mRNA_H-paniculata_contig30698.8313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30698.8313.1
Unique NamemRNA_H-paniculata_contig30698.8313.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50)

HSP 1 Score: 63.9 bits (154), Expect = 4.880e-10
Identity = 31/84 (36.90%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 KWRSDSGATYHMTCFFEYMSNL-RPSSGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
            KW  DSGA+YHM+   E+ +N+ +     +RVG G++L+   YGT+ I + +    V + L +V ++P+L+ NLFS+ +A  +G
Sbjct:  288 KWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVFNGESWVKMSLNNVLFIPELKYNLFSMSSAADKG 371          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A0B1PCE4_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1PCE4_UNCNE)

HSP 1 Score: 54.7 bits (130), Expect = 9.070e-7
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    4 WRSDSGATYHMTCFFEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQ-SEGGNVTVMLRDVAYVPQLRS-NLFS 225
            W  DSG   HMT   E +S L    G V +  GR + +E  G L++ L+ S GG ++V +R+V YVP+L+  NL S
Sbjct:  322 WILDSGCFAHMTSRKELLSPLNHHKGVVTIANGRQIPVEGKGNLSLNLRTSTGGEISVTIRNVLYVPELKGGNLIS 397          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI000CD9675F (uncharacterized protein LOC111894786 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9675F)

HSP 1 Score: 53.1 bits (126), Expect = 3.200e-6
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSL 228
            W  D+GA+ HMT  + Y S L  + +G+VR G G  + I+  G+  I+ + + G   +M +D+ Y+P LRSN+ SL
Sbjct:  352 WYLDNGASNHMTGNYSYFSELNKNITGRVRFGDGSCVSIKGKGS--ILFEGKSGEQKLM-KDIYYIPSLRSNVISL 424          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A4C1U0D8_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1U0D8_EUMVA)

HSP 1 Score: 53.1 bits (126), Expect = 3.280e-6
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 KWRSDSGATYHMTCFFEYMSNLRPSSGK-VRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
            KW  DSGA+ HM C    +S+    S K V VG G ++ +   G + + + +    V   + +V +VP+L++NLFS+  A  RG
Sbjct:   19 KWLVDSGASEHMCCDRSLLSSFSSVSQKSVIVGNGAIISVLGSGKMVVQVYNGSEWVDTTIDNVLFVPELKTNLFSVNRAADRG 102          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI0006A74794 (uncharacterized protein LOC106308606 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74794)

HSP 1 Score: 52.4 bits (124), Expect = 4.390e-6
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
            W  D+GA+ HM+   EY S L    +GKVR G    +DI+  G  +IV  +  G   + L +V Y+P+LRSN+ SL+ A K G
Sbjct:   62 WYLDNGASNHMSGNIEYFSLLDEKVTGKVRFGDDSRIDIK--GKCSIVFINNEGKKKI-LANVYYIPELRSNIISLRQAIKSG 141          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A1Y1IY27_KLENI (CCHC-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IY27_KLENI)

HSP 1 Score: 52.4 bits (124), Expect = 5.790e-6
Identity = 28/86 (32.56%), Postives = 44/86 (51.16%), Query Frame = 1
Query:    1 KWRSDSGATYHMTCF---FEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
            +W  DSGA+ HM      F  +  L P +  ++ G    L++   GT+ +  ++  G     L++VAYVP +  NLFS+K A   G
Sbjct:  248 RWIVDSGASQHMAGIKKLFSTLKMLEPGTRAIKFGNKGFLEVAGVGTVELRCETSTGERLNFLQEVAYVPDVTENLFSVKKATAVG 333          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI000CD859E9 (uncharacterized protein LOC111905051 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD859E9)

HSP 1 Score: 52.4 bits (124), Expect = 5.950e-6
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSL 228
            W  D+GA+ HMT  + Y S L    +G+VR G G  +  E  G+  I+ + + G   VM +D+ Y+P LRSN+ SL
Sbjct:  312 WYLDNGASNHMTGKYSYFSELNKRITGRVRFGDGSCVRTEEKGS--ILFEGKNGEQKVM-KDIYYIPSLRSNVISL 384          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A0L7KS65_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KS65_9NEOP)

HSP 1 Score: 51.2 bits (121), Expect = 1.450e-5
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 KWRSDSGATYHMTCFFEYMSNLRPSSGK-VRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLK 231
            KW  DSGA+ HMT   ++  +++P  G  V V  G  +     G ++I   +   NV   ++DVAYVP+L SNL S+K
Sbjct:  159 KWFIDSGASKHMTPRRDWFKDIKPLEGSTVTVANGEKIVCGGIGDISI---NTACNVVDSIKDVAYVPELTSNLISVK 233          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A177VZF9_BATDL (Integrase catalytic domain-containing protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VZF9_BATDL)

