mRNA_H-paniculata_contig3087.8354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3087.8354.1
Unique NamemRNA_H-paniculata_contig3087.8354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3087.8354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3087contigH-paniculata_contig3087:10793..12674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size466
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3087.8354.1prot_H-paniculata_contig3087.8354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3087 10793..12672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.449662-CDS-H-paniculata_contig3087:10792..108411622929948.449662-CDS-H-paniculata_contig3087:10792..10841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 10793..10841 +
1691481082.1279216-CDS-H-paniculata_contig3087:10792..108411691481082.1279216-CDS-H-paniculata_contig3087:10792..10841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 10793..10841 +
1622929948.4715223-CDS-H-paniculata_contig3087:11411..114991622929948.4715223-CDS-H-paniculata_contig3087:11411..11499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 11412..11499 +
1691481082.1365376-CDS-H-paniculata_contig3087:11411..114991691481082.1365376-CDS-H-paniculata_contig3087:11411..11499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 11412..11499 +
1622929948.484289-CDS-H-paniculata_contig3087:12347..126721622929948.484289-CDS-H-paniculata_contig3087:12347..12672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 12348..12672 +
1691481082.1450186-CDS-H-paniculata_contig3087:12347..126721691481082.1450186-CDS-H-paniculata_contig3087:12347..12672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3087 12348..12672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3087.8354.1

>prot_H-paniculata_contig3087.8354.1 ID=prot_H-paniculata_contig3087.8354.1|Name=mRNA_H-paniculata_contig3087.8354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
SITGGHATQRAGSGGEGIRDEYRQALANENNTDSVDDADDADDFVRFLER
EKAERKYSMITAAENDTQGATLRVDRQELDANDNTDNIKPPGQQQQEQPS
ARPAPVNSFASTRNLDISRHLGNSGDNSEGDYDQPIKSSRRDRGGNGNSR
VGGG
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mRNA from alignment at H-paniculata_contig3087:10793..12674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3087.8354.1 ID=mRNA_H-paniculata_contig3087.8354.1|Name=mRNA_H-paniculata_contig3087.8354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1882bp|location=Sequence derived from alignment at H-paniculata_contig3087:10793..12674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGATAACGGGTGGTCATGCAACACAAAGGGCGGGCAGCGGAGGAGAAGG
TATGTACGGGCGTCCGTTACTCAGCGACATCTTTGCATTGGCACTTAAAA
TAGGAAACTTGTCTCGTGTTTGTTTGTTTGTATGGTGTTGCTGTTATTGA
GTTTGGTGTACGTATCTCACTTGTTGTTCTGTTTTACTATTTCTGTGTGT
GACTATGTGTGTGTGCTCAATAAATTCATCACTCATCCTTAAGGGTGTCC
CGTTCTTTGTGCCATAACGTAAGCTCACGTACGATTCCGCCTGCCCCCAC
ATGCCCCAATTTAGTCAACTACTCTGGTCCATTTTTTTCGAAGTGTCTGC
