mRNA_H-paniculata_contig309.8364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig309.8364.1
Unique NamemRNA_H-paniculata_contig309.8364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig309.8364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig309contigH-paniculata_contig309:22912..26944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size672
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig309.8364.1prot_H-paniculata_contig309.8364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig309 22913..26944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929949.3093286-CDS-H-paniculata_contig309:22912..234301622929949.3093286-CDS-H-paniculata_contig309:22912..23430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig309 22913..23430 -
1691481082.4738238-CDS-H-paniculata_contig309:22912..234301691481082.4738238-CDS-H-paniculata_contig309:22912..23430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig309 22913..23430 -
1622929949.32868-CDS-H-paniculata_contig309:26337..264261622929949.32868-CDS-H-paniculata_contig309:26337..26426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig309 26338..26426 -
1691481082.4823337-CDS-H-paniculata_contig309:26337..264261691481082.4823337-CDS-H-paniculata_contig309:26337..26426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig309 26338..26426 -
1622929949.4237258-CDS-H-paniculata_contig309:26882..269441622929949.4237258-CDS-H-paniculata_contig309:26882..26944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig309 26883..26944 -
1691481082.4906542-CDS-H-paniculata_contig309:26882..269441691481082.4906542-CDS-H-paniculata_contig309:26882..26944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig309 26883..26944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig309.8364.1

>prot_H-paniculata_contig309.8364.1 ID=prot_H-paniculata_contig309.8364.1|Name=mRNA_H-paniculata_contig309.8364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
LEWPRLASNFSVVLRESGESRANLERYMSSPVSSWASEGVASTASSVAPA
AQLRAPSKETATFSTSDLISSSASTPMFQTPTTPMRAIHVTAGGMASMAV
PQAGASGSNSSSVALPMSPPRTNALAAGGTGGGGIITTPSGEIISASPGA
GTGGMLSPTSSAGMLSPVSAASANNTGRGGDGGSGIEGDSAAGAGSALLM
PPNPHSQQLFQQDKLQVSAGGGA
back to top

mRNA from alignment at H-paniculata_contig309:22912..26944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig309.8364.1 ID=mRNA_H-paniculata_contig309.8364.1|Name=mRNA_H-paniculata_contig309.8364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4033bp|location=Sequence derived from alignment at H-paniculata_contig309:22912..26944- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAGTGGCCTCGTCTCGCTTCAAATTTCTCAGTCGTGCTGCGAGAGAG
TGGAGAATCTCGGTAAGTTGTTGTTTTTGTTCGACATGGCCTAGCGTGGC
CGCATTTGGGAAGTTTGTCTAAGGGTGTTCAGAGGTTTACTGGACACTCG
TGTTGTAGGCAGTGCATGTCTTCTACACCCAGGTACAGCATCAGTAACCC
