mRNA_H-paniculata_contig30801.8346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30801.8346.1
Unique NamemRNA_H-paniculata_contig30801.8346.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30801.8346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30801contigH-paniculata_contig30801:392..1113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30801.8346.1prot_H-paniculata_contig30801.8346.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30801 412..1113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.5894296-UTR-H-paniculata_contig30801:391..4111622929947.5894296-UTR-H-paniculata_contig30801:391..411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30801 392..411 +
1691481081.7669404-UTR-H-paniculata_contig30801:391..4111691481081.7669404-UTR-H-paniculata_contig30801:391..411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30801 392..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.609588-CDS-H-paniculata_contig30801:411..4811622929947.609588-CDS-H-paniculata_contig30801:411..481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30801 412..481 +
1691481081.781219-CDS-H-paniculata_contig30801:411..4811691481081.781219-CDS-H-paniculata_contig30801:411..481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30801 412..481 +
1622929947.6278517-CDS-H-paniculata_contig30801:994..11131622929947.6278517-CDS-H-paniculata_contig30801:994..1113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30801 995..1113 +
1691481081.7935755-CDS-H-paniculata_contig30801:994..11131691481081.7935755-CDS-H-paniculata_contig30801:994..1113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30801 995..1113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30801.8346.1

>prot_H-paniculata_contig30801.8346.1 ID=prot_H-paniculata_contig30801.8346.1|Name=mRNA_H-paniculata_contig30801.8346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MAGKGAGILASELLEVDDMSNDAGQVLQRVVGRVSESQRANLNSCGNASS
SDFQAAVRKFRTQ
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mRNA from alignment at H-paniculata_contig30801:392..1113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30801.8346.1 ID=mRNA_H-paniculata_contig30801.8346.1|Name=mRNA_H-paniculata_contig30801.8346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=722bp|location=Sequence derived from alignment at H-paniculata_contig30801:392..1113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATCTGTAGAGCTTGCCGCATGGCGGGCAAGGGAGCTGGGATTCTTGCA
TCAGAGCTACTTGAGGTGGACGACATGAGCAACGATGCAGGTAACATCCT
CATAGGCAACCTCTGTTCCAGCCAAAATCACAACAATTTCTTGTTAATTG
AGCGGAACTATAACCAGCATAACAGCGTTGACTTGGTTTTCATGTTGCTT
ACTTGTCCGTTATAAAATCAAGTAGGACTAGTTGGATTGTGTCCCGATTG
GAGAATTTTGGAAATGGACGATCTACGCTCTAGCCTACGACAGTACGTGT
TTCGCTGCCGGATGTGGGCAGGGAGCGTTGCATGACATACACACTGCACA
TTCCCCGGCTGTTAGCCCTGTCAGCTGCTCTCTGATGAGCAGCATGAAGG
CGCAAGCTACATATACTGTAGAACATTTTTTTTCGCCGGGGGTGTCGTTT
ATTTACCCGATCGATGAAACTCGCCTCAATGTAACACCAGCGAATGGTTG
CTACGTCAGTTGGAAACCACCCTCTTTCACACTACTTCGGCGTCCATACC
TTTCAGTCAACGCGAACATATGTCACGGATGTCTTCCATTTTCGCGCGTC
CAGGTCAAGTACTTCAGCGAGTGGTGGGCCGTGTCTCCGAGTCTCAGAGA
GCCAACCTCAACAGCTGCGGGAATGCCAGCAGCTCAGATTTTCAAGCGGC
GGTGAGGAAGTTTCGTACCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig30801:392..1113+

>mRNA_H-paniculata_contig30801.8346.1 ID=mRNA_H-paniculata_contig30801.8346.1|Name=mRNA_H-paniculata_contig30801.8346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig30801:392..1113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTACTTGAGGTGGA
CGACATGAGCAACGATGCAGATGGCGGGCAAGGGAGCTGGGATTCTTGCA
TCAGAGCTACTTGAGGTGGACGACATGAGCAACGATGCAGGTCAAGTACT
TCAGCGAGTGGTGGGCCGTGTCTCCGAGTCTCAGAGAGCCAACCTCAACA
GCTGCGGGAATGCCAGCAGCTCAGATTTTCAAGCGGCGGTGAGGAAGTTT
CGTACCCAGGTCAAGTACTTCAGCGAGTGGTGGGCCGTGTCTCCGAGTCT
CAGAGAGCCAACCTCAACAGCTGCGGGAATGCCAGCAGCTCAGATTTTCA
AGCGGCGGTGAGGAAGTTTCGTACCCAG
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