mRNA_H-paniculata_contig30757.8329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig30757.8329.1
Unique Name	mRNA_H-paniculata_contig30757.8329.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 3.330e-52
Identity = 81/110 (73.64%), Postives = 92/110 (83.64%), Query Frame = 1

Query:    1 FRSHRTFLIDRPTYKAVGRGTLVRIDLPTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPSSIEKTLYFEN 330
            F +  TFL+  P YK VGRGTLVR +LP GYQ+K G+Y QVNCPAIS SEWHPFSLFPVPGS PRAGFHVEA+GDWT E+FR  L+NP MPLWITAAQPS +EKT+YF+N
Sbjct:  437 FTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGSRPRAGFHVEAVGDWTNEMFRFCLENPQMPLWITAAQPSVVEKTMYFDN 546

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.700e-51
Identity = 81/110 (73.64%), Postives = 91/110 (82.73%), Query Frame = 1

Query:    1 FRSHRTFLIDRPTYKAVGRGTLVRIDLPTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPSSIEKTLYFEN 330
            F +  TFL+  P YK VGRGTLVR +LP GYQ+K G+Y QVNCPAIS SEWHPFSLFPVPG  PRAGFHVEA+GDWT E+FR  L+NP MPLWITAAQPS +EKT+YFEN
Sbjct:  449 FTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGPRPRAGFHVEAVGDWTNEMFRFCLENPQMPLWITAAQPSVMEKTVYFEN 558

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.070e-49
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 1

Query:    1 FRSHRTFLIDRPTYKAVGRGTLVRIDLPTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPSSIEKTLYFEN 330
            F +   F I+R  ++ VGR TLVR DLP GYQF  GSY QVNCPAISA EWHPFS+FPVPG  PR GF+VEA+GDWTQELFRL L++P MPLWITAAQPS +EK++YFEN
Sbjct:  425 FTTRMHFCIERAVFRPVGRATLVRFDLPPGYQFNVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRLSLEDPCMPLWITAAQPSVLEKSVYFEN 534

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: D8LF83_ECTSI (Putative respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.620e-46
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1

Query:    1 FRSHRTFLIDRPTYKAVGRGTLVRIDLPTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPSSIEKTLYFEN 330
            F + +TFL+  PTY+A+GRGT+V IDLP GY FKAGSY  VNCPAI  +EWHPFSL PVPG   RA F+ EA+GDWT++LFRLGL NP  PLWITAAQPS IE TL+++N
Sbjct:  320 FITKQTFLVSHPTYEAIGRGTMVGIDLPEGYTFKAGSYIYVNCPAIDRAEWHPFSLIPVPGVTSRAAFYAEAVGDWTKDLFRLGLANPSQPLWITAAQPSLIETTLFYDN 429

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: D7G8D0_ECTSI (Putative respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 4.450e-42
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1

Query:   85 TGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPSSIEKTLYFEN 330
            +GY+++ G+Y QVNCPAIS SEWHPFSLFPVPG NPRAG HVEA+GDWT ELFRL L++P MPLWITAAQPS  E+ +YF+N
Sbjct:    4 SGYKYQPGAYVQVNCPAISVSEWHPFSLFPVPGPNPRAGLHVEAVGDWTNELFRLSLEHPRMPLWITAAQPSVAEQAVYFDN 85

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.110e-40
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 1

Query:   88 GYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPSSIEKTLYFEN 330
            GYQFK GSY QVNCPAISA EWHPFS+FPVPG  PR GF+VEA+GDWTQELFRL LD+P MPLWITAAQPS +EK++YFEN
Sbjct:  221 GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRLSLDDPCMPLWITAAQPSVLEKSVYFEN 301

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: A0A7I8JW06_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JW06_SPIIN)

HSP 1 Score: 63.5 bits (153), Expect = 1.940e-9
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1

Query:    4 RSHRTFLIDRPTYKAV---GRGTLVRIDLPTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRL 249
            R+ R+ + D    KA    G+   +R   P G++F++G Y  + CP+ISA EWHPFSL   P        H+  +GDW+ +++ L
Sbjct:  546 RTFRSQVYDMNIIKATTYAGKVLSLRFQKPAGFRFRSGMYIYMQCPSISAFEWHPFSLTSAPDEE-HLSVHIRTLGDWSCQIYSL 629

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: UPI001FB19D3B (respiratory burst oxidase homolog protein E-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB19D3B)

HSP 1 Score: 63.5 bits (153), Expect = 1.960e-9
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1

Query:   82 PTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDN 261
            P G++FK+G Y  + CP IS  EWHPFS+   P  +     H+  +GDWTQE+ R+ +D+
Sbjct:  616 PNGFKFKSGQYVFLQCPKISPFEWHPFSITSAPRDDHLC-VHIRTVGDWTQEMKRVFIDD 674

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: UPI001C4F7089 (respiratory burst oxidase homolog protein C-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F7089)

HSP 1 Score: 63.2 bits (152), Expect = 2.680e-9
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1

Query:   82 PTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQEL 240
            P G+++K+G Y  VNC A+SA EWHPFS+   PG +     H+  +GDWT++L
Sbjct:  641 PQGFKYKSGQYMFVNCAAVSAFEWHPFSITSAPGDD-YLSVHIRTLGDWTRQL 692

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BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Match: UPI001CC51889 (respiratory burst oxidase homolog protein C-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC51889)

HSP 1 Score: 63.2 bits (152), Expect = 2.680e-9
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1

Query:   82 PTGYQFKAGSYAQVNCPAISASEWHPFSLFPVPGSNPRAGFHVEAIGDWTQEL 240
            P G+++K+G Y  VNC A+SA EWHPFS+   PG +     H+  +GDWT++L
Sbjct:  650 PQGFKYKSGQYMFVNCAAVSAFEWHPFSITSAPGDD-YLSVHIRTLGDWTRQL 701

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig30757.8329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8C8_ECTSI	3.330e-52	73.64	Putative respiratory burst oxidase protein n=1 Tax...	[more]
A0A6H5JHI2_9PHAE	1.700e-51	73.64	FAD-binding FR-type domain-containing protein n=1 ...	[more]
A0A6H5JEC1_9PHAE	3.070e-49	70.00	FAD_binding_8 domain-containing protein n=1 Tax=Ec...	[more]
D8LF83_ECTSI	4.620e-46	67.27	Putative respiratory burst oxidase homolog protein...	[more]
D7G8D0_ECTSI	4.450e-42	73.17	Putative respiratory burst oxidase homolog protein...	[more]
D7G8C4_ECTSI	7.110e-40	80.25	Putative respiratory burst oxidase homolog n=1 Tax...	[more]
A0A7I8JW06_SPIIN	1.940e-9	35.29	Hypothetical protein n=2 Tax=Spirodela intermedia ...	[more]
UPI001FB19D3B	1.960e-9	43.33	respiratory burst oxidase homolog protein E-like n...	[more]
UPI001C4F7089	2.680e-9	47.17	respiratory burst oxidase homolog protein C-like n...	[more]
UPI001CC51889	2.680e-9	47.17	respiratory burst oxidase homolog protein C-like n...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig30757	contig	H-paniculata_contig30757:653..1727 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	188.7
Seed ortholog evalue	1.4e-45
Seed eggNOG ortholog	2880.D7G8C8
Hectar predicted targeting category	other localisation
EggNOG free text desc.	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGs	KOG0039@1,KOG0039@2759
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	3
Model size	330
Cds size	330
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig30757.8329.1	prot_H-paniculata_contig30757.8329.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig30757 653..1727 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929945.5211327-CDS-H-paniculata_contig30757:652..738	1622929945.5211327-CDS-H-paniculata_contig30757:652..738	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig30757 653..738 +
1691481080.8937185-CDS-H-paniculata_contig30757:652..738	1691481080.8937185-CDS-H-paniculata_contig30757:652..738	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig30757 653..738 +
1622929945.541459-CDS-H-paniculata_contig30757:1266..1396	1622929945.541459-CDS-H-paniculata_contig30757:1266..1396	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig30757 1267..1396 +
1691481080.9027767-CDS-H-paniculata_contig30757:1266..1396	1691481080.9027767-CDS-H-paniculata_contig30757:1266..1396	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig30757 1267..1396 +
1622929945.557152-CDS-H-paniculata_contig30757:1613..1727	1622929945.557152-CDS-H-paniculata_contig30757:1613..1727	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig30757 1614..1727 +
1691481080.911264-CDS-H-paniculata_contig30757:1613..1727	1691481080.911264-CDS-H-paniculata_contig30757:1613..1727	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig30757 1614..1727 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig30757:653..1727+
coding sequence from alignment at H-paniculata_contig30757:653..1727+

protein sequence of mRNA_H-paniculata_contig30757.8329.1

>prot_H-paniculata_contig30757.8329.1 ID=prot_H-paniculata_contig30757.8329.1|Name=mRNA_H-paniculata_contig30757.8329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
FRSHRTFLIDRPTYKAVGRGTLVRIDLPTGYQFKAGSYAQVNCPAISASE
WHPFSLFPVPGSNPRAGFHVEAIGDWTQELFRLGLDNPHMPLWITAAQPS
SIEKTLYFEN

mRNA from alignment at H-paniculata_contig30757:653..1727+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig30757.8329.1 ID=mRNA_H-paniculata_contig30757.8329.1|Name=mRNA_H-paniculata_contig30757.8329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1075bp|location=Sequence derived from alignment at H-paniculata_contig30757:653..1727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCGGTCCCACAGGACATTCCTGATCGACAGACCTACGTACAAGGCCGT
CGGACGAGGGACTCTCGTCAGGATCGACCTCCCCACGTGGGTGAAGAATA
CCGTAGATTAGCACACACCAGTATAGTCCTATGCACCAGCAGTATACATT
CGTGTGCCGGATTGTGGTGCAAACCCTTTTTTGAAAACGACCAAAATAAT
AGTTTTTCCGGTATTATACCCAGTGATAGTAGAGCTGTAATTCATCCAAG
AATTGAACGAAAGCCTTCAGCCTCCAACCGAGGGGTACTCACCTTCTAAT
TCGATTCAACATGGCATAGGATTGCTCAAGTCGTTTCAGGATAATGCCGA
ATGGGGTCGCGGTCTCAAAAGTTGATGATTTAATCATCCATTGATTATTT
GATACCTTCTCTCTATCGCTCTCTCCCTCCCTCTCTCTCTGTTTTGTCGT
TCTCTACTCATGGCGCCATCTTATTATGCCACATGAATTGACCCGGTCAC
CCTACTTTTTTCCTGCATTTTGTTTTGGCCACTTTGGTCACAGCACTCGA
TCCCCTCACCGCCCACCCTCGTCCCCCCACTCCGCTTTGGCTACCATCCC
AATCCCTCGAGCAGCGGCTATCAATTCAAAGCCGGCTCCTACGCCCAGGT
CAACTGCCCGGCCATCAGTGCCTCGGAGTGGCACCCGTTTTCTCTGTTTC
CCGTTCCGGGGTCCAACCCAAGGGCGGGCTTCCACGTTGAGGCGGTGAGG
CACTACCACTCCAGTCTAGTTGCTAATGATGAATGTCTTGCTTGCCTTCC
TATCACAATGTGTAGAGAGTGTTCATAGGTTAACAAGGTGTTTCGAATGT
CCTCAATACCCCCAGAAATAAGATAAAATCGAGCTATTAGATGTCACATC
TTTTTTGTCGTTTTTTCCTCTCTTTTTTTTTTTTTTTTTTTCGCACCGAC
GAAAATGCCAGATCGGCGATTGGACCCAGGAGCTATTCAGGCTCGGTTTG
GACAACCCTCACATGCCTCTGTGGATTACCGCGGCCCAGCCCAGCTCGAT
TGAAAAGACGCTCTACTTCGAGAAT

Coding sequence (CDS) from alignment at H-paniculata_contig30757:653..1727+

>mRNA_H-paniculata_contig30757.8329.1 ID=mRNA_H-paniculata_contig30757.8329.1|Name=mRNA_H-paniculata_contig30757.8329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig30757:653..1727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCGGTCCCACAGGACATTCCTGATCGACAGACCTACGTACAAGGCCGT
CGGACGAGGGACTCTCGTCAGGATCGACCTCCCCACTTCCGGTCCCACAG
GACATTCCTGATCGACAGACCTACGTACAAGGCCGTCGGACGAGGGACTC
TCGTCAGGATCGACCTCCCCACCGGCTATCAATTCAAAGCCGGCTCCTAC
GCCCAGGTCAACTGCCCGGCCATCAGTGCCTCGGAGTGGCACCCGTTTTC
TCTGTTTCCCGTTCCGGGGTCCAACCCAAGGGCGGGCTTCCACGTTGAGG
CGCGGCTATCAATTCAAAGCCGGCTCCTACGCCCAGGTCAACTGCCCGGC
CATCAGTGCCTCGGAGTGGCACCCGTTTTCTCTGTTTCCCGTTCCGGGGT
CCAACCCAAGGGCGGGCTTCCACGTTGAGGCGATCGGCGATTGGACCCAG
GAGCTATTCAGGCTCGGTTTGGACAACCCTCACATGCCTCTGTGGATTAC
CGCGGCCCAGCCCAGCTCGATTGAAAAGACGCTCTACTTCGAGAATATCG
GCGATTGGACCCAGGAGCTATTCAGGCTCGGTTTGGACAACCCTCACATG
CCTCTGTGGATTACCGCGGCCCAGCCCAGCTCGATTGAAAAGACGCTCTA
CTTCGAGAAT