mRNA_H-paniculata_contig307.8316.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig307.8316.1
Unique NamemRNA_H-paniculata_contig307.8316.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig307.8316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig307contigH-paniculata_contig307:13006..13601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.8590696-CDS-H-paniculata_contig307:13007..131331622929943.8590696-CDS-H-paniculata_contig307:13007..13133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 13008..13133 -
1691481080.2705758-CDS-H-paniculata_contig307:13007..131331691481080.2705758-CDS-H-paniculata_contig307:13007..13133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 13008..13133 -
1622929943.8707635-CDS-H-paniculata_contig307:13460..136011622929943.8707635-CDS-H-paniculata_contig307:13460..13601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 13461..13601 -
1691481080.2813072-CDS-H-paniculata_contig307:13460..136011691481080.2813072-CDS-H-paniculata_contig307:13460..13601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig307 13461..13601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig307.8316.1prot_H-paniculata_contig307.8316.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig307 13008..13601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig307.8316.1

>prot_H-paniculata_contig307.8316.1 ID=prot_H-paniculata_contig307.8316.1|Name=mRNA_H-paniculata_contig307.8316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
LAVTDGVKVYIKDSQFSDNYGYRGGAVYCNGGTITGSSFVGGDSQSATHN
NGGVRSVGHGLVVNGCSFINTSAVAYDGADPGSALQVFS
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mRNA from alignment at H-paniculata_contig307:13006..13601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig307.8316.1 ID=mRNA_H-paniculata_contig307.8316.1|Name=mRNA_H-paniculata_contig307.8316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=596bp|location=Sequence derived from alignment at H-paniculata_contig307:13006..13601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCCGTGACTGATGGTGTGAAAGTGTATATCAAGGATTCGCAATTCTC
TGACAACTACGGGTACAGAGGCGGGGCCGTATATTGCAATGGCGGCACCA
TCACAGGTTCTTCTTTCGTTGGTGGGGATTCCCAGAGCGCGGTAAGTGTC
CGTCAAGTGGTGTCGTTCACTGTCTTGAGTCTTGCTGCATTCTTTAGAGC
GGCGTTTCCAAGGGTATAGTAAATCTGCCTCCCTGATAATATGTCAACCT
TTCGCTTTTGTGCCCATCCCACCGTCGACAAGCGAACTGCACAACGCCAG
TAATTTTTTGGCGCGGTGTATTGATGTAATGAAAATACCAACAGCTGAAA
CGTTTCGTTTGACGTTTTCAGCTAAACCACATCTGCTACGCTTGTACGAT
TCTCTCTCGCTCGCCATCTAGCTCTTTTCTCATCTTGTTCTTGTGCAAAT
CAAAATGATGTAATATAGACCCACAACAACGGGGGAGTGAGGAGCGTCGG
ACACGGACTGGTCGTAAACGGGTGTTCATTCATCAACACCTCCGCTGTAG
CGTACGACGGAGCCGACCCTGGTTCGGCCCTCCAGGTGTTCAGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig307:13006..13601-

>mRNA_H-paniculata_contig307.8316.1 ID=mRNA_H-paniculata_contig307.8316.1|Name=mRNA_H-paniculata_contig307.8316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig307:13006..13601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCCGTGACTGATGGTGTGAAAGTGTATATCAAGGATTCGCAATTCTC
TGACAACTACGGGTACAGAGGCGGGGCCGTATATTGCAATGGCGGCACCA
TCACAGGTTCTTCTTTCGTTGGTGGGGATTCCCAGAGCGCGCTTGCCGTG
ACTGATGGTGTGAAAGTGTATATCAAGGATTCGCAATTCTCTGACAACTA
CGGGTACAGAGGCGGGGCCGTATATTGCAATGGCGGCACCATCACAGGTT
CTTCTTTCGTTGGTGGGGATTCCCAGAGCGCGACCCACAACAACGGGGGA
GTGAGGAGCGTCGGACACGGACTGGTCGTAAACGGGTGTTCATTCATCAA
CACCTCCGCTGTAGCGTACGACGGAGCCGACCCTGGTTCGGCCCTCCAGG
TGTTCAGCACCCACAACAACGGGGGAGTGAGGAGCGTCGGACACGGACTG
GTCGTAAACGGGTGTTCATTCATCAACACCTCCGCTGTAGCGTACGACGG
AGCCGACCCTGGTTCGGCCCTCCAGGTGTTCAGC
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