mRNA_H-paniculata_contig30701.8324.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30701.8324.1
Unique NamemRNA_H-paniculata_contig30701.8324.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30701.8324.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 9.510e-35
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:   43 CEKHIAGGRQEMKRLLEMKAFQATPSNLMVLRNDLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKEQDMSRLRTVVDARDVEIHNLRDRMDSVHRLISGISS 351
            CEKHIAGGRQEMK LLE KAFQATP+NL+ LR DLAEVALQIDAEEDLFVRKGVAIKYLRKALKKK+ D+                L DRM+SVH+L+ G+S+
Sbjct: 1063 CEKHIAGGRQEMKHLLEAKAFQATPANLLALRADLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKDVDLGXXXXXXXXXXXXXXXLADRMESVHKLLKGVSA 1165
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30701.8324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK98_ECTSI9.510e-3568.93Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30701contigH-paniculata_contig30701:772..1792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D8LK98
KEGG koko:K21411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.9906828-CDS-H-paniculata_contig30701:771..10251622929944.9906828-CDS-H-paniculata_contig30701:771..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30701 772..1025 -
1691481080.7356575-CDS-H-paniculata_contig30701:771..10251691481080.7356575-CDS-H-paniculata_contig30701:771..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30701 772..1025 -
1622929945.0052896-CDS-H-paniculata_contig30701:1683..17921622929945.0052896-CDS-H-paniculata_contig30701:1683..1792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30701 1684..1792 -
1691481080.747317-CDS-H-paniculata_contig30701:1683..17921691481080.747317-CDS-H-paniculata_contig30701:1683..1792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30701 1684..1792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30701.8324.1prot_H-paniculata_contig30701.8324.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30701 772..1792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30701.8324.1

>prot_H-paniculata_contig30701.8324.1 ID=prot_H-paniculata_contig30701.8324.1|Name=mRNA_H-paniculata_contig30701.8324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
GGNPLATDAKGLVPCEKHIAGGRQEMKRLLEMKAFQATPSNLMVLRNDLA
EVALQIDAEEDLFVRKGVAIKYLRKALKKKEQDMSRLRTVVDARDVEIHN
LRDRMDSVHRLISGISSFSS*
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mRNA from alignment at H-paniculata_contig30701:772..1792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30701.8324.1 ID=mRNA_H-paniculata_contig30701.8324.1|Name=mRNA_H-paniculata_contig30701.8324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-paniculata_contig30701:772..1792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAACCCGCTTGCCACGGACGCTAAGGGGCTGGTTCCCTGCGAGAA
GCATATTGCCGGAGGTCGGCAGGAGATGAAGCGTCTCTTGGAGATGAAAG
CTTTCCAAGGTGTGTTGTGTAGACGACTGACGAGCGTGAAATTTATTTTC
TGTCCGTTGTGTAGCGACGTACGACAGTGCATGCTCAAATATGTCAGGAG
TCGTCTCCCACCCCCTGGGAGAGAGAACGGCTAGGTCTAAAAAGACCGTC
GAAAATGGTCTTTGGCTAAAGGTGTAGCATACGGTAATTGGGAATCAGGT
TTCCAAGACCCAGCAACCCCAATTATGGAAGGTATATTTTTTTTCAATAA
GCAATTGATGTTATTAATGATATTTATTGCTTGTTTGGTGGGGGTGGTTA
TCGTTTCTCATTGAGGAGTTAGTACAGATGATAGAACTTAAAAGGATCAA
TCTCGTGTATATTCCCGATGAGTGCAGCTAGCCGCGATTGTGGGCTGATT
GAGTCAAAACTTTGACCATGAAATGCGTTCATCCTTTTTAGCAGTATGTA
TGAGCAGGTTGGAAGCTTGGCACTGGCGGCTGTTATCCTCGTTAGCGTAT
TCAGTTTGTGAAGGGGATATATTCCAGCAGCTTGAAAATGCTGAGTGTAA
TCCCATTTTGTTCGCGATCTTTTGTAGTGTGTGTGTGTGTGTGTGTCCCA
AACTTCCTGCACCCATCAAAATCAAAATTCGATTCCAACGTGAATGTACC
CTTTCCATGTCTTGCAGCTACGCCTTCCAACCTGATGGTGTTGAGGAACG
ATCTGGCAGAAGTGGCGCTTCAGATAGATGCCGAAGAAGATCTGTTCGTT
CGCAAGGGCGTGGCGATTAAATACCTCCGCAAGGCGCTCAAGAAAAAAGA
ACAAGATATGTCGAGGCTTAGAACTGTTGTGGACGCTCGCGACGTCGAGA
TTCACAACCTGCGAGATCGAATGGATAGCGTCCACCGCCTCATTAGCGGG
ATTTCGTCTTTCTCGTCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig30701:772..1792-

>mRNA_H-paniculata_contig30701.8324.1 ID=mRNA_H-paniculata_contig30701.8324.1|Name=mRNA_H-paniculata_contig30701.8324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig30701:772..1792- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAACCCGCTTGCCACGGACGCTAAGGGGCTGGTTCCCTGCGAGAA
GCATATTGCCGGAGGTCGGCAGGAGATGAAGCGTCTCTTGGAGATGAAAG
CTTTCCAAGGGAGGGAACCCGCTTGCCACGGACGCTAAGGGGCTGGTTCC
CTGCGAGAAGCATATTGCCGGAGGTCGGCAGGAGATGAAGCGTCTCTTGG
AGATGAAAGCTTTCCAAGCTACGCCTTCCAACCTGATGGTGTTGAGGAAC
GATCTGGCAGAAGTGGCGCTTCAGATAGATGCCGAAGAAGATCTGTTCGT
TCGCAAGGGCGTGGCGATTAAATACCTCCGCAAGGCGCTCAAGAAAAAAG
AACAAGATATGTCGAGGCTTAGAACTGTTGTGGACGCTCGCGACGTCGAG
ATTCACAACCTGCGAGATCGAATGGATAGCGTCCACCGCCTCATTAGCGG
GATTTCGTCTTTCTCGTCATGACTACGCCTTCCAACCTGATGGTGTTGAG
GAACGATCTGGCAGAAGTGGCGCTTCAGATAGATGCCGAAGAAGATCTGT
TCGTTCGCAAGGGCGTGGCGATTAAATACCTCCGCAAGGCGCTCAAGAAA
AAAGAACAAGATATGTCGAGGCTTAGAACTGTTGTGGACGCTCGCGACGT
CGAGATTCACAACCTGCGAGATCGAATGGATAGCGTCCACCGCCTCATTA
GCGGGATTTCGTCTTTCTCGTCATGA
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