mRNA_H-paniculata_contig3077.8334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3077.8334.1
Unique NamemRNA_H-paniculata_contig3077.8334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.800e-19
Identity = 85/281 (30.25%), Postives = 126/281 (44.84%), Query Frame = -1 
Query:   41 VMQDVETRWSSTHDCIVRAVDLQSAISLQEKGDGIAALLSSVDWCVLK-------------------Q*VTGSLIVLFMQDLRQGMESYVNLQQPKPMATEDEVNVRA-------ILVPCVAALIAVHVNRGGNGTNVVMYREGPRRQPQGFRLEHSCLLLSTHDARVAWGPERQEGDRV-QIVVQRAAAVAVQ*RMTDDRTVKSTPSLRVLSVASTSFAQANGGSAKRF-CDRFVAASKAQAGKGPPGRAAAYLSF--EHFEHLADLEIDK*REMNGISM 793
            V+QDVETRW S+   I R + L  AI L E  D IA +LS  DW VL+                   + VTGS+ V  + +LR G+E+ +       +   D   + A        ++P   AL    +NR G+G++++ YREG RRQPQGF+L+  C       A+  +G  + E   V + V  +A  +A + + + D T  S  +     V +   A    G+ KR     F AA+ A AG          L    E    + DLE+   +   GIS+
Sbjct:  227 VLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAI-----ADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAE-KFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISI 501
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BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.660e-17
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = -1 
Query:  308 VMQDVETRWSSTHDCIVRAVDLQSAISLQEKGDGIAALLSSVDWCVLK-------------------Q*VTGSLIVLFMQDLRQGMESYVNLQQPKPMATEDEVNVRAI--LVPCVAALIAVHVNRGGNGTNVVMYREGPRRQPQGFRLEHSCLLLSTHDARVAWGPERQEGDRVQIVVQRAA 793
            VMQDVETRW ST   +VR + L  AI L E  D +  LLS  DW VL+                   Q VTGS+ +  M +LR+G+E+ +   +        E   +A+  + P   AL+A   NR G+G+N++ YREG RRQPQGF+ +          A+  +G +++E   V   V  AA
Sbjct:  191 VMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAA 373
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BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.070e-12
Identity = 43/126 (34.13%), Postives = 73/126 (57.94%), Query Frame = -1 
Query:  287 VLKQ*VTGSLIVLFMQDLRQGMESYVNLQQPKPMATEDEVNVR-AILVPCVAALIAVHVNRGGNGTNVVMYREGPRRQPQGFRLEHSCLLLSTHDARVAWGPERQE-GDRVQIVVQRAAAVAVQ*R 658
            V++  VTGSL+V F+ DLR  +E  ++     P  ++  VN   A ++PC+ AL   +++R G+G N+++Y+EGPRRQP GF+  H          ++ +G +  E  D  ++V + A  +AV+ R
Sbjct:  193 VIQDVVTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETR 318
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BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.040e-11
Identity = 59/194 (30.41%), Postives = 88/194 (45.36%), Query Frame = -1 
Query:  275 VMQDVETRWSSTHDCIVRAVDLQSAISLQEKGDGIAALLSSVDWCVLK-------------------Q*VTGSLIVLFMQDLRQGMESYVNLQQPKPMATEDEV-NVRAILVPCVAALIAVHVNRGGNGTNVVMYREGPRRQPQGFRLEHSCLLLSTHDARVAWGPERQEGDRV-QIVVQRAAAVAVQ*RMTDD 793
            V+QDVETRW ST+  I R + L+  I+  E  D    LL   DW VL+                   + VT  L+  ++ DL+ G++  V   Q      E  V   +  ++ C  AL      R G+ T+V++Y EGPRRQP+GF+ E          ++  +G E  E   V       A  VA++ + T+D
Sbjct:  156 VVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATED 349
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BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-9
Identity = 57/195 (29.23%), Postives = 85/195 (43.59%), Query Frame = -1 
Query:  275 KVMQDVETRWSSTHDCIVRAVDLQSAISLQEKGDGIAALLSSVDWCVLK-------------------Q*VTGSLIVLFMQDLRQGMESYVNLQQPKPMATEDEV-NVRAILVPCVAALIAVHVNRGGNGTNVVMYREGPRRQPQGFRLEHSCLLLSTHDARVAWGPERQEGDRV-QIVVQRAAAVAVQ*RMTDD 796