TGTATGAAGGTCGAGAGTCCCCATTCAGCATTCCCACTCTTTTCCGTTGC
AGATATCGTTCCTTCTCGACGTTCCTCAATGCCCCCGTCCTTCCGCATGC
CCCCCTTCTCACCGTAATATGGTCGGTTTGTGGACAAATTTATCACACGC
TGTAAATACAGTCTTAATGGCGGAGTTCTATGACGCACCCGTCTAAATGA
TCCTAATATGGTGCTCCCCGTGCCGCCCACCCCTCCGACGGTCTTTTCCG
CTCCATTTTCGTCGCCCAGGTATCAGAGATGAATACCGACAAGCCTTGGC
GAACGAGAACAACACCGACAGCGTCGACGACGCCGACGACGCCGACGACT
TCGTCAGGTGTGTTCTCCAATTTTAACCATGCTTTGATCAAGGACTATGT
AGTCTTCCGCTTTGATGAGGTTTCAACCCACCCAACAGTTGGCATCCCCT
GTCAAACACTCCAACCCGACCCCCCCCCCCTCCCCATCCCACTCGTTGGG
CCGCGGGGTACGCGTGTTCTTCTAGCCGCTTTTGATAAACGCTCCGATTA
ATATCTTGGAAATAGATCTGAATGTGGGACCTTAACATAGTTCGATTGCG
ATGGTAAGCGCTCGCAAACGTATTGGCGATGTTCCTCATATATCCATACT
GCTTTAGTCGTCCTCTCATGCGCAAATGATCTCCACCGCGGTAAACGTAC
CTGTGGTTTTGTCGTGCTGACCAAGCTTCCTTAGTGGGTTGACCCTAGTT
AGTGGGGTCTCGGCTAGGGTAACATGAGTACCCCACCCCTACCCTCCTAA
CTTATTCAGTTTGCGGACGGGTAATGTAGCAGAGTTGAAAGTCCTGGATA
TACTTCTGGTTTGTTTGACATTTGTTTGTCATTTTTTTGAATTTATATTC
TTGGATGTTTTTACTGAAAATCATTTTTCAGCCGTGTTTCCGTTGTGTAG
GGTGTACCCCCCCCCCCCCCCCCTGTCTCCCCTGGACGCGTGCTGCCTTG
CGATAGTAACTCCAGCAATCAGCTGCCATCTCCCTTGTGAAATGCAGCCT
AAGTCGGCGAGCACCCGGCACACCCCCGGAATATCGCTCCGTCCTGAGGT
TGCAGGGATGCGAAGGCAGGGGTTATTGACTATGGCATGCATTTTCACGA
GCAACCCCTCGTGCACACATCCCTGACCCGCACGCCGCCGCGTCGCCCGA
ATCAGGTTCCTGGAAAGAGAAAAAGCGGAACGAAAATATTCCATGATAAC
AGCAGCAGAGAATGATACTCAAGGGGCTACGCTTCGGGTGGACCGGCAAG
AGTTGGATGCTAATGACAATACCGACAATATCAAACCGCCAGGACAGCAG
CAACAAGAGCAGCCAAGCGCGCGCCCCGCCCCGGTCAATTCTTTCGCCAG
CACCAGGAATCTTGATATCAGTCGGCACCTGGGTAATAGTGGCGATAATT
CAGAGGGTGACTATGATCAACCCATTAAATCTTCGCGTAGAGATCGCGGG
GGAAACGGTAATAGTAGAGTAGGCGGAGGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3087:10793..12674+

>mRNA_H-paniculata_contig3087.8354.1 ID=mRNA_H-paniculata_contig3087.8354.1|Name=mRNA_H-paniculata_contig3087.8354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig3087:10793..12674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGATAACGGGTGGTCATGCAACACAAAGGGCGGGCAGCGGAGGAGAAGT
CGATAACGGGTGGTCATGCAACACAAAGGGCGGGCAGCGGAGGAGAAGGT
ATCAGAGATGAATACCGACAAGCCTTGGCGAACGAGAACAACACCGACAG
CGTCGACGACGCCGACGACGCCGACGACTTCGTCAGGTATCAGAGATGAA
TACCGACAAGCCTTGGCGAACGAGAACAACACCGACAGCGTCGACGACGC
CGACGACGCCGACGACTTCGTCAGGTTCCTGGAAAGAGAAAAAGCGGAAC
GAAAATATTCCATGATAACAGCAGCAGAGAATGATACTCAAGGGGCTACG
CTTCGGGTGGACCGGCAAGAGTTGGATGCTAATGACAATACCGACAATAT
CAAACCGCCAGGACAGCAGCAACAAGAGCAGCCAAGCGCGCGCCCCGCCC
CGGTCAATTCTTTCGCCAGCACCAGGAATCTTGATATCAGTCGGCACCTG
GGTAATAGTGGCGATAATTCAGAGGGTGACTATGATCAACCCATTAAATC
TTCGCGTAGAGATCGCGGGGGAAACGGTAATAGTAGAGTAGGCGGAGGCG
TTCCTGGAAAGAGAAAAAGCGGAACGAAAATATTCCATGATAACAGCAGC
AGAGAATGATACTCAAGGGGCTACGCTTCGGGTGGACCGGCAAGAGTTGG
ATGCTAATGACAATACCGACAATATCAAACCGCCAGGACAGCAGCAACAA
GAGCAGCCAAGCGCGCGCCCCGCCCCGGTCAATTCTTTCGCCAGCACCAG
GAATCTTGATATCAGTCGGCACCTGGGTAATAGTGGCGATAATTCAGAGG
GTGACTATGATCAACCCATTAAATCTTCGCGTAGAGATCGCGGGGGAAAC
GGTAATAGTAGAGTAGGCGGAGGC
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