HSP 1 Score: 51.2 bits (121), Expect = 1.590e-5
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 1
Query:   13 DSGATYHMTCFFEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFS 225
            DSGAT HM C  +++++L P + ++   G         GTLTI  +  G   T+ L DV YVP  + NL S
Sbjct:  342 DSGATAHMICHKDWLTDLVPITREIHCSGAEKHVATAKGTLTIESEYNGRKSTIHLADVLYVPTFKVNLLS 412          
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: K4FWF5_ARAHA (Uncharacterized protein n=1 Tax=Arabidopsis halleri TaxID=81970 RepID=K4FWF5_ARAHA)

HSP 1 Score: 50.8 bits (120), Expect = 2.170e-5
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
            W  D+GA+ HMT    + S L     GKV+ G G  +DI   G++    ++E      +++D+ Y+P+L+SN+ SL  A + G
Sbjct:  325 WYLDNGASNHMTGNKTFFSELNEKIKGKVKFGDGSCIDIGGKGSILFQSKTEEQR---LVKDIYYIPELKSNILSLGQATEAG 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI001CDB8C504.880e-1036.90uncharacterized protein LOC122853856 n=1 Tax=Aphid... [more]
A0A0B1PCE4_UNCNE9.070e-740.79Uncharacterized protein n=1 Tax=Uncinula necator T... [more]
UPI000CD9675F3.200e-638.16uncharacterized protein LOC111894786 n=1 Tax=Lactu... [more]
A0A4C1U0D8_EUMVA3.280e-634.52Retrovirus-related Pol polyprotein from transposon... [more]
UPI0006A747944.390e-640.96uncharacterized protein LOC106308606 n=1 Tax=Brass... [more]
A0A1Y1IY27_KLENI5.790e-632.56CCHC-type domain-containing protein n=1 Tax=Klebso... [more]
UPI000CD859E95.950e-639.47uncharacterized protein LOC111905051 n=1 Tax=Lactu... [more]
A0A0L7KS65_9NEOP1.450e-538.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A177VZF9_BATDL1.590e-538.03Integrase catalytic domain-containing protein n=1 ... [more]
K4FWF5_ARAHA2.170e-533.73Uncharacterized protein n=1 Tax=Arabidopsis haller... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30698contigH-paniculata_contig30698:257..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2e-07
Seed eggNOG ortholog164328.Phyra85884
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGs3Q9XS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929943.4445915-CDS-H-paniculata_contig30698:256..5051622929943.4445915-CDS-H-paniculata_contig30698:256..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30698 257..505 -
1691481080.0828521-CDS-H-paniculata_contig30698:256..5051691481080.0828521-CDS-H-paniculata_contig30698:256..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30698 257..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30698.8313.1prot_H-paniculata_contig30698.8313.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30698 257..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30698.8313.1

>prot_H-paniculata_contig30698.8313.1 ID=prot_H-paniculata_contig30698.8313.1|Name=mRNA_H-paniculata_contig30698.8313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
KWRSDSGATYHMTCFFEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQ
SEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG
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mRNA from alignment at H-paniculata_contig30698:257..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30698.8313.1 ID=mRNA_H-paniculata_contig30698.8313.1|Name=mRNA_H-paniculata_contig30698.8313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig30698:257..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGGCGTAGTGACAGTGGTGCTACTTACCACATGACGTGTTTCTTCGA GTACATGTCTAACCTCCGCCCCAGCAGTGGTAAGGTTAGAGTTGGAGGTG GTAGACTGCTTGACATAGAAAACTATGGTACACTGACTATAGTGCTGCAA AGTGAGGGAGGAAATGTCACAGTGATGCTTCGAGATGTTGCGTATGTTCC CCAACTACGTTCTAACTTGTTCTCGCTAAAGGCAGCCCAGAAGCGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig30698:257..505-

>mRNA_H-paniculata_contig30698.8313.1 ID=mRNA_H-paniculata_contig30698.8313.1|Name=mRNA_H-paniculata_contig30698.8313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig30698:257..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGGCGTAGTGACAGTGGTGCTACTTACCACATGACGTGTTTCTTCGA
GTACATGTCTAACCTCCGCCCCAGCAGTGGTAAGGTTAGAGTTGGAGGTG
GTAGACTGCTTGACATAGAAAACTATGGTACACTGACTATAGTGCTGCAA
AGTGAGGGAGGAAATGTCACAGTGATGCTTCGAGATGTTGCGTATGTTCC
CCAACTACGTTCTAACTTGTTCTCGCTAAAGGCAGCCCAGAAGCGGGGCA
AATGGCGTAGTGACAGTGGTGCTACTTACCACATGACGTGTTTCTTCGAG
TACATGTCTAACCTCCGCCCCAGCAGTGGTAAGGTTAGAGTTGGAGGTGG
TAGACTGCTTGACATAGAAAACTATGGTACACTGACTATAGTGCTGCAAA
GTGAGGGAGGAAATGTCACAGTGATGCTTCGAGATGTTGCGTATGTTCCC
CAACTACGTTCTAACTTGTTCTCGCTAAAGGCAGCCCAGAAGCGGGGC
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