            KV+QDVETRW ST   I                D I  LL+  DW VL+                   + VT SL+  ++ DLR  ++  +   Q      E  V   +  ++ C  AL      R  +GT+V++Y EGPRRQP+GF+ +          ++  +G E  E   V + V   A  VA++ + T+D
Sbjct:  143 KVVQDVETRWWSTPREI----------------DSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATED 321
[Close]
BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.110e-5
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = -1 
Query:  296 PMATEDEVNV-RAILVPCVAALIAVHVNRGGNGTNVVMYREGPRRQPQGFRLEHSCLLLSTHDARVAWGPERQEGDRVQIVVQRAAAVAV 562
            P  ++  VN  RA ++PC+ AL    +NR G+G N++ Y+EGPRRQP GF+             ++  G +  E   V  +VQ   AV +
Sbjct:  148 PPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKI 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3077.8334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE7.800e-1930.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI1.660e-1735.52Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE4.070e-1234.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE1.040e-1130.41Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE4.100e-929.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE2.110e-534.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3077contigH-paniculata_contig3077:10989..11901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size913
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3077.8334.1prot_H-paniculata_contig3077.8334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3077 11030..11812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.727086-UTR-H-paniculata_contig3077:10988..110291622929945.727086-UTR-H-paniculata_contig3077:10988..11029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 10989..11029 +
1691481080.9585629-UTR-H-paniculata_contig3077:10988..110291691481080.9585629-UTR-H-paniculata_contig3077:10988..11029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 10989..11029 +
1622929945.7627099-UTR-H-paniculata_contig3077:11812..119011622929945.7627099-UTR-H-paniculata_contig3077:11812..11901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 11813..11901 +
1691481080.9740927-UTR-H-paniculata_contig3077:11812..119011691481080.9740927-UTR-H-paniculata_contig3077:11812..11901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 11813..11901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.7446368-CDS-H-paniculata_contig3077:11029..118121622929945.7446368-CDS-H-paniculata_contig3077:11029..11812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 11030..11812 +
1691481080.9664924-CDS-H-paniculata_contig3077:11029..118121691481080.9664924-CDS-H-paniculata_contig3077:11029..11812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 11030..11812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3077.8334.1

>prot_H-paniculata_contig3077.8334.1 ID=prot_H-paniculata_contig3077.8334.1|Name=mRNA_H-paniculata_contig3077.8334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MLMPFISRYLSISRSARCSKCSNDRYAAARPGGPLPACALEAATNLSQNR
LAEPPFACANEVDATDSTLSDGVDFTVRSSVIRYCTATAAARCTTICTRS
PSCRSGPHATLASWVESSRHECSRRNPWGCRRGPSLYITTLVPLPPRLTW
TAIRAATQGTRIARTFTSSSVAIGLGCCKFTYDSMPWRRSCINSTIKLPV
THCFKTHQSTDDSRAAMPSPFSCRLIADCRSTARTMQSCVDDHRVSTSCI
TFHTVMPLNL*
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mRNA from alignment at H-paniculata_contig3077:10989..11901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3077.8334.1 ID=mRNA_H-paniculata_contig3077.8334.1|Name=mRNA_H-paniculata_contig3077.8334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=913bp|location=Sequence derived from alignment at H-paniculata_contig3077:10989..11901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGCAACGGATAGACCGTCGTACCTTGTGCTCGTCTTCCATGCTGATG
CCGTTCATCTCCCGTTACTTGTCGATCTCCAGGTCCGCCAGGTGCTCGAA
GTGTTCGAACGATAGATACGCCGCGGCGCGTCCCGGTGGACCCTTGCCCG
CCTGCGCCTTGGAAGCCGCCACGAACCTGTCGCAAAACCGCTTGGCAGAG
CCGCCATTTGCTTGCGCGAATGAGGTCGATGCCACCGATAGCACCCTTAG
CGACGGGGTCGATTTCACTGTGCGGTCGTCGGTCATCCGCTATTGCACGG
CGACTGCTGCAGCCCGCTGCACCACGATCTGCACACGGTCTCCTTCTTGT
CGTTCGGGACCCCATGCAACTCTTGCATCGTGGGTCGAGAGCAGTAGGCA
TGAGTGCTCCAGGCGAAATCCCTGGGGCTGTCGCCGCGGTCCCTCCCTGT
ACATCACGACGTTGGTCCCGTTGCCCCCGCGGTTGACGTGGACCGCGATC
AGGGCCGCCACGCAGGGCACGAGAATAGCACGCACGTTCACCTCGTCTTC
TGTCGCCATTGGCTTGGGTTGCTGCAAATTTACGTATGATTCCATGCCCT
GGCGAAGGTCTTGCATAAATAGCACGATCAAGCTTCCCGTCACTCACTGC
TTCAAGACGCACCAGTCCACGGACGACAGCAGAGCGGCGATGCCGTCACC
TTTCTCTTGCAGACTGATTGCTGACTGCAGGTCCACGGCGCGGACAATGC
AGTCGTGCGTGGACGACCACCGCGTCTCCACGTCCTGCATCACCTTCCAC
ACTGTTATGCCCTTAAATTTGTAGCACTTACTCCTCGAGCCGATCGGCCG
CCTGGCTGGATTTCGTGTAGCGGGTAACCAACGCACGAGTCGGAGTCATC
GTCTTCTTTACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3077:10989..11901+

>mRNA_H-paniculata_contig3077.8334.1 ID=mRNA_H-paniculata_contig3077.8334.1|Name=mRNA_H-paniculata_contig3077.8334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig3077:10989..11901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGATGCCGTTCATCTCCCGTTACTTGTCGATCTCCAGGTCCGCCAG
GTGCTCGAAGTGTTCGAACGATAGATACGCCGCGGCGCGTCCCGGTGGAC
CCTTGCCCGCCTGCGCCTTGGAAGCCGCCACGAACCTGTCGCAAAACCGC
TTGGCAGAGCCGCCATTTGCTTGCGCGAATGAGGTCGATGCCACCGATAG
CACCCTTAGCGACGGGGTCGATTTCACTGTGCGGTCGTCGGTCATCCGCT
ATTGCACGGCGACTGCTGCAGCCCGCTGCACCACGATCTGCACACGGTCT
CCTTCTTGTCGTTCGGGACCCCATGCAACTCTTGCATCGTGGGTCGAGAG
CAGTAGGCATGAGTGCTCCAGGCGAAATCCCTGGGGCTGTCGCCGCGGTC
CCTCCCTGTACATCACGACGTTGGTCCCGTTGCCCCCGCGGTTGACGTGG
ACCGCGATCAGGGCCGCCACGCAGGGCACGAGAATAGCACGCACGTTCAC
CTCGTCTTCTGTCGCCATTGGCTTGGGTTGCTGCAAATTTACGTATGATT
CCATGCCCTGGCGAAGGTCTTGCATAAATAGCACGATCAAGCTTCCCGTC
ACTCACTGCTTCAAGACGCACCAGTCCACGGACGACAGCAGAGCGGCGAT
GCCGTCACCTTTCTCTTGCAGACTGATTGCTGACTGCAGGTCCACGGCGC
GGACAATGCAGTCGTGCGTGGACGACCACCGCGTCTCCACGTCCTGCATC
ACCTTCCACACTGTTATGCCCTTAAATTTGTAGATGCTGATGCCGTTCAT
CTCCCGTTACTTGTCGATCTCCAGGTCCGCCAGGTGCTCGAAGTGTTCGA
ACGATAGATACGCCGCGGCGCGTCCCGGTGGACCCTTGCCCGCCTGCGCC
TTGGAAGCCGCCACGAACCTGTCGCAAAACCGCTTGGCAGAGCCGCCATT
TGCTTGCGCGAATGAGGTCGATGCCACCGATAGCACCCTTAGCGACGGGG
TCGATTTCACTGTGCGGTCGTCGGTCATCCGCTATTGCACGGCGACTGCT
GCAGCCCGCTGCACCACGATCTGCACACGGTCTCCTTCTTGTCGTTCGGG
ACCCCATGCAACTCTTGCATCGTGGGTCGAGAGCAGTAGGCATGAGTGCT
CCAGGCGAAATCCCTGGGGCTGTCGCCGCGGTCCCTCCCTGTACATCACG
ACGTTGGTCCCGTTGCCCCCGCGGTTGACGTGGACCGCGATCAGGGCCGC
CACGCAGGGCACGAGAATAGCACGCACGTTCACCTCGTCTTCTGTCGCCA
TTGGCTTGGGTTGCTGCAAATTTACGTATGATTCCATGCCCTGGCGAAGG
TCTTGCATAAATAGCACGATCAAGCTTCCCGTCACTCACTGCTTCAAGAC
GCACCAGTCCACGGACGACAGCAGAGCGGCGATGCCGTCACCTTTCTCTT
GCAGACTGATTGCTGACTGCAGGTCCACGGCGCGGACAATGCAGTCGTGC
GTGGACGACCACCGCGTCTCCACGTCCTGCATCACCTTCCACACTGTTAT
GCCCTTAAATTTGTAG
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