GGCTACTGTAGCTACAGTGGCTGCCCTTGCTTACGCAGAGAACAACATCC
TTTCCAGCGCGGCAGGCTTACAGGTGACGTATAGATATCCTCGTGATCTT
GCATGCGGTAGGTTGGTTCGTGTATCTGCACCCGACGTTGGCCTCCTCAC
AGTAGAAACAGTACTTGGTGTTCGACCGTTTTGTGGGCTCTGTCTTTTAC
CAGGGAGTCATGAATTGTCTTTGGTGACTGTTAGCACTTTTTTCGATTTT
TGCTTCATTCGTGTTTGTTATGATGCTGGGCTTAATGTATCTCGCTTTTC
CTCCCGCCACAACTGCAGGGCGAACCTCGAGCGGTACATGAGCTCACCCG
TTTCGTCTTGGGCTTCAGAAGGCGTTGCATCTACCGCATCTAGTGTAGCA
CCCGCAGGTGATCAGCCGAGAGTGCATAGAGCTGCGCCGTCTTTGATCTG
GTCGCTGCAAGGAAGGATTTCGAAAAAAGCTCGTAATATTCTTGCAGGCA
GCGCAAAAATCTTGAAATTGTCTGCCACTCTCATCTCGTGCCCGTGCTGC
ACCCATCCTTTGCTTAACATTTAGGCTTGCTTCGAGAAGGATTCGTGAGT
TTTTCTTCCTTGTCTATTCCTTTACCACATTGCGCTTGCTCTCCTTGTCT
ACACGCAGTCGGCATGGGGTGAGATTGCTCCTATTCTCGTACGGTATGAT
GAGATTTTCCCCTGTATCCTCACTTGTCTCAGCCCGTCATCCTGTGCATG
CTTCATCGGGTATGAACAATAGTTGCAGGATTTCGACGTCGGAACGTAAA
CTGTGTCTCGCGCTTTATGGAGTGAACAGTTGGCTACGTTCGACTGCCAC
ACCATTATGAGCGTTGCCATTCCATGCGATTGACGCGCGCGAGTTCACCG
CGAAACGTCGCCGTCTGCTCGATTTCACTTAACAGACGCTCATGAGAATC
TTGCAAGTGGATGCTTTCACTTCGGTCGAAAATCTAAGTTTGAAAATTTT
GATCGAGTTTGGGCGCCGGAACTTGTACGATCTAAGCGCACAAGCGGCTG
GTGCAAAAACACATTTACACACGGCACGGATCACTCAATATTCAGTAGGG
CTTCTCGCGACTGGCAATGAATAGCAATCGGTCCGCTCCGAATAAGGCAT
GGGCGTTCAGCTTTCGTAAATGCTTCATCGGTGTTCATACTTGAGTTGAA
CGAAAAAAGTACGTTATCTGAGAATTTTCTTGGAAATGTCCTTTCGGCGC
AGCGTAGCTCTCCCTGCCCAACCCCACCGCACCGAGTCAGGCGCAGCCCC
GAATCTGCTTTTGTCTCGAAGGAAAGGGAGTGGGGCACTGCCCTTGCCCA
TGTCGACCTGTTGTCGAACTAGGTGTTCCGTCGTCGTGTTGTTGAAGGTA
TTTACTTTATTCTCCAGTAGTCCTGTAGTGTATTTTTTTTAACGGAGTTA
TGAATTGCAGGTCCTGGACAGTTGTACCGCCTGTAACTGCCATGTCGAGC
TTTCACGGATAGAAGAGAATAACCCCAAGTGGGCAATCCGCCCTGCTGTT
CGGTCTTGGCTCAGGTGCTTTGAGGGTTGAGACTAGAGGCACTAACTATA
GTCACGATTTAGTATGTCGTGTCCCTTGGGAATGTTGAGCTCGCGTGACT
GAAACCGTCTCAGACCAAACGTCCTATTTTGTAGACATCAATCACGTATG
AGATGTAATTCCGACCATGTTGCATGCCATGACATGATTAATCCCGGGGG
TATTTCGTAACCTTTGGATACACTTGGTACCCAGATGGAGCCTGACGTCG
AAAAACGTATCTACCACCAGCTAATCTCTGCAGTAACAAGAGCGTACTAG
GTAATCTTGAAAACATAATGACTGATAATTAGTTCATTTTATCTCCAACA
TCGGTCCATTTGATCTGTTTCTTCATATCCCACCTGCCATATTCCTGCAG
TTTTGAACCTTCACCTCGCTCGTTAGCTCGTTTTCAGCATGTCCAAGTTA
TTTAACAAGCCATATGTTTATCGTCGGAATCAACTCAGTGAGCAAAAACA
TAATCCGGGGCAATCGGCAGTCAAGTGATTTGCAAATTATTTACGATGAG
TTGTCATTGTCGACTTGTGGAGTCGACCGTCTACAATATCTAGTCCATTC
AAAGTTTCGATGAGTCAGAGCTCACGGAGTCGCCAGCGACATTTCACCGG
ATAGATGAAGATGAGAAGAGACTTGAGAAGGGAAAGTGAAGTCAGTATTT
TGGTCTACTCCTTTGCATATTTGCGAGAGAATGCTTGCAAACGAGAGTCA
AGAGATCGCGAAATCACAGTAGTGGCACTCGAAGTTTCCGGAACGTTTTC
GGCTGTGAGCTATCTGATTTGGGTTCAGCTTCAGTGGAGCGAGTCATTAG
TCGTCCTGTATTACTTGTCTTGACCCTTTGGTAACCGGACTGCGTAACGA
CCGAAAGGGGGATTTGCTGACCACCAGTCGTTAATAATGAACACGTTGAC
GTGGTACCTTGACCAGCTCTATGTAGCTGGTTCATGCAATGGGTGGCAAC
AGGGAATCCATTTTTGCATTTTTGAGGGTTTTGTCTTGGGTTTAGTCTAG
TGCAAGAACGGGCAAACACCGGGGTTTTTCGTCATGGTGAAATAAATCTA
GAAGCAGTACGTTCCCAAAGGGTCAAATACGTTTACGGACACCCCTGCCT
TGTACTGTTCGTGTTCAACGTAGTACCATCTCGTCCCCTCCTTTCGTCCA
CCTACATAAGTCCTCAAAGAATGATCGATTCCATGGCCTCGTTTCCACGC
GCATCTGCTTTGTTTTATACTGTTGCTATACATTGGCTGTGATCTCAAAA
ATATGTGATGCTTGGTTAATTGGTTTAGCACTTGTGTTGGGTTGTACGGT
AGGAGGCTTTCCTGTGCATACCTGATTACCTTCACGCTAACGTCTGCGTA
CTCGGACGTGGACTAAAGTATCCGGACGACCCATCAGAGCGCGCGGCGCA
CTCCGGGGTGCTTCAAAAGGCGTAGGGGGGCTCCACAACTGTATTGCGGA
ACGCATTATTCCGCGCTAAAATTTCGGGGGATACTGACAACATCTGGTTA
ATCTTGCTAAACCCAGCTCATATTGGCAAATGGAAATTCATTCTCGACAA
GCAGGAGCTTCGTATATTCCGAATACATGAGACCTCGTACGTCTTCGAAT
GTCGAGTGTGGAACCTCGGTCTTGAAACGTGAAAATACGGTTGTCAGATT
AGAAAACCAGGGTAAAGCTAGCACCCTCTTTTGCTGCTGCCGTCGTCGTC
TGTATCCCTTACAGCTCAACTGCGGGCGCCGTCCAAAGAAACTGCCACCT
TTTCTACTTCCGATCTAATATCATCATCAGCTTCGACTCCAATGTTCCAA
ACACCCACCACCCCGATGAGAGCGATACATGTCACTGCGGGGGGCATGGC
GAGCATGGCTGTGCCGCAGGCGGGGGCAAGCGGCAGCAACAGCAGCAGCG
TCGCGCTTCCCATGTCGCCCCCCCGTACAAACGCACTAGCCGCCGGTGGC
ACTGGCGGCGGCGGGATTATCACTACCCCGTCGGGCGAGATTATATCCGC
GTCACCTGGCGCAGGCACCGGAGGTATGCTGTCGCCTACGAGTAGCGCTG
GAATGCTGTCGCCGGTTAGTGCTGCTAGTGCCAACAATACTGGTCGCGGT
GGCGATGGTGGTAGCGGCATAGAGGGTGACAGTGCAGCCGGCGCAGGGTC
GGCGTTGCTCATGCCGCCGAATCCTCACTCACAGCAGCTTTTTCAGCAGG
ATAAGCTCCAGGTGTCGGCGGGGGGGGGGGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig309:22912..26944-

>mRNA_H-paniculata_contig309.8364.1 ID=mRNA_H-paniculata_contig309.8364.1|Name=mRNA_H-paniculata_contig309.8364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig309:22912..26944- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAGTGGCCTCGTCTCGCTTCAAATTTCTCAGTCGTGCTGCGAGAGAG
TGGAGAATCTCGCTAGAGTGGCCTCGTCTCGCTTCAAATTTCTCAGTCGT
GCTGCGAGAGAGTGGAGAATCTCGGGCGAACCTCGAGCGGTACATGAGCT
CACCCGTTTCGTCTTGGGCTTCAGAAGGCGTTGCATCTACCGCATCTAGT
GTAGCACCCGCAGGGCGAACCTCGAGCGGTACATGAGCTCACCCGTTTCG
TCTTGGGCTTCAGAAGGCGTTGCATCTACCGCATCTAGTGTAGCACCCGC
AGCTCAACTGCGGGCGCCGTCCAAAGAAACTGCCACCTTTTCTACTTCCG
ATCTAATATCATCATCAGCTTCGACTCCAATGTTCCAAACACCCACCACC
CCGATGAGAGCGATACATGTCACTGCGGGGGGCATGGCGAGCATGGCTGT
GCCGCAGGCGGGGGCAAGCGGCAGCAACAGCAGCAGCGTCGCGCTTCCCA
TGTCGCCCCCCCGTACAAACGCACTAGCCGCCGGTGGCACTGGCGGCGGC
GGGATTATCACTACCCCGTCGGGCGAGATTATATCCGCGTCACCTGGCGC
AGGCACCGGAGGTATGCTGTCGCCTACGAGTAGCGCTGGAATGCTGTCGC
CGGTTAGTGCTGCTAGTGCCAACAATACTGGTCGCGGTGGCGATGGTGGT
AGCGGCATAGAGGGTGACAGTGCAGCCGGCGCAGGGTCGGCGTTGCTCAT
GCCGCCGAATCCTCACTCACAGCAGCTTTTTCAGCAGGATAAGCTCCAGG
TGTCGGCGGGGGGGGGGGCACTCAACTGCGGGCGCCGTCCAAAGAAACTG
CCACCTTTTCTACTTCCGATCTAATATCATCATCAGCTTCGACTCCAATG
TTCCAAACACCCACCACCCCGATGAGAGCGATACATGTCACTGCGGGGGG
CATGGCGAGCATGGCTGTGCCGCAGGCGGGGGCAAGCGGCAGCAACAGCA
GCAGCGTCGCGCTTCCCATGTCGCCCCCCCGTACAAACGCACTAGCCGCC
GGTGGCACTGGCGGCGGCGGGATTATCACTACCCCGTCGGGCGAGATTAT
ATCCGCGTCACCTGGCGCAGGCACCGGAGGTATGCTGTCGCCTACGAGTA
GCGCTGGAATGCTGTCGCCGGTTAGTGCTGCTAGTGCCAACAATACTGGT
CGCGGTGGCGATGGTGGTAGCGGCATAGAGGGTGACAGTGCAGCCGGCGC
AGGGTCGGCGTTGCTCATGCCGCCGAATCCTCACTCACAGCAGCTTTTTC
AGCAGGATAAGCTCCAGGTGTCGGCGGGGGGGGGGGCA
back to top