +KC L N R+LN I R
Sbjct: 546 GCSTAKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHIPEHNGVAERALGPIKDAALAARIQAPTLYPGAPNYPSLWAKAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 796
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.130e-24 Identity = 81/259 (31.27%), Postives = 123/259 (47.49%), Query Frame = 1
Query: 4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKG-LNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLRE-KTIALMQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVERQHVSWHP 759
G STAK +P T RA +R++VDL G V S G Y +I+ + Y+R+ V F+K K DA + Y+AE ++ R+DNGGEF +G+F ++ I E P P+Y+GVAE LGL+++ + +A + T LWAEA+ ++C+ N + T+S + E W+G + PF + + K H P +KC L N R+LN + I R +W P
Sbjct: 317 GRSTAKGLSKPIPNETSTRAVKKLQRVFVDLSGKAGVQSFGGKWYTLIVKDGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERVLGLIKDAELVARIHAPTLYSGPPNYPSLWAEAIAWSCNSLNCTSTTSNPEKKSPYEIWHGHPPLPGATYPF-LKPAVYKDKGTHKSEPTAQKCFYLGPGTNTNRDFVRILNEKRQAITTRN-FTWQP 573
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA) HSP 1 Score: 111 bits (278), Expect = 3.330e-24 Identity = 80/252 (31.75%), Postives = 129/252 (51.19%), Query Frame = 1
Query: 7 CSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKGLNIGATRTDNGGEFDGDFHLKL-DEHGISHELAPPDRPQYSGVAEMRLGLLREKTIALMQNQTEGGS--EKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIF--HNHPSRTFRVLNVNTEQIVERQHV 747
C+ K R K+ D ++T + +++DL G M+V S+ G YV ++V+DYSR+ V FI+ K D A+ + + + IT KG ++ R+D+GGEF K +E GI+H+ + P PQ +GV E + L+E A++ GG+ K WAEA+N C I N G T E W G T L + + FG + I+ + + + + IF ++ S FRV N ++ ++E +V
Sbjct: 517 CNQGKQIRVQHKKVPDIQSTSVLDLVHMDLMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG-SLKCIRSDHGGEFQNKVMTKFCNEQGIAHQFSAPRTPQMNGVVERKNRTLQEMAQAMIH----GGNIPVKFWAEAINTACYIINRVYMRKALGK-TPYELWKGKTPNLSYFRVFGCRCF---ILNDKDQLGKFDSRSDEGIFLGYSGNSSAFRVFNFQSKMVMESVNV 759 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30942.8368.1 >prot_H-paniculata_contig30942.8368.1 ID=prot_H-paniculata_contig30942.8368.1|Name=mRNA_H-paniculata_contig30942.8368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp KGCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIback to top mRNA from alignment at H-paniculata_contig30942:1612..2373+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30942.8368.1 ID=mRNA_H-paniculata_contig30942.8368.1|Name=mRNA_H-paniculata_contig30942.8368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig30942:1612..2373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30942:1612..2373+ >mRNA_H-paniculata_contig30942.8368.1 ID=mRNA_H-paniculata_contig30942.8368.1|Name=mRNA_H-paniculata_contig30942.8368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig30942:1612..2373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |