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Homology
BLAST of mRNA_H-paniculata_contig3087.8352.1 vs. uniprot
Match: D7G395_ECTSI (Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G395_ECTSI) HSP 1 Score: 152 bits (384), Expect = 3.990e-39 Identity = 88/175 (50.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 19 RLTGRVDKLWDEGFQSAEVDLWEPCRPVLVYHNGSEMSWVDTTARLDNVEHCRRLRTLGALLALAVTNGCRLPVDLPDLFFRWLLLG----------------TGDRFDLSVEDVVALDPSLGKIFKTLREEITAQDDDEQNITDGVRGDEKLQGLLELEGLPTTTSPEVYMAHM 495
R + RV KLW +GFQS E L E PVLVY GSE W+D A N EH +RLRTLGALLAL+VTN CRLPV+LPDLFFRWLLLG + F+ SVED+VALD SL + F+ L+ D V+ D+ L+GLLE+E LP TS Y+AHM
Sbjct: 2154 RYSARVTKLWVDGFQSEEAHLQEASCPVLVYQEGSESKWLDAKADRSNDEHRKRLRTLGALLALSVTNSCRLPVELPDLFFRWLLLGGESAVVKQKHGQQLSPSCPSFEPSVEDMVALDKSLERPFEALK--------------DAVQSDDALKGLLEIEDLPADTSAADYIAHM 2314
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 154.1 |
| Seed ortholog evalue | 7e-35 |
| Seed eggNOG ortholog | 2880.D7G395 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | cyclin-dependent protein serine/threonine kinase activity |
| EggNOG OGs | KOG0593@1,KOG0593@2759 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 595 |
| Cds size | 594 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3087.8352.1 >prot_H-paniculata_contig3087.8352.1 ID=prot_H-paniculata_contig3087.8352.1|Name=mRNA_H-paniculata_contig3087.8352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
TNPEVVRLTGRVDKLWDEGFQSAEVDLWEPCRPVLVYHNGSEMSWVDTTA
RLDNVEHCRRLRTLGALLALAVTNGCRLPVDLPDLFFRWLLLGTGDRFDL
SVEDVVALDPSLGKIFKTLREEITAQDDDEQNITDGVRGDEKLQGLLELE
GLPTTTSPEVYMAHMVRQTFVEPVEWQISEIRQAFRRALPKNVLYDAQ back to topmRNA from alignment at H-paniculata_contig3087:425..2956+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3087.8352.1 ID=mRNA_H-paniculata_contig3087.8352.1|Name=mRNA_H-paniculata_contig3087.8352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2532bp|location=Sequence derived from alignment at H-paniculata_contig3087:425..2956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAACCCCGAAGTTGTGCGTCTCACGGGGAGGGTGGACAAGCTCTGGGA
CGAAGGGTTCCAGTCCGCAGAGGTGGACCTGTGGGAGCCTTGTCGACCCG
TCCTCGTGTACCACAACGGGAGCGAGGTTAGCTGGAGAATCTCACAATAA
ACTCGCATCCGTCCTCTTGTCACAGAATGTAGTGACTTCATTTTTCTGGC
GGTTTTTTCATTTTCATGACATGTCCGTCGGAAAGTACGCCGCCGAACCG
GAACCGCGACTGAATACCTCATGGGAGCCCAACATCTCTCACAGTCGAAA
ATCGAATCTCTCTTTATGGTTCAACCCCAACCGGATGCGCTACTTACTCA
CGATGAAGTTGAATTAGTAATGATTTTCGGCATAACACAATCAGGAATAC
CTTTTCATCCTAAAAAAGAAGGGTGATTGGAAGGGATATAGCTAGTCACG
GCGACACTCTCCGCAGAAAACACAGCGAGCCTAAACAAAGAAAATCGGCG
CGCGAATCGTGACAGATGAGCTGGGTGGATACGACTGCGAGATTGGACAA
CGTCGAACATTGTCGGCGTCTGCGAACCTTGGGGGCGCTCCTAGCTCTCG
CGGTTACGAACGGATGTCGGCTGCCGGTGGATCTTCCTGATCTGTTCTTC
CGCTGGCTGCTGCTTGGTACCGGAGACCGCTTCGATCTTTCCGTGGAGGT
CAGTGTTCGTGGACCTTTTTGTTAGGTCTAAACCAGTTCCATGTAGATCA
AACGGTACCCAATCAATCGTCCTACCGTAGAGCTGTCATAACGCCCTGTG
TAACCCCCTGAGAAACCAAAGGAGCCCCTAAAACTTGATCACCCCGAGGC
GGAGTATCAAAACAGCAACGAGATATGTTAGCGTGCTGTAATTCATTGGT
TTGGAGTTAGCATCTAGGGGGTTACGATTAGCGTGCACAGTAGTGCAACA
AGACAGTGCTCGCCGGGTGTTCATCACTCCCCGTGGTGATTGAATTACTT
CGAGAACGGCCTGGGGCAATCGCTTTTTTCGCAAGCAAGTGAGAAAAATG
AGCAAGGATACCGACATGGCGAGTACACGATGCGAGTCAATTATACTTAG
GTCATGCATTCATCGAGCCAGCATGTGCTTCTTCGTACTTGCTGTTGTGG
ATGTACAAGTACCGAACCGGCTCGTATTGATCCTTATTGAAGTTGCGATC
GCCCCGGAACCCCCAAATAACTTCACCTATTGAAAAGAGCCTCCGGCGGT
CACAGCCCCCCTTGCCAAGAATATTCCCGGTATAGGGATTACGAGCTATG
TTCGTCGTCAATAGTGATCATTATTCATAGTTTTATCCGCCCGACGGCTC
CAACCAATGTTTCCCAGGAATCGGTCATTGTGTTCCCAAATGACCAGTGG
TCGTTACTTTTGCCCCACAACATTTCGTGGTGTTGATCTCCCGCCAGGAC
GTCGTCGCTCTCGATCCCTCCCTTGGAAAGATTTTCAAGACATTGAGGGA
AGAAATCACGGCCCAGGACGATGATGAGCAGAATATTACCGACGGAGTGC
GCGGAGATGAGAAGCTTCAAGGGTTGTTGGAGCTTGAGGGACTCCCTACG
ACAACTTCACCGGAAGTCTACATGGCACACATGGTACTTGATAAACAAAA
TGGTGTTCACCACCCAATTATCGTCCGATAAATCAGATTGGATGAAGCAA
TATTTTTGGGTAGTTAAGCTTGGACATTATCTAATTGGTACGTCGTGGCT
ACTTTGCTGTTGTGACCTCGTATCTGTTCGCAGACGATGGGTTGATTGTT
CCATATTGGAAGGAAGGCAAAAACGTGGTGTTGCTGATTAGTTGCTGACG
ACGGCAAAGGTGTAATGGCGGCTTTGGAATAGCACCATTCGTAGTTCATC
GATTGTTTTTGAACCCTATATAACCAAATTAGCATACACGGTTCTTGGGA
CATTGAACCATACTGCAGTGTTCCCCGCGAAAAGTCTCGCCCTCGAAATT
TTACACTATTATTGGTAATCACTCTTGACTTGGCTTAACGGCCTAAAGGA
CTTCGAGGTGATACGTTTGTATAAAAAGTTATGTCGAGCTGGCTGTGTGC
TCCAGTGGTAAGCATTGCTCTCCACCAAAGCAAAGTCAAACGATATGTCA
CAGGTCTGTGACGCTGACCACTCAGCTAGCAAAGTGGCTACTGTCATTCA
AGCAAAGTGACTCGTGTTAGGTTTGTTAAAACCCAACTCATACATAGCGA
ATCTCCTCCCCCCCTTCCTTCGGACCATCGGAATTCACTCTGATAGGAAC
AAAGCTCCGTCCTCCAGATGACGCGTGGTCAAAAGTCTAAAAATTACGAT
ATGCAAAACATGAGTACGCCTCACTCCCCCGCTCCCCCCACTCCACGCGT
ACCCGTCGGTTGACTTGCCGTGAACTACCGCAGGTGCGACAGACATTTGT
AGAGCCTGTAGAGTGGCAAATCTCCGAAATTCGGCAAGCGTTCCGACGAG
CTCTTCCCAAGAACGTTCTGTACGATGCCCAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig3087:425..2956+ >mRNA_H-paniculata_contig3087.8352.1 ID=mRNA_H-paniculata_contig3087.8352.1|Name=mRNA_H-paniculata_contig3087.8352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig3087:425..2956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAACCCCGAAGTTGTGCGTCTCACGGGGAGGGTGGACAAGCTCTGGGA
CGAAGGGTTCCAGTCCGCAGAGGTGGACCTGTGGGAGCCTTGTCGACCCG
TCCTCGTGTACCACAACGGGAGCGAGACCAACCCCGAAGTTGTGCGTCTC
ACGGGGAGGGTGGACAAGCTCTGGGACGAAGGGTTCCAGTCCGCAGAGGT
GGACCTGTGGGAGCCTTGTCGACCCGTCCTCGTGTACCACAACGGGAGCG
AGATGAGCTGGGTGGATACGACTGCGAGATTGGACAACGTCGAACATTGT
CGGCGTCTGCGAACCTTGGGGGCGCTCCTAGCTCTCGCGGTTACGAACGG
ATGTCGGCTGCCGGTGGATCTTCCTGATCTGTTCTTCCGCTGGCTGCTGC
TTGGTACCGGAGACCGCTTCGATCTTTCCGTGGAGATGAGCTGGGTGGAT
ACGACTGCGAGATTGGACAACGTCGAACATTGTCGGCGTCTGCGAACCTT
GGGGGCGCTCCTAGCTCTCGCGGTTACGAACGGATGTCGGCTGCCGGTGG
ATCTTCCTGATCTGTTCTTCCGCTGGCTGCTGCTTGGTACCGGAGACCGC
TTCGATCTTTCCGTGGAGGACGTCGTCGCTCTCGATCCCTCCCTTGGAAA
GATTTTCAAGACATTGAGGGAAGAAATCACGGCCCAGGACGATGATGAGC
AGAATATTACCGACGGAGTGCGCGGAGATGAGAAGCTTCAAGGGTTGTTG
GAGCTTGAGGGACTCCCTACGACAACTTCACCGGAAGTCTACATGGCACA
CATGGACGTCGTCGCTCTCGATCCCTCCCTTGGAAAGATTTTCAAGACAT
TGAGGGAAGAAATCACGGCCCAGGACGATGATGAGCAGAATATTACCGAC
GGAGTGCGCGGAGATGAGAAGCTTCAAGGGTTGTTGGAGCTTGAGGGACT
CCCTACGACAACTTCACCGGAAGTCTACATGGCACACATGGTGCGACAGA
CATTTGTAGAGCCTGTAGAGTGGCAAATCTCCGAAATTCGGCAAGCGTTC
CGACGAGCTCTTCCCAAGAACGTTCTGTACGATGCCCAAGTGCGACAGAC
ATTTGTAGAGCCTGTAGAGTGGCAAATCTCCGAAATTCGGCAAGCGTTCC
GACGAGCTCTTCCCAAGAACGTTCTGTACGATGCCCAA back to